CsGy6G018090 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G018090
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein l21 mitochondrial
Location	Chr6 : 18889843 .. 18894321 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAGTTTTCGTATGAACTATTTATGAAAATTTTATCTAAATATACATTAAACTCTTAACTTTCTCTTACCAATAGAGACTAAGATGGTATGATTTGACTATATAATACGAATCACATTTAAACACAATTATTGGGGTAAATTAGAGAGGGCAGCTCGAAAAGACAAGTTTCCGTTTTATATTTTCAAAACTATTGTTGCTTTTACTCTTTGATTTTTCTAAACCCTACTTCATTTCACGCCGGCCACCCCCTCCACCCCCTCTCTCCCTCCATCTCACTGTCACCCACTGCACGCCCGACGTGATCTCACCGTCTACCGTCGCACGCTTCACTCTCAGCTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGGTTATCTCTGTTTTTCTTTTCTAGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGGTTTTGATTTTTCTTCTATCTTTTCATTTTGTTTCGTTCATTATGTTGTTTAATATGTCCACCCACAAAGAAGTAGAGCAAAAGATGTATGGTTTTTATTTTACTCTTTTGTTGATTTCTTATTCAGTCAATGTGTAACCAATCCAAATGAAAACATAAAAACGACAATGTATGCTTCGCATATTAGGAAAACAGTACGAACTTACTTGAACAGAACTCTAGAATTCTAGAGGTTGCACAACTGTCTTTTGAGTTCTAAAGATTAAGAAAATAGTAAATTGAATCAATAAATAATGAATGACAAATGAAAAGAGCGTATTATTCTTATCCGAATAACTAAATAAAATGGAACAGAAAAGTTCAATAAACTTATAAAGCACAAAAGAAAACTGGCCTTCATAATCAGGTACAATAAACTTGTTCAATAAGCTGTCTTGAAAATATTTTTTCTCTTACAAAAGAACAGCAAAATACCATGGAAAAACAGATAGACACACACAAAAAGGATCCACCAGAACAACGAATGGGTAAACCTGGAGTTTGCTTGAGTGTTGAAATAATTATTGATGCATATGAACTGGTGTAGGTTGGGGCAAATAGAAATTGGGGCAAATAGAAATAAAGGATCTCCTTTATGGTAAATAGAAGCATTAGTTTTTTCAAAATGTGAAATCCTCCAAATTTGGACCTATTTGGAATATAATTTTTTTTTTTTAATTTTTAAAAACAGGATTTCAAATCTCAACAAATTCAAAATTCTTCTCTTCCGTTTCTTTTCCATCCAAACATGTCGATCAAATTCAGGGGTTCCCAACATGTGTTTATGTTTTTATTTTCTTTCTGCTGATTAAGAAGTTTGGAATATTGTGGCAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGGTTAAAACCTGTGGCATGTCTTAACGAGTTTTATGAATTAGTAGTTGGACAGTTATCCACTCTTTTCTTTTGGTTACTCTTGTAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGGTTTGCAACTCCTGTTCCATTCTTCTTTGTCAATGCGTTACATATAGTATAGTTTATCCGTTTTTATTAGACTTGCTAGCTTTTGGCCATTTTTCTACACGGTCTCCTGCTTCCACTCTTTTGATATGAGCCATCCAACCAGATTAGTAATGCTATATCTATTAATTTTTTCATAGGTACTTGTAGAGAAAAAGGATTTAGTTACAGTTTTTCTCATAAGTTATTCCGAACACAATATTTCACATGGGAGCAATTTCGGAACCTAGAACTGAATTGTACTCATTTTTTTTCTCTACATTCTGCTGTTGTTTCCAGGTTGCAATTTGGAAAGTTAAAATTTGTGCTATGCTATGTTTTTTTTATTGGTAGGATTCGACTTAAACATTAATTTGACAGACTGTAAGGCAATCTGTAGATGAATAAGTATTGAGGAGCTCCTTTGTTTTCTTGACAGTGTGACAAAACATAGTGGAGCTCCTAAAAAGCAATTGTTTTTTGTACTTGAGAAGTTGCACTTTTCAAATTGTCACAGATGAGGCTAAAATATGTGGTGATGTAAATTCGTCAGACTAACTAAAATACGTGTAAAATATATTATCGTTTGGTAGCTTTTATTCAAGTGCTTATTGTTAGTTGCACATGAGATCATAAGGGGATCTTTTCTGACATTTATATTACCCTTTTGCCTTGTCAGTCTTGAATGCCGTCTGTTGATTTTCTCATGTTTGCTTTTATATCTTGCCTACTTGATTTTGATGATTTGTGTTGAACTTCTGTACTGATATCGACTAAAATTCTTCTATGTATTTCATCCCGAGCAAGCTTGAATGATTATTCTTTTATGGATTTATCTTTTGCAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGTAAGAGTGACAGCTAAACTATTTACTCGTTTTTTGTTGCTAATGCAATATATTGTAAGAATAAATTTTTGCTGGCGTGTATTCTCTTGGACTGTTACTATACATTTTCAATTTTCTACCTCTTTGTGCGATTTAGAATCATTTTAGTAACCATAACGATCTAATTGCCAACTTGAGCACCACCTAATTAGGTAAGGTATAGCTCTCAGCCAAAATATCAGAGGTTTAAATTCCTATCCGCACATGTTGAACTTAGAATAGGAATGCCAGTTTGTTAGCAAAATTTATCTACTTTCACATATCCAGGCATTAAGTTGGATGAAAATACTAGAATCTGGAAACTTAACACTGTTTGGAAGATGCCTAGAAGACATGTTCTTCTAATAATTGTTTCTTAAAAGGATTATGGAATTACGTGTTCTACTTAACGCTAATTCTGCAGTATTAAGTGTAATATATTTGTTTCTTAGTGATTTATTTGCTACAATATCATCATAACAACTTTGTTGTCCTGTCTGTGGTTGGTTTACTAATGTAAATCTTTCTTTGGTTGTGCTTTTTTATTTTTTTTCCTCTTAATTTCTTTTTGTTTCCAAATCCTGGAAGTCGTTCTCAAATTCGTGTTCAAATTCTAACTTGAATGATTTTTCCTCCTCTTCAAAAGGCATTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCAGAACCAAAGGACATCGCCAGGTATATCTAGACTATCCAAAAAGATCAGAAGAGTTGCTTATTCAAGTTGTCTGATGACCTCTTTCTACTATGTTTTCTATCTCAGGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAAGTAGAAGGTTCCATGATTCTTACTAGCTAGAAGTGCTAAGTTGGATCTCCTAATTCCTTAGAAGCGAGTCCTTTACTCCCAACTAGGCTAAGGCCACTTTGCTAGGATTCCCATGTCTCTTCTTTATTTTCCTGGCAGTTTTCCCCAAAAATGCGATGCTTCTATTTGAATAAATGGAATTTTCTCATAAGAATTATGATCATACATTTGAGAAGAGTTTGGAATTGTACGGACTAGGATTTGTGCCATATATCATATATGTATGGTAGATATTGAGTTTCTTGATTTGTTGGGTGGTTACAGGATCATACATTATATATTTTCTTTTATTTTTTATATCTGCACATGGATCTCAAAATTTAATCAGTTTGTAGCTTTTCTGTTTTATTATTTATTATTTTTTAAAGGATTGGCTTTTAGCCTTAAGCTGCTCTCCAAGTAAATCTCTTATTTAGAAGATGAATTTAGGGTTTAGGGGCTTGAAATTTTAATTGCATTTCTTTTTTCATTTTTAATTTAATAAATTAAAATTTTGAAAAGATATTATTATTGCT

