Carg21880 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21880
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L21
Location	Cucurbita_argyrosperma_scaffold_111 : 148004 .. 151783 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCATTTCACGTTTAGGCAAACCTCCCTCCCCTCCCTCCCATTTCCAGCCACTGCACCCTGCTCCTTCACAACGCAGTCTCAACCTTCTGACGAAGTCGCCGCCGCCGCCTCCTCCTCCCTGTCACACTCTCTCGCCTCTCGAGCAATCAGTTGCTTATCTCTGTTGTTTTTTTTTTTCTTCTTCTCAGAAACAGAATCGGTGGTTCAGCCCCTTACCTGCGTCGTTCATGAGATCGCATCCTCCTCACATCTAGCGCCGCTCATTTTGTAGATCCCCAAGGTTTTGATTTTTGTTTTGTTTTTCATTTTATTTCGTTGATTTATGTTGTTTATTCTGTTCTCACACGAAGAAGTAAAGCAAAAGAAGAATAATCTTTCTTGTTGATTTCTTTTTCAACTAATGTTAAATCAATCCAAACGAAAACGTAAAACTAAAAATGTATGCATCACGGATTAGGAAAATGCAGATTGAATTACAAAAATTTATTCTTATCCAAATCAATAAATAAAAGGGAACAAAAAAGTTCAAGAAGATTATAAATAAAAGAAGAAAACACATCTGCATGTAATTTGCTTTGGCTAGTAAAAAAAACTAGTTGGAATCGAAAAGCTGTATTGAAAATATTGTTTCAGTTAAAATAGAACAGCAAAATACCGAAAATATGCAGGGTAGTTGGAGGCAAAATATTGTAGCATATACCAAAAAGAAAAATCATAAGTAGGAAAGAACATCAGATAATGCAAGCGATTCTCTGAAAGTGTTTTTGGTGAGCATGTAGAGATTTTCAGGATCGGACTTGAAAGCCCTGCTCCTAAACCCCTCAGGGGAGCTAGAACAAAAACCACAACATACAAAGGAAAATTTTCTTAGACGTTTCCTCCCTACACCGTTCACTTTCTTGTTTCTACAAGATTTTAAAAGGATCCACCGGCCACAAGGAATGACTAGACCTTGAGTTAGCTTGAATGGTGTTGAGTTTGCTTGAATATTGAAAACATTATTGATGCATATGAACTGCCATGAGAAGGGGGTAAATTAATCAAAAGGGATCTCCTAAAAGGTTTAATTGGAAACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTCATACAAACATGCTAATTATATTCAGGGGTTCCAGACAGGGTTTATGTTTTTATTTTATTTCTGCAGACTGAGAAGGTTAGAATATTGCTGCAGCATGTGTAGGTGTTGTCTATAGATCAGAGGCCATTAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCGGCCATCTTTTCCACCAAGCCATATATCCACTCCCTGAAGATCGCACCCTCCTTCCTTTCCCAGAATTTTCGTACACATGCTTCTGTACCAAACTGTCTATTTGCTAAAATCGATCCTTCTTTGTGTACCAACTGGTCACATTCCCGATATCTCTCATCTGATAGTCAGAATGGCAATGAAGATGATGATACTGAAGAAGATGATGATGAAGATGACGAGGATTATGATAGTGGTGAGGATGATGATATTTCAGTGCCGAGTAGGGGTATGCAAAAGGAGTATACAAAGGAGGAGAAGGAGGCAGAAGCAGCTGCTATTGGATATAAAGTAGTTGGGCCAATTGATCGATCTAGTGAGGTTTTCAAGCCTTATGAACCTGTTTTTGCTGTCGTTCAGGTTCAAACTGTTGCATGTATTAATGAGTTTTATGAATTAGTAGTTGGTCTCTTATCATTTATCCACTCTTTTCTTTTGGTGGCTCTTGTAGATTGGCTCACATCAATTCAAGGTTAGCAACGGAGATAGTATTTTTACCGAGAGATTAAAATTCTGCGATGTGAATGACAAGGTTTGCAATTCCTATACCATTGTATGTTGTGGAATTTTTAGATGTAGATCATCCTTTTTTGATTCATACCCTAGCTTTTGGCCATGTTTCCACATGGTGTCCTACTCCCAATCTTTTGATATTTGCAGTCTAACCGAACTAATAATGCTGCATCTCTAAATGGTCTTATAGTGTGTTTGGAATAATGAATGATTTTTCTTTTAAGTACCTTTGGAAAAATTAATAATTTCAAGTTTATGGTATTGCTATGTTGTTTTGATTGGTACAAAGATTCGATGTAGACATAAATTTGGTGGAGCAGTTTTCGGATTTAATAAGTACAGGAGAGCTCCTTTGTTTGTATTAGAAGAGCGCCTAAACACCAACTGTTTTACATACATAAGAAGTTGCACTTTTCTGCTCTTCATAGATGAGGCCAAAATATGTATTTTATTTAATACGAAGTATCGGTTCAGGCTAACTAAACAAGGAAAACATAAATATTTTTCGTTTGGTAGCTTTTATTCACGTTCGTATTGTTGCTCACTTGTGAGATACTTCATCAGAGGACCCCTTTTTCCTTGACAAACTTGAATACTGTTCTGTAGTATTTCTCATGTTTGCTGTTATACCTTGCCTACTTAAGGATTTTGATCATCTGTGTAGAACTTCCATACTGTCATTGGCTTGTTGTTCTTTTCTACATTTCATCTTGAGCAAGCTTTAATGATTATTCTTTTATGAATTTATCTTTTGCAGTTGATATTGAATAAGGTTCTTTTGCTTGGCTCAAGTAGACAAACGATTGTCGGTAGGCCTACCGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGTAAGATTGACAGCTAAACTACTTACTCACATTTTCTTGCTAGTGCATTATATTATAAGAAGAAAATTTTGTTGTGTTTTTACTGATGCTAGCCTGTGGTCTATTACACTTCATTTTCGAAGGACTAATTTTGCTGTTCTTCGTGCACTTTAGGAAATATGCTTCTAGTCTTATGTGCATTTGGGAATCTATATATTAAATAGATTCAAAGCATAGCTCAACTATATTTGAGTTAAAATATATGCGTTCAGCCAAAAGATCAGAAATTTGAATAAATTTGAATCCTTATCCGCACATATTAAACTAAAAATAGGATGTCTTCTACTTCCAATGCGAATGTAAATCTTTCATTTCCTCGCTTTCTTGTTTTCAAATTTGTGTTCCAATTTGTTAGAACTGAATGATCATTCCTCCTTTTCAAAGGCATTGGATGCAAAAGTAATCATCTTCAAGAAAAAAAGAAGGAAGAATTACCGTCGAACCAAGGGACATCGCCAGGTATATATATCCAGACTATCCAATTCGAATAAAAGAGTTTCGTTTTCAAGTCATCTGATGACCTGTTTCTGCAATATTTTGTATCACAGGAATTAACGAAGTTGAGGATCATCGATATCGAAGGCATCGACAAACCAGAAATCATTGAAAAGTCTTCAAAAGTAGCTGGTAAGAATCCAAAACAAGTTTCAGTAGCTGCTTAGTAGAGAAGGCTGCATGATTCTAACTAGCTAGCTTGAATTACTTGATACCTCCTTAAAGAGTGAGTCATATGCTCCCCAACTAGACATGTTTTGTAGGATGGCCAGCCACCATGCTTAGATACCCATTCCATTTCTTTCTTCCATTTCCTGCTAGTTTTCCCCTAAAATGTGATGTCTTCAAATTTGAATTTGCTCATAAGAATTGCTGTTGTTCATTTGAGAACAGTTTGAAATTGCAATGACTATGTATGGTTGATCTTGATTATTGAGATTTGGTATACTCGTATTTGTTGGGAGATTGCTTGCTGGATCATACATTCAATGCCATATGGTTTCTTTTTTTTTATTAAAA

mRNA sequence

ATTTCATTTCACGTTTAGGCAAACCTCCCTCCCCTCCCTCCCATTTCCAGCCACTGCACCCTGCTCCTTCACAACGCAGTCTCAACCTTCTGACGAAGTCGCCGCCGCCGCCTCCTCCTCCCTGTCACACTCTCTCGCCTCTCGAGCAATCAGTTGCTTATCTCTGTTGTTTTTTTTTTTCTTCTTCTCAGAAACAGAATCGGTGGTTCAGCCCCTTACCTGCGTCGTTCATGAGATCGCATCCTCCTCACATCTAGCGCCGCTCATTTTGTAGATCCCCAAGACTGAGAAGGTTAGAATATTGCTGCAGCATGTGTAGGTGTTGTCTATAGATCAGAGGCCATTAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCGGCCATCTTTTCCACCAAGCCATATATCCACTCCCTGAAGATCGCACCCTCCTTCCTTTCCCAGAATTTTCGTACACATGCTTCTGTACCAAACTGTCTATTTGCTAAAATCGATCCTTCTTTGTGTACCAACTGGTCACATTCCCGATATCTCTCATCTGATAGTCAGAATGGCAATGAAGATGATGATACTGAAGAAGATGATGATGAAGATGACGAGGATTATGATAGTGGTGAGGATGATGATATTTCAGTGCCGAGTAGGGGTATGCAAAAGGAGTATACAAAGGAGGAGAAGGAGGCAGAAGCAGCTGCTATTGGATATAAAGTAGTTGGGCCAATTGATCGATCTAGTGAGGTTTTCAAGCCTTATGAACCTGTTTTTGCTGTCGTTCAGATTGGCTCACATCAATTCAAGGTTAGCAACGGAGATAGTATTTTTACCGAGAGATTAAAATTCTGCGATGTGAATGACAAGTTGATATTGAATAAGGTTCTTTTGCTTGGCTCAAGTAGACAAACGATTGTCGGTAGGCCTACCGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCATTGGATGCAAAAGTAATCATCTTCAAGAAAAAAAGAAGGAAGAATTACCGTCGAACCAAGGGACATCGCCAGGAATTAACGAAGTTGAGGATCATCGATATCGAAGGCATCGACAAACCAGAAATCATTGAAAAGTCTTCAAAAGTAGCTGGTAAGAATCCAAAACAAGTTTCAGTAGCTGCTTAGTAGAGAAGGCTGCATGATTCTAACTAGCTAGCTTGAATTACTTGATACCTCCTTAAAGAGTGAGTCATATGCTCCCCAACTAGACATGTTTTGTAGGATGGCCAGCCACCATGCTTAGATACCCATTCCATTTCTTTCTTCCATTTCCTGCTAGTTTTCCCCTAAAATGTGATGTCTTCAAATTTGAATTTGCTCATAAGAATTGCTGTTGTTCATTTGAGAACAGTTTGAAATTGCAATGACTATGTATGGTTGATCTTGATTATTGAGATTTGGTATACTCGTATTTGTTGGGAGATTGCTTGCTGGATCATACATTCAATGCCATATGGTTTCTTTTTTTTTATTAAAA

Coding sequence (CDS)

ATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCGGCCATCTTTTCCACCAAGCCATATATCCACTCCCTGAAGATCGCACCCTCCTTCCTTTCCCAGAATTTTCGTACACATGCTTCTGTACCAAACTGTCTATTTGCTAAAATCGATCCTTCTTTGTGTACCAACTGGTCACATTCCCGATATCTCTCATCTGATAGTCAGAATGGCAATGAAGATGATGATACTGAAGAAGATGATGATGAAGATGACGAGGATTATGATAGTGGTGAGGATGATGATATTTCAGTGCCGAGTAGGGGTATGCAAAAGGAGTATACAAAGGAGGAGAAGGAGGCAGAAGCAGCTGCTATTGGATATAAAGTAGTTGGGCCAATTGATCGATCTAGTGAGGTTTTCAAGCCTTATGAACCTGTTTTTGCTGTCGTTCAGATTGGCTCACATCAATTCAAGGTTAGCAACGGAGATAGTATTTTTACCGAGAGATTAAAATTCTGCGATGTGAATGACAAGTTGATATTGAATAAGGTTCTTTTGCTTGGCTCAAGTAGACAAACGATTGTCGGTAGGCCTACCGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCATTGGATGCAAAAGTAATCATCTTCAAGAAAAAAAGAAGGAAGAATTACCGTCGAACCAAGGGACATCGCCAGGAATTAACGAAGTTGAGGATCATCGATATCGAAGGCATCGACAAACCAGAAATCATTGAAAAGTCTTCAAAAGTAGCTGGTAAGAATCCAAAACAAGTTTCAGTAGCTGCTTAG