mRNA sequence

AAAATAGTTTTCGTATGAACTATTTATGAAAATTTTATCTAAATATACATTAAACTCTTAACTTTCTCTTACCAATAGAGACTAAGATGGTATGATTTGACTATATAATACGAATCACATTTAAACACAATTATTGGGGTAAATTAGAGAGGGCAGCTCGAAAAGACAAGTTTCCGTTTTATATTTTCAAAACTATTGTTGCTTTTACTCTTTGATTTTTCTAAACCCTACTTCATTTCACGCCGGCCACCCCCTCCACCCCCTCTCTCCCTCCATCTCACTGTCACCCACTGCACGCCCGACGTGATCTCACCGTCTACCGTCGCACGCTTCACTCTCAGCTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGGTTATCTCTGTTTTTCTTTTCTAGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAAGTAGAAGGTTCCATGATTCTTACTAGCTAGAAGTGCTAAGTTGGATCTCCTAATTCCTTAGAAGCGAGTCCTTTACTCCCAACTAGGCTAAGGCCACTTTGCTAGGATTCCCATGTCTCTTCTTTATTTTCCTGGCAGTTTTCCCCAAAAATGCGATGCTTCTATTTGAATAAATGGAATTTTCTCATAAGAATTATGATCATACATTTGAGAAGAGTTTGGAATTGTACGGACTAGGATTTGTGCCATATATCATATATGTATGGTAGATATTGAGTTTCTTGATTTGTTGGGTGGTTACAGGATCATACATTATATATTTTCTTTTATTTTTTATATCTGCACATGGATCTCAAAATTTAATCAGTTTGTAGCTTTTCTGTTTTATTATTTATTATTTTTTAAAGGATTGGCTTTTAGCCTTAAGCTGCTCTCCAAGTAAATCTCTTATTTAGAAGATGAATTTAGGGTTTAGGGGCTTGAAATTTTAATTGCATTTCTTTTTTCATTTTTAATTTAATAAATTAAAATTTTGAAAAGATATTATTATTGCT

Coding sequence (CDS)

ATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAA

Protein sequence

MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA

Homology

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BLAST of CsGy6G018090 vs. NCBI nr
Match: XP_004144239.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >XP_011657340.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >KGN47534.1 hypothetical protein Csa_6G357000 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 2.2e-111
Identity = 244/270 (90.37%), Postives = 244/270 (90.37%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
           PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQGVEKPENIGKPSKVA KKQEQVAVAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of CsGy6G018090 vs. NCBI nr
Match: XP_008464840.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >ADN33989.1 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo])

HSP 1 Score: 387.5 bits (994), Expect = 3.4e-104
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTDPSLCTYW
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTRYLSSDSRNG+EXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSA VQAVVEEH                         ELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CsGy6G018090 vs. NCBI nr
Match: XP_023545372.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545373.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545374.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545375.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.7 bits (857), Expect = 2.6e-88
Identity = 205/270 (75.93%), Postives = 219/270 (81.11%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIH LK APSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           +DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CsGy6G018090 vs. NCBI nr
Match: XP_022999749.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999750.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999751.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999752.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 202/270 (74.81%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIH LK +PSFLSQNFRTH S+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKISPSFLSQNFRTHVSVPNCLFAKLDPSLCTNW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX    SR M+KEYTKEE EAEAA+
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSRGMQKEYTKEEKEAEAAS 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S GVFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           +DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CsGy6G018090 vs. NCBI nr
Match: XP_022946851.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946852.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946853.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946854.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 203/270 (75.19%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHA AIFSTKPYIH LK  PSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHALAIFSTKPYIHSLKIVPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXXIS  SR M+KEYTKEE EAEAA+
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXISVPSRGMQKEYTKEEKEAEAAS 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           +DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CsGy6G018090 vs. TAIR10
Match: AT4G30930.1 (Ribosomal protein L21)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-42
Identity = 95/164 (57.93%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 109 YTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 168
           Y+  E   EA  IGYKV+GPL  SE +FKPYEP FA+VQIGSHQFKVSNGDSIFTE+LKF
Sbjct: 107 YSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKF 166