Protein sequence

MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNWSHSRYLSSDSQNGNEDDDTEEDDDEDDEDYDSGEDDDISVPSRGMQKEYTKEEKEAEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDIEGIDKPEIIEKSSKVAGKNPKQVSVAA

Homology

[Close]

BLAST of Carg21880 vs. NCBI nr
Match: XP_023545372.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545373.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545374.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545375.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459.9 bits (1182), Expect = 5.9e-126
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
           SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of Carg21880 vs. NCBI nr
Match: XP_022946851.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946852.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946853.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946854.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 454.9 bits (1169), Expect = 1.9e-124
Identity = 265/270 (98.15%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHA AIFSTKPYIHSLKI PSFLSQNFRTHASVPNCLFAKIDPSLCTNW
Sbjct: 1   MANRRCLQVLTRHALAIFSTKPYIHSLKIVPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
           SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXX SVPSRGMQKEYTKEEKEAEAA+
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXISVPSRGMQKEYTKEEKEAEAAS 120

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of Carg21880 vs. NCBI nr
Match: XP_022999749.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999750.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999751.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999752.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 450.7 bits (1158), Expect = 3.6e-123
Identity = 263/270 (97.41%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAIFSTKPYIHSLKI+PSFLSQNFRTH SVPNCLFAK+DPSLCTNW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKISPSFLSQNFRTHVSVPNCLFAKLDPSLCTNW 60

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
           SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXX VPSRGMQKEYTKEEKEAEAA+
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSRGMQKEYTKEEKEAEAAS 120

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVVGPIDRSS VFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of Carg21880 vs. NCBI nr
Match: XP_004144239.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >XP_011657340.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >KGN47534.1 hypothetical protein Csa_6G357000 [Cucumis sativus])

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 230/270 (85.19%), Postives = 243/270 (90.00%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAIFSTKPYIH LK APSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           +DI+G++KPE I K SKVA K  +QV+VAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of Carg21880 vs. NCBI nr
Match: XP_008464840.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >ADN33989.1 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo])

HSP 1 Score: 386.7 bits (992), Expect = 6.3e-104
Identity = 225/270 (83.33%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAI STKPYIH+LKIAPS L +NF THAS+ NCL AK DPSLCT W
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
           SH+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  +FKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LL+GSS QTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           +DI+GI+KPE I K SKV  K  +QV+VAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of Carg21880 vs. TAIR10
Match: AT4G30930.1 (Ribosomal protein L21)

HSP 1 Score: 224.2 bits (570), Expect = 9.9e-59
Identity = 114/153 (74.51%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 109 YTKEEKEAEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKF 168
           Y+  EK  EA  IGYKV+GP+  S  +FKPYEPVFA+VQIGSHQFKVSNGDSIFTE+LKF
Sbjct: 107 YSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKF 166

Query: 169 CDVNDKLILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRT 228
           CD+NDKL L KVLLLGS+ QTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT
Sbjct: 167 CDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRT 226

Query: 229 KGHRQELTKLRIIDIEGIDKPE--IIEKSSKVA 260
           +GHRQELTKLRI DI+GI+KPE  I+ K SK A
Sbjct: 227 RGHRQELTKLRITDIQGIEKPEPKIVHKPSKEA 259

[Close]