Query: 169 CDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------- 228
           CD+NDKL L KVLL+GS+SQTI+GRP +P A V AVVEEH                    
Sbjct: 167 CDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRT 226

Query: 229 -----ELTKLRIVDIQGVEKPEN--IGKPSKVAGKKQEQVAVAA 246
                ELTKLRI DIQG+EKPE   + KPSK A  +Q +  + A
Sbjct: 227 RGHRQELTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of CsGy6G018090 vs. TAIR10
Match: AT1G35680.1 (Ribosomal protein L21)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 113 EMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 172
           E E E   I   V+  + +        E  FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 173 DKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHELTKLRIV 217
           D+++LNKVLLVG+ + T +G+P V +A V AVVE   L    +V
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVV 174

[Close]

BLAST of CsGy6G018090 vs. Swiss-Prot
Match: sp|Q8L9A0|RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-41
Identity = 95/164 (57.93%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 109 YTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 168
           Y+  E   EA  IGYKV+GPL  SE +FKPYEP FA+VQIGSHQFKVSNGDSIFTE+LKF
Sbjct: 107 YSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKF 166

Query: 169 CDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------- 228
           CD+NDKL L KVLL+GS+SQTI+GRP +P A V AVVEEH                    
Sbjct: 167 CDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRT 226

Query: 229 -----ELTKLRIVDIQGVEKPEN--IGKPSKVAGKKQEQVAVAA 246
                ELTKLRI DIQG+EKPE   + KPSK A  +Q +  + A
Sbjct: 227 RGHRQELTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of CsGy6G018090 vs. Swiss-Prot
Match: sp|P24613|RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-12
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 143 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQ 202
           FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLLVG+ + T +G P V +A V 
Sbjct: 124 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 183

Query: 203 AVVEEHELTKLRIV 217
           AVVEE  L    IV
Sbjct: 184 AVVEEQLLDDKVIV 197

[Close]

BLAST of CsGy6G018090 vs. Swiss-Prot
Match: sp|P51412|RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-11
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 113 EMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 172
           E E E   I   V+  + +        E  FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 173 DKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHELTKLRIV 217
           D+++LNKVLLVG+ + T +G+P V +A V AVVE   L    +V
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVV 174

[Close]

BLAST of CsGy6G018090 vs. Swiss-Prot
Match: sp|Q54IF0|RM21_DICDI (Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=mrpl21 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 132 SEGVFKPY-EPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTI 191
           S+  F P  + +FAVV I   Q+KV  GD I T++++  DV + ++L+KVLLVG+ ++TI
Sbjct: 50  SKNQFTPIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETI 109

Query: 192 VGRPTVPSAVVQAVVEEHELTK 213
           +G+P + +  V A +EE   T+
Sbjct: 110 IGKPIISNFKVHAYIEEQAKTE 130

[Close]

BLAST of CsGy6G018090 vs. Swiss-Prot
Match: sp|B8E0B4|RL21_DICTD (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) OX=515635 GN=rplU PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 143 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSA-VV 202
           F VV+ G  Q+KVS G  +  E+LK  +V D+++L+KVLLVG   + I+G+P V  A V+
Sbjct: 2   FVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVI 61

Query: 203 QAVVEEHELTKL 214
             VV + +  K+
Sbjct: 62  AKVVRQDKYPKV 72

[Close]