BLAST of Carg21880 vs. TAIR10
Match: AT1G35680.1 (Ribosomal protein L21)

HSP 1 Score: 108.2 bits (269), Expect = 7.9e-24
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 113 EKEAEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 172
           E E E   I   VV  +   +E     E +FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 173 DKLILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 232
           D+++LNKVLL+G+   T +G+P V +A V AVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 233 QELTKLRIIDIEGIDK 249
           Q  T++RI  I G ++
Sbjct: 191 QPNTRIRITGITGYEE 206

[Close]

BLAST of Carg21880 vs. Swiss-Prot
Match: sp|Q8L9A0|RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.8e-57
Identity = 114/153 (74.51%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 109 YTKEEKEAEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKF 168
           Y+  EK  EA  IGYKV+GP+  S  +FKPYEPVFA+VQIGSHQFKVSNGDSIFTE+LKF
Sbjct: 107 YSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKF 166

Query: 169 CDVNDKLILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRT 228
           CD+NDKL L KVLLLGS+ QTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT
Sbjct: 167 CDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRT 226

Query: 229 KGHRQELTKLRIIDIEGIDKPE--IIEKSSKVA 260
           +GHRQELTKLRI DI+GI+KPE  I+ K SK A
Sbjct: 227 RGHRQELTKLRITDIQGIEKPEPKIVHKPSKEA 259

[Close]

BLAST of Carg21880 vs. Swiss-Prot
Match: sp|P24613|RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-24
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 142 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGSSRQTIVGRPTVPSAVV 201
           +FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLL+G+   T +G P V +A V
Sbjct: 123 IFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAV 182

Query: 202 QAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDIEGID 248
            AVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G +
Sbjct: 183 HAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 228

[Close]

BLAST of Carg21880 vs. Swiss-Prot
Match: sp|P51412|RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 113 EKEAEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 172
           E E E   I   VV  +   +E     E +FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 173 DKLILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 232
           D+++LNKVLL+G+   T +G+P V +A V AVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 233 QELTKLRIIDIEGIDK 249
           Q  T++RI  I G ++
Sbjct: 191 QPNTRIRITGITGYEE 206

[Close]

BLAST of Carg21880 vs. Swiss-Prot
Match: sp|A8GYB4|RL21_RICB8 (50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-17
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 142 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGS-SRQTIVGRPTVPSAV 201
           +FAV++ G  Q+KV     I  E+++  ++  K+ LN+VL++G  S+ + +G P V  AV
Sbjct: 1   MFAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAV 60

Query: 202 VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDI 244
           V A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 61  VTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

[Close]

BLAST of Carg21880 vs. Swiss-Prot
Match: sp|Q1RGM7|RL21_RICBR (50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-17
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 142 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGS-SRQTIVGRPTVPSAV 201
           +FAV++ G  Q+KV     I  E+++  ++  K+ LN+VL++G  S+ + +G P V  AV
Sbjct: 1   MFAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAV 60

Query: 202 VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDI 244
           V A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 61  VTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

[Close]

BLAST of Carg21880 vs. TrEMBL
Match: tr|A0A0A0KFG2|A0A0A0KFG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 9.0e-107
Identity = 230/270 (85.19%), Postives = 243/270 (90.00%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAIFSTKPYIH LK APSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           +DI+G++KPE I K SKVA K  +QV+VAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of Carg21880 vs. TrEMBL
Match: tr|A0A1S3CMX4|A0A1S3CMX4_CUCME (50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 4.2e-104
Identity = 225/270 (83.33%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAI STKPYIH+LKIAPS L +NF THAS+ NCL AK DPSLCT W
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
           SH+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  +FKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LL+GSS QTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           +DI+GI+KPE I K SKV  K  +QV+VAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of Carg21880 vs. TrEMBL
Match: tr|E5GBZ0|E5GBZ0_CUCME (50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 4.2e-104
Identity = 225/270 (83.33%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60
           MANRRCLQVLTRHASAI STKPYIH+LKIAPS L +NF THAS+ NCL AK DPSLCT W
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120
           SH+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  +FKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           LL+GSS QTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           +DI+GI+KPE I K SKV  K  +QV+VAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of Carg21880 vs. TrEMBL
Match: tr|A0A2P5CBP7|A0A2P5CBP7_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_166270 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 189/277 (68.23%), Postives = 217/277 (78.34%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKI-APSFLSQNFRTHASVPNCLFAKIDPSLC-- 60
           MANRRCL  LTRHASA+FS  P +HSL    P    Q+ +T A+     F   +P     
Sbjct: 1   MANRRCLHTLTRHASALFSKNPSLHSLTTPLPLLTEQSLKTIAT--KFAFVSTNPGSAWH 60