BLAST of CsGy6G018090 vs. TrEMBL
Match: tr|A0A0A0KFG2|A0A0A0KFG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.4e-111
Identity = 244/270 (90.37%), Postives = 244/270 (90.37%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
           PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQGVEKPENIGKPSKVA KKQEQVAVAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of CsGy6G018090 vs. TrEMBL
Match: tr|A0A1S3CMX4|A0A1S3CMX4_CUCME (50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-104
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTDPSLCTYW
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTRYLSSDSRNG+EXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSA VQAVVEEH                         ELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CsGy6G018090 vs. TrEMBL
Match: tr|E5GBZ0|E5GBZ0_CUCME (50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-104
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTDPSLCTYW
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTRYLSSDSRNG+EXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSA VQAVVEEH                         ELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CsGy6G018090 vs. TrEMBL
Match: tr|A0A2P6Q464|A0A2P6Q464_ROSCH (Putative ribosomal protein L21 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0008411 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 165/273 (60.44%), Postives = 186/273 (68.13%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQ+LTR  SA+FS  P  H L T P  LS    TH  L +       P L    
Sbjct: 1   MANRRCLQLLTRRVSALFSANPPFHTLSTPPPPLS----THQPLISNSPLVFTPHLSA-- 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTR+ SSD      XXXXXXXXXXXXXXXXXXX    +  S   K+EYT EEMEAEAA 
Sbjct: 61  -HTRHFSSDRXXXXXXXXXXXXXXXXXXXXXXXXSLSKNGGS---KREYTAEEMEAEAAG 120

Query: 121 IGYKVLGPLDQS-EGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180
           IGYKV+GPL+++ +GVFKPYEP FAV+QIGSHQFKVSNGDSIFTERLKFC+VNDKLILNK
Sbjct: 121 IGYKVVGPLEKTDDGVFKPYEPVFAVIQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNK 180

Query: 181 VLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLR 240
           VLLVG+SSQT++GRP VP A V AVVEEH                         ELTKLR
Sbjct: 181 VLLVGTSSQTMIGRPIVPDAAVHAVVEEHALDAKVLIFKKKRRKNYRRTKGHRQELTKLR 240

Query: 241 IVDIQGVEKPENI--GKPSKVAGKKQEQVAVAA 246
           I+DIQG++KPE +   KPSK  GKK E+VAVAA
Sbjct: 241 IIDIQGIQKPEPVVTEKPSKAPGKKPEKVAVAA 263

[Close]

BLAST of CsGy6G018090 vs. TrEMBL
Match: tr|A0A2P5FQP4|A0A2P5FQP4_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_041910 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.4e-58
Identity = 159/273 (58.24%), Postives = 187/273 (68.50%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKT-APSFLSQNFRTHASLSNCLSAKTDPSLCTY 60
           MANRRCL  LTRHASA+FS  P +H L T  P    Q+ +T A+    LS     +    
Sbjct: 1   MANRRCLHTLTRHASALFSKNPSLHSLTTPLPLPTEQSLKTIATKFAFLSTNPGSAWHDQ 60

Query: 61  WPHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAA 120
           W  +R+ SS++ +G +XXXXXXXXXXXXXXXXXXXX  ++      K+EY+ EE EAEAA
Sbjct: 61  WSQSRHFSSNAGDG-DXXXXXXXXXXXXXXXXXXXXEGVALPRAASKREYSPEEREAEAA 120

Query: 121 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180
           AIGYKV+GPL++S+ VFKPYEP FAV++IGSHQFKVSNGD IFTERLKFCDVNDKLILNK
Sbjct: 121 AIGYKVVGPLEKSDRVFKPYEPVFAVIEIGSHQFKVSNGDCIFTERLKFCDVNDKLILNK 180

Query: 181 VLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLR 240
           VLL+GSSSQTI+GRP VP A V AVVEEH                         EL+KLR
Sbjct: 181 VLLLGSSSQTIIGRPIVPDATVHAVVEEHALDAKVLIFKKKRRKNYRRTKGHRQELSKLR 240

Query: 241 IVDIQGVEKPENIGKPS--KVAGKKQEQVAVAA 246
           I DIQG+EKP  + K    K   KKQE+VAVAA
Sbjct: 241 ITDIQGIEKPVTVDKQKTPKTPDKKQEKVAVAA 272

The following BLAST results are available for this feature:

BLAST of CsGy6G018090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144239.1	2.2e-111	90.37	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >XP_011657...	[more]
XP_008464840.1	3.4e-104	85.56	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841...	[more]
XP_023545372.1	2.6e-88	75.93	50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022999749.1	1.7e-87	74.81	50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999750.1...	[more]
XP_022946851.1	2.2e-87	75.19	50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946852...	[more]

BLAST of CsGy6G018090 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30930.1	1.5e-42	57.93	Ribosomal protein L21	[more]
AT1G35680.1	2.2e-12	37.50	Ribosomal protein L21	[more]

BLAST of CsGy6G018090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9A0\|RM21_ARATH	2.8e-41	57.93	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|P24613\|RK21_SPIOL	6.0e-12	55.41	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P...	[more]
sp\|P51412\|RK21_ARATH	3.9e-11	37.50	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|Q54IF0\|RM21_DICDI	6.2e-09	40.24	Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum OX...	[more]
sp\|B8E0B4\|RL21_DICTD	2.2e-06	41.67	50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) OX...	[more]

BLAST of CsGy6G018090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFG2\|A0A0A0KFG2_CUCSA	1.4e-111	90.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1	[more]
tr\|A0A1S3CMX4\|A0A1S3CMX4_CUCME	2.2e-104	85.56	50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620...	[more]
tr\|E5GBZ0\|E5GBZ0_CUCME	2.2e-104	85.56	50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
tr\|A0A2P6Q464\|A0A2P6Q464_ROSCH	1.9e-58	60.44	Putative ribosomal protein L21 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g00084...	[more]
tr\|A0A2P5FQP4\|A0A2P5FQP4_9ROSA	5.4e-58	58.24	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_041910 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR036164	L21-like_sf
IPR001787	Ribosomal_L21
IPR028909	L21p-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009567	double fertilization forming a zygote and endosperm
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0009555	pollen development
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G018090.1	CsGy6G018090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028909	Ribosomal protein L21-like	PFAM	PF00829	Ribosomal_L21p	coord: 143..214 e-value: 8.5E-16 score: 58.0
IPR028909	Ribosomal protein L21-like	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 68..216
IPR001787	Ribosomal protein L21	TIGRFAM	TIGR00061	TIGR00061	coord: 143..212 e-value: 1.6E-12 score: 45.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..105
None	No IPR available	PANTHER	PTHR21349:SF0	39S RIBOSOMAL PROTEIN L21, MITOCHONDRIAL	coord: 68..216
IPR036164	L21-like superfamily	SUPERFAMILY	SSF141091	L21p-like	coord: 143..215

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G018090	Cla021933	Watermelon (97103) v1	cgybwmB427
CsGy6G018090	Csa6G357000	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G018090	MELO3C026533	Melon (DHL92) v3.5.1	cgybmeB406
CsGy6G018090	ClCG08G009370	Watermelon (Charleston Gray)	cgybwcgB454
CsGy6G018090	CSPI06G18620	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G018090	CmaCh05G009780	Cucurbita maxima (Rimu)	cgybcmaB845
CsGy6G018090	CmoCh05G009970	Cucurbita moschata (Rifu)	cgybcmoB826
CsGy6G018090	Lsi08G007880	Bottle gourd (USVL1VR-Ls)	cgyblsiB437
CsGy6G018090	Cp4.1LG11g07940	Cucurbita pepo (Zucchini)	cgybcpeB715
CsGy6G018090	MELO3C026533.2	Melon (DHL92) v3.6.1	cgybmedB405
CsGy6G018090	CsaV3_6G031500	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G018090	Cla97C08G152190	Watermelon (97103) v2	cgybwmbB463
CsGy6G018090	Carg21880	Silver-seed gourd	carcgybB0225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G018090	Cucurbita maxima (Rimu)	cgybcmaB718
CsGy6G018090	Cucurbita moschata (Rifu)	cgybcmoB702
CsGy6G018090	Cucurbita pepo (Zucchini)	cgybcpeB879
CsGy6G018090	Silver-seed gourd	carcgybB0144