Query: 61  TNWSHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSV--PSRGMQKEYTKEEKE 120
             WS SR+ SS++XXXXXXXXXXXXXXXXXXXXXXXXX    V  P  G ++EY+ EEKE
Sbjct: 61  DQWSQSRHFSSNAXXXXXXXXXXXXXXXXXXXXXXXXXDDEGVALPRGGSKREYSPEEKE 120

Query: 121 AEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKL 180
           AEAAAIGYKVVGP+++S  VFKPYEPVFAV++IGSHQFKVSNGD IFTERLKFCDVNDKL
Sbjct: 121 AEAAAIGYKVVGPLEKSDRVFKPYEPVFAVIEIGSHQFKVSNGDCIFTERLKFCDVNDKL 180

Query: 181 ILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL 240
           ILNKVLLLGSS QTI+GRP VP A V AVVEEHALDAKV+IFKKKRRKNYRRTKGHRQEL
Sbjct: 181 ILNKVLLLGSSSQTIIGRPIVPDATVHAVVEEHALDAKVLIFKKKRRKNYRRTKGHRQEL 240

Query: 241 TKLRIIDIEGIDKPEII--EKSSKVAGKNPKQVSVAA 271
           +KLRIIDI+GI+KP  +  +K+ K   K  ++V+VAA
Sbjct: 241 SKLRIIDIQGIEKPVTVDKQKTPKTHYKKQEKVAVAA 275

[Close]

BLAST of Carg21880 vs. TrEMBL
Match: tr|A0A251PFR3|A0A251PFR3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G047500 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 190/279 (68.10%), Postives = 214/279 (76.70%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSF-LSQNFRTHASVPNCLFAKIDPSLCTN 60
           MANRR LQVLTRHASA+FST     SL+  P   + Q  +T  S    +F   DP    N
Sbjct: 3   MANRRRLQVLTRHASALFSTNTTFQSLQTTPPLPIYQPLKTLTSKFPLIFTNPDP----N 62

Query: 61  WSHSRYLSS--------DSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTK 120
           WS +R+ SS        D XXXXXXXXXXXXXXXXXXXXXXXXXXXX V   G ++EYT 
Sbjct: 63  WSQTRHFSSSRIGDVNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGCGSKREYTA 122

Query: 121 EEKEAEAAAIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDV 180
           EEKEAEAAAIGY+V+GP+ +S  VFKPYEPVFAVVQIGSHQFKVSNGD IFTERLKFC+V
Sbjct: 123 EEKEAEAAAIGYQVIGPLQKSDRVFKPYEPVFAVVQIGSHQFKVSNGDCIFTERLKFCEV 182

Query: 181 NDKLILNKVLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 240
           NDKLILNKVLLLGSS QTI+GRP +P A V AVVEEHALDAKVIIFKKKRRKNYRRTKGH
Sbjct: 183 NDKLILNKVLLLGSSSQTIIGRPLLPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGH 242

Query: 241 RQELTKLRIIDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 271
           RQELTKLRI+D++GI+K           G+ P++V+VAA
Sbjct: 243 RQELTKLRIVDVQGIEKXXXXXXXXXXXGRKPEKVAVAA 277

The following BLAST results are available for this feature:

BLAST of Carg21880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545372.1	5.9e-126	99.63	50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022946851.1	1.9e-124	98.15	50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946852...	[more]
XP_022999749.1	3.6e-123	97.41	50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999750.1...	[more]
XP_004144239.1	1.4e-106	85.19	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >XP_011657...	[more]
XP_008464840.1	6.3e-104	83.33	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841...	[more]

BLAST of Carg21880 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30930.1	9.9e-59	74.51	Ribosomal protein L21	[more]
AT1G35680.1	7.9e-24	41.91	Ribosomal protein L21	[more]

BLAST of Carg21880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9A0\|RM21_ARATH	1.8e-57	74.51	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|P24613\|RK21_SPIOL	4.4e-24	54.72	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P...	[more]
sp\|P51412\|RK21_ARATH	1.4e-22	41.91	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|A8GYB4\|RL21_RICB8	3.1e-17	46.60	50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
sp\|Q1RGM7\|RL21_RICBR	3.1e-17	46.60	50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]

BLAST of Carg21880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFG2\|A0A0A0KFG2_CUCSA	9.0e-107	85.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1	[more]
tr\|A0A1S3CMX4\|A0A1S3CMX4_CUCME	4.2e-104	83.33	50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620...	[more]
tr\|E5GBZ0\|E5GBZ0_CUCME	4.2e-104	83.33	50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
tr\|A0A2P5CBP7\|A0A2P5CBP7_PARAD	4.1e-75	68.23	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_166270 PE=3 SV=...	[more]
tr\|A0A251PFR3\|A0A251PFR3_PRUPE	1.0e-73	68.10	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G047500 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR036164	L21-like_sf
IPR018258	Ribosomal_L21_CS
IPR001787	Ribosomal_L21
IPR028909	L21p-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21880-RA	Carg21880-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028909	Ribosomal protein L21-like	PFAM	PF00829	Ribosomal_L21p	coord: 143..243 e-value: 1.0E-32 score: 112.3
IPR028909	Ribosomal protein L21-like	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 68..249
IPR001787	Ribosomal protein L21	TIGRFAM	TIGR00061	TIGR00061	coord: 143..243 e-value: 6.5E-26 score: 88.7
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 142..245 score: 21.948
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..111
None	No IPR available	PANTHER	PTHR21349:SF0	39S RIBOSOMAL PROTEIN L21, MITOCHONDRIAL	coord: 68..249
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 214..236
IPR036164	L21-like superfamily	SUPERFAMILY	SSF141091	L21p-like	coord: 143..243

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21880	Cla021933	Watermelon (97103) v1	carwmB0199
Carg21880	Csa6G357000	Cucumber (Chinese Long) v2	carcuB0236
Carg21880	MELO3C026533	Melon (DHL92) v3.5.1	carmeB0216
Carg21880	ClCG08G009370	Watermelon (Charleston Gray)	carwcgB0205
Carg21880	CSPI06G18620	Wild cucumber (PI 183967)	carcpiB0242
Carg21880	Cucsa.077520	Cucumber (Gy14) v1	carcgyB0255
Carg21880	CmaCh05G009780	Cucurbita maxima (Rimu)	carcmaB0290
Carg21880	Lsi08G007880	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21880	Cp4.1LG11g07940	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21880	CsGy6G018090	Cucumber (Gy14) v2	carcgybB0225
Carg21880	MELO3C026533.2	Melon (DHL92) v3.6.1	carmedB0221
Carg21880	CsaV3_6G031500	Cucumber (Chinese Long) v3	carcucB0240
Carg21880	Cla97C08G152190	Watermelon (97103) v2	carwmbB0214

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21880	Silver-seed gourd	carcarB159
Carg21880	Silver-seed gourd	carcarB247
Carg21880	Silver-seed gourd	carcarB248
Carg21880	Cucurbita maxima (Rimu)	carcmaB0289
Carg21880	Cucurbita moschata (Rifu)	carcmoB0294
Carg21880	Cucurbita moschata (Rifu)	carcmoB0295
Carg21880	Cucurbita moschata (Rifu)	carcmoB0296
Carg21880	Cucurbita pepo (Zucchini)	carcpeB0298
Carg21880	Cucurbita pepo (Zucchini)	carcpeB0299