Lsi08G007880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G007880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L21, related protein
Location	chr08 : 16289220 .. 16297072 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGGAGAGAGGCGGCAGCAGCACTGAGGGTGGAGAGAGGCGGCGACTGCGGCAATAACAGAAGGGATGCGCGGTGGCGGCCGCAATGCGAGCGGGAGAAGGGCGGCGAGGCGTTGATAACTGTTAAAATGGAGGGGAGTCGGCGTTCCGACGTGAAGAGTAGTGAGAAGGGGTGAAGAAGGTAGCCCAATCAGGCTTATGTTTCGTTATTGTTTGTTCAACGTTACCATATTTTATATATTCTCTCAATTGGAATTCTAAATGTGGCTACAAATCAAAAAATCAAAAAATAAAAATCCTCTCCTTTTCCTACGGTAGTTTAAAATAACTATGCTCTTCCTCTCTCTAAAGTTTACAATGACTCTACCTGCTACTGATCTACTCTAATAAAGACAACTTTTGAATGCCCTAATTTCTGCGACCACGATCTCTTGCTACTAGTTCTAAAAACTATTTTTTGGTGGCTAACTTTGACAATCATCTTTGAAGACCACTTATGCGATTAACTCCAATGATTAACTCTGACTACCAGTTATAGTGTTTAATCTTCTTTTATAGTAATTTGACAATAATATAAACACTGGTTGTTTGGGAGTCAGGTTCGAGATAGGATAGAGTTGTAATGTAATCCAAAACTCATGTTTGGATTGAACGTCTTGGGTCCAAGACTTTGCTATGGCTATCAATGATGATTAGTGATAGACTTCTATCACCAATAACAAAATCTATTAGTGATAAACTTTTATCACTTAATAGCAAAATCTATCACTAGTAGAAATATGTCATCTATCTATCAATGATTGAGTCTATCATTGATACTCCTATCATGGATAGACTCTATCAGTGATATGATGTATCACCAATAAACTCTATCAATGGTATGAGGTATCACCAATAGACTCTATTAGTGATTAGAGTCTATAATTTATAGGCTTATATTATTTGAAATCCATCAATGATAACCAATGATAGAGATTCCATCAAATTACTTTAAATATTTTGTTGAGTTATCGATGAAAGAAATGGAGAAGACAAAATTGGAGGAAGAAAGTAAGAAAATGAAGAAAAATAACAAATATTCGTTTGAAATCTGTCAGTGATATTAGAGATAGGATTTGTGTTAGTTCTGCATTGTGATTGAAATCTATCGGTCATGTCTATCGATCATTGATAGATTTAGGTTTTGAATCGAAGGTAGGTTAGTGATAGACTAATAACTATAATAAAATCTATACCGATAGAAATTAACATGGGCACAATTCAACTAACACGTGACATAAACTTTAAATGAAAAGAGTCAAAAGTTTGAATCTCATAATTATTGTGCTAAAGGAACATGATGATAAACACCAACAAAATAACAAGAGAGAGGAAAAGGAACTTGTAAAAAAGGGAAAAGTCAATGAAGACCAAATATAACTAAAGAAAGAGAATACTATACATTTGGGTATATAATGAAAATGAAAGAAAAAAATGACAAAGTTGAGAAGGAAAATTCTAATGTTAATATAGAATAACGAGAAACAAGATGAACAAAAATGTTAAAAGAGATCATTTGAAAGAAAAATTCGAACCAAAAGGTAAGAGGATATAATCTCCCAATAGCACATGTTGTTGAATGCATAAAGAAAAAAATTAAAATAAATAAGGAAAATTGAGAAAATTGCTACATTTGCAATTCCTGAAAAATGTTGCTATATACTTAATAATTAGCCCTAAAAATTGTTATTCATTACAATTACTCTTCTTTTAATATGTCTCCTTTTCAACTATTGTTTTCCTTTATTTCATTATGATCTAAATTCCTTCTAGAGATTCCAATATGTAAATATCATAAGGAAGGAGAATATACCTTTCATGCACAAAAAATAATTTTTCTATTTCAATAGTATGGTTTGCTTTTATTCAATTTATTTTTATTATTAGTTTGAATCGATCACCTAAATTAGTATACAAAAGTTAAGTCTAATATTAAAAGGGCTTGGTGAAACTTGGTTTCCATAAAAGCAATATAGGAAAAGATTTTAGACATAAGTCTTTGTTTTTTACCTTAAACATAGGACAAAATCGGTAGAATCTTGGATTGTGTTCTTATTTATATAAGTACCTATTAATCATAGACGTATAGGTTTAATGACTTAAACTCTTAAAGATACTTCCTTGAAGGTTGAATAGGTGTTGAATCTAGTTCTTTGTGCTAAAGTTTGAATCAAAATTGCATCCTGCTTGAAAGGTGACATTCTCCTACCAAAGTCTATGCGCATATTTGAGTTTTATCTTATTATTGTCATTTTCAATCTGGTTCACGTAACCAACCATCTCCCAATGATTTTTGTCGGTTAACTTGCACTTGCATCTTTGAGAAAAATCTTGTTCACTTTAGACTTTTGTTACATTCATTCCATTGGGTTCGATATCTAAAGTACCACTTGTATTACTTGCTGATAGTGTGAGCTTGCATTAAGAACCAAAGCTCATTTATTCTTTATAAGACTACACATCACAAGCTACGTCTTAGTCGCATTCATTAGTGATCGTCGAAATTGGGCACCAGTCGTCGCCAAACTTGATCATTAGAGGTGATCTTTGCCAATTTTTTTTGGTGAATTAAAGTTAGTCGATGGAGATAATCTACGAAGTTGGTTGTCTGAGGTGATCGTCAGAGTTGTCCGACAAAGGTGGACCTCGCCGGTGTTGATCATTAGAGGTAGTCTTTGCCAGAATTTTTGTCAAAGGTGGTCTTCAACGAAGGTGATTGTCGAAGTTGATTGCCAGAGTTAGCCTCGTGAAGGTGGTCACCGAGTGAGGCAATGGTAGTCATCAGCGAGTAGAGCCGTTGGAAACATTTGAGATAAAGAGAGTCAAAGTTCATAATTGTTATTAACTCAACCCAACTAATGTTAGTAACCCGACCGCAAAGTAACTAAATGTAACTATTATTCAAAGAGATATTTTCAAATATAGCAAAAAAAATATAACTACTATCTATCACTATTTTATGATATCGATAGATATCTATCACTTTGCTATATTTAAAAATATTTTCAGCATGTTTGTTATTTAAAATAATTGCCCTTCTTCTAAGGAACCGAAAAAACTTTTTTTTTTTAAGCTGTTGTAGCTTTCCTTTTTCTAAACCCTATTTCATTTCACGTCGAGCCACACCTCCATCCCTTCTCACCCTCACTTTCATGACCAGCCACCGCACACCACTGCTGCACGCCGCACGCCACTCCATCCCGACGTGATTTCGGCGACTACAGCCGCCCGCTGCACTTTCAGCTGCCGCAGTCTCAACCTCCCGACGAAGTCTCCGCCGCTTCCTCCCTCTTACACTCTCTCGTCTCTCGACCAATCAGAGTTGCGTATCTCTGTTTTCTTTTCCTTCTCAGAAACAGAAAGTGGTTCAGCCCCTAACCCGCGCCGTTGGTGAGATCGCACCGCCCCTCACGCCCACTGCCGGCCATTTTTCAGATCCCCGAGGTTTTGATTTTTGTTCTATTTTTCATTTTGTTTCGTTGATTATGTTGTTTAATATGGTCACCCAGAAAGAAGTAAAGCAAAAGAAACATAATTTTTTTTTTTGTCGATTTATTATTCAGCCAATGTTTAACCATTCCAAATGAAAACATAAAACAGAAAATGTATACATCACAGATTAAGAAAATAGTTGAACAGAATTTGTTCAACTGTGTCTTTGAGTTCTAAGTATTAGGAAAATAGCAAATTGAATCAATAAATAAAAATGAAAAAAAAAATATTATTCTTATCCAAAAAGCGAACAGAAGAGTTCAAGAAACTTACGAAGCAAAAAAGAAAACTGACCTTTATGTAAACTTGTTGGAATAAAAAAGCTGTATTGAAAACATTGTTTCAATTTAAAAAGAACAGCAAAATGCCATGGAAAAACAGAATAGAAACACATAAAAGGATCAACTGGAACAAGGAATGAGTAAACCTGGAGTTTGCTTGAATATTGAAAAAATTATTGATGCATAACTGGTGTAGGGAGGGGTAAACAAAAATAAAGGAGGATCTCCTGTAGGATAAAATGGGAAACACATTTTTTTTTTTTTCAAAATTTAAAATCCTCCAAATTTCGACCTGTTTGGAATATAATTTTTTTCTTTTAAAAAAAACAGGATTTCAAATCACAACAATTCCAAATTCTTCTCTTCCTTTTTTTTTTCTATTCAAACATGCTGATCAAATTCAGGGGTTCCCAACATGGGCTTATGTTTTTATTTTCTTTCTGCAGATTGAGAAGTTTAGAATATTGCTGCAGCATGTGTAGGAGTTGTACATAGATTGAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCATCGGCCATTTTTTCCACCAAGCCATATATCCACCCACTGAAAATTGCACCTTCCATCCTTTCCCAGAACTTTCGTACACATGCTTCTATATCAAATTGTCTTTCTACTAAAATGGTTCCTTCTTTGTGTACCTACTGGTCACATACCCGATACCTCTCATCTGATAGTCGGAATGGCAATGAAGATGATGATATTGAAGAAGATGAGGATGAAGATGAAGATGACGAAGCATATGATAGTAGTGAGGATGATGGTATTTCCGTGTCGAGTAGGGGTATGCTAAAGGAGTATACAAAGGAGGAGAAGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTAGTAGGGCCACTTGATCAATCTAAAGGAGTTTTCAAGCCTTATGAACCTGTTTTTGCTGTTGTTCAGGTTCAAACTTGTGGCATGTCTTAACGAGTTTTATGAATTAGTAGTTGGACAGTAATCATTTATCCACTCTCTTCTTTTGGCTACTCTTGTAGATTGGCTCACACCAATTCAAGGTTAGCAATGGAGATAGTATTTTTACTGAGAGATTAAAATTCTGCGATGTGAATGACAAGGTTTGCAAGTCCTATACTATTCTTCATTGTCGATATTTTAGATATAGTTTATCAGTTTTTATTAGACATGCTAGCTATTGGCCATGTTTCTACATGGTCTCCTGCTCCCAATCTTGATATGAGTCGTCCAACCAGATTAGTAATGCTGTATCTATTAATTTTTTCGTAGGTACTTGTTGAAAAAATAATTTAGTTTAAAAAGCATTTTTTCGGAAGTTATTTCGAACACAATATTTCACTTGGGAGCAATTTTCGGAACCTAGAACTGAAATATTGTATGATTTAAGATTGTACTCATACTTTTTTCTATTCTGCTGTTGTTTCCAGGTTGTAATTTGGAAAGCTAAATTTTTTGCTATGCTATGTTGTTTTGATTGGTACAAGGATTTGACTTAAACATTAATTTGACGGGCTGAAAAGCAGTTTTTAGATGAATAAGTATAAGTATAGAAGAGCTCCTTTGTTTTTTTGTCAGCGTGACAAATATAGTAGAGCTCCTAAAAAGCAATTGTTTTACATACATTAGAAGTTGCACTTTTCAGCTTGTCATAGATGAGGCTAAAATATGTAGTGATGTATTTTATTTAGTACGAAGAATTGCTTCAAGCTAACTAAAGAACCTGGAAAATATGTTATCGTTTGGTAGCTTTTATTCAAGTTCTTATTGTGTTATCACATGTGAGATACTTCAGAAGGGGATCTTTTATGGCATTTCTATTGCCCTTTTGCCTTGTCAGATTTGAATGCTGTTCTGTAGATTTTCTCAGGTTTGCTGTTATACCTTGTCTGCTTGATTTTGATTATCTGTGTTGAACTTCTGTACTGTTATTGACTAAAATTCTTTTATGTATTTCATCTTCAGCAAGCTTTAATGAGTATTATTTTATGTATTTATCTTTTGCAGTTGATATTGAATAAGGTTCTCTTACTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGTAAGAGTGACAGCTAAACTACTTACTCGCTTTTTTTTTTGCTAATGCAATATATTGTAGGATTCTTTTTTTGCTGTTGTGGTTTTACTGATGTTGCCCAGTGATTCTTGTGGACTGTTACCATGTCTTTTTTAAGGACTAATTGTCTAGTTCTTTGTGCGATTTAGAAAATACACATCTAGTCATAGCTGCATTTGGAACCTATATATTAAATGGATGTAAACAAAGAACCAATTGCCAACTTGAGCGTAGCACAATTAGGTAAGATATAGCTTTCAACCAAAAGATCAAATGTTTGAATTCCTATCCGCACATGTTGAACTCAAAGAGTAGGAATATCAATTTGTAAGCCAAATTTATCTACTTTTAATATATTCAGGCATCGAGTTAGATGTTATGAATGTGTCAACCTAGTTGAACTATCATGGGTTAGCCTAGTGGTAAAAAAGGAGACAAAGTCTCAATATATGGCTAAGAGGTCATGGGTTCAATCCATGGTGGCCACCTACCTAGGAATAAATTTCCTACGAGTTTCCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTGTCCCGTGAGATTAGTTGAGGTGCGCGTAAGCTGGCCCAGACACTCACGGATATCAAAAAAAAAAAAAAAAAAATTGTCAACCTAGTTGAGATATTCGCAACCTAGTTAAGATATTCAGGTGTATCTATTGATCTCAAGTTTCTCTTGATTATTACTATTTCTCATTGTAATTTGAGCAATAGTCTCTTTTCATTTCATCAATGAAAAGTCTTGTTTCTGTTTCAAAATAATAATAATAATAATAACAAAATCTGGAGAATTAATAACAGTGTTCAGAAGTGTCTAAAAGGCATTTTCTTGTAGCAATTGTTGCTTAAAAGGATTATGGAATAGCAGAGGGGTTCGGTAAATGAATTGACCAAGTTGTCTGTGTGTCCTACTTTCTTCCAATTCTAATTCTGCAGTATTAAGTGTAATATATTTGTTTTTTTAGTAAAATTTATGTGCTGTGATCATCTGTGTTGTTCTGTCATGGTTGGTCTGCGAATGTAAATCTTTCTTTTCCCCTTGTGCTTTTTTATTTTTTTCCCCTTATTTTTTTTGTTTCCAAATTTCCAACTGGCAACCACATATTTTCTTGGAAGTCATTCTCAAATTTGTGTTTCAATTGTGACCTGAATGATTTTTTCTCCTTTTCAAAAGGCATTAGATGCAAAAGTTATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGGAGAACCAAAGGACATCGCCAGGTATATCCAGACTATCCAGAAAGAATAAAAGAGTTTCTTATTCAAGTTATCTGATGACCTTTTTTTTGCTATGTTTACTATGTCAGGAATTAACGAAGTTGAGGATTATCGATATCCAAGGTGTTGAAAAGCCAGAGAACATTGGAAATCCTTCAAAAGTAGCTGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAGTAGATTGTTCCATGATTCTTACTAGCTAAAATTGCTAAGTTGGATCTCCTAATTCCTTAGAAGTGTGTCCTTTTCTCCCAACTAGGCTTGTTTTGTAGGAAGGCCACTATCCTAGGATTCTCATTTCTTTTCTTCCTTTTCCTGGTAATTTTCCCCAAAAATGTGATGTCTTCTATTTAAATAATTTGAATTTTCTCATAAGAATTGTGGTCATACATTTGAGAAGAGTTTGGAATTGTATCGACTAGGATTTTTGCCATATATGTATGGTAGATTTTGAGTTTCTTGATTTGTTGGGAGGAGCTTACAGGATCATACATTCAATACATACATTTTCTTTTATTTTTTAAATCTGCACAAGGATCTCAAACATGAATCAAGTTGTAGCTTTTTAGTTTCTCAAA

mRNA sequence

ATGAACAGGAGAGAGGCGGCAGCAGCACTGAGGGTGGAGAGAGGCGGCGACTGCGGCAATAACAGAAGGGATGCGCGGTGGCGGCCGCAATGCGAGCGGGAGAAGGGCGGCGAGGCGTTGATAACTGTTAAAATGGAGGGGAGTCGGCGTTCCGACGTGAAGAGTAGAGTTGTACATAGATTGAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCATCGGCCATTTTTTCCACCAAGCCATATATCCACCCACTGAAAATTGCACCTTCCATCCTTTCCCAGAACTTTCGTACACATGCTTCTATATCAAATTGTCTTTCTACTAAAATGGTTCCTTCTTTGTGTACCTACTGGTCACATACCCGATACCTCTCATCTGATAGTCGGAATGGCAATGAAGATGATGATATTGAAGAAGATGAGGATGAAGATGAAGATGACGAAGCATATGATAGTAGTGAGGATGATGGTATTTCCGTGTCGAGTAGGGGTATGCTAAAGGAGTATACAAAGGAGGAGAAGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTAGTAGGGCCACTTGATCAATCTAAAGGAGTTTTCAAGCCTTATGAACCTGTTTTTGCTGTTGTTCAGATTGGCTCACACCAATTCAAGGTTAGCAATGGAGATAGTATTTTTACTGAGAGATTAAAATTCTGCGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTACTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCATTAGATGCAAAAGTTATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGGAGAACCAAAGGACATCGCCAGGAATTAACGAAGTTGAGGATTATCGATATCCAAGGTGTTGAAAAGCCAGAGAACATTGGAAATCCTTCAAAAGTAGCTGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAGTAGATTGTTCCATGATTCTTACTAGCTAAAATTGCTAAGTTGGATCTCCTAATTCCTTAGAAGTGTGTCCTTTTCTCCCAACTAGGCTTGTTTTGTAGGAAGGCCACTATCCTAGGATTCTCATTTCTTTTCTTCCTTTTCCTGGTAATTTTCCCCAAAAATGTGATGTCTTCTATTTAAATAATTTGAATTTTCTCATAAGAATTGTGGTCATACATTTGAGAAGAGTTTGGAATTGTATCGACTAGGATTTTTGCCATATATGTATGGTAGATTTTGAGTTTCTTGATTTGTTGGGAGGAGCTTACAGGATCATACATTCAATACATACATTTTCTTTTATTTTTTAAATCTGCACAAGGATCTCAAACATGAATCAAGTTGTAGCTTTTTAGTTTCTCAAA

Coding sequence (CDS)

ATGAACAGGAGAGAGGCGGCAGCAGCACTGAGGGTGGAGAGAGGCGGCGACTGCGGCAATAACAGAAGGGATGCGCGGTGGCGGCCGCAATGCGAGCGGGAGAAGGGCGGCGAGGCGTTGATAACTGTTAAAATGGAGGGGAGTCGGCGTTCCGACGTGAAGAGTAGAGTTGTACATAGATTGAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCATCGGCCATTTTTTCCACCAAGCCATATATCCACCCACTGAAAATTGCACCTTCCATCCTTTCCCAGAACTTTCGTACACATGCTTCTATATCAAATTGTCTTTCTACTAAAATGGTTCCTTCTTTGTGTACCTACTGGTCACATACCCGATACCTCTCATCTGATAGTCGGAATGGCAATGAAGATGATGATATTGAAGAAGATGAGGATGAAGATGAAGATGACGAAGCATATGATAGTAGTGAGGATGATGGTATTTCCGTGTCGAGTAGGGGTATGCTAAAGGAGTATACAAAGGAGGAGAAGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTAGTAGGGCCACTTGATCAATCTAAAGGAGTTTTCAAGCCTTATGAACCTGTTTTTGCTGTTGTTCAGATTGGCTCACACCAATTCAAGGTTAGCAATGGAGATAGTATTTTTACTGAGAGATTAAAATTCTGCGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTACTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCATTAGATGCAAAAGTTATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGGAGAACCAAAGGACATCGCCAGGAATTAACGAAGTTGAGGATTATCGATATCCAAGGTGTTGAAAAGCCAGAGAACATTGGAAATCCTTCAAAAGTAGCTGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAG

Protein sequence

MNRREAAAALRVERGGDCGNNRRDARWRPQCEREKGGEALITVKMEGSRRSDVKSRVVHRLKAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMVPSLCTYWSHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKEEKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDIQGVEKPENIGNPSKVAGKKQEQVAVAA

Homology

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BLAST of Lsi08G007880 vs. Swiss-Prot
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.0e-62
Identity = 148/281 (52.67%), Postives = 193/281 (68.68%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPY-----IHPLKIAPSILSQNFRTHASISNCLSTKMVPS 128
           MA+ RC + L+R A+ +FS          H ++ + + +S        I N   T+ +P 
Sbjct: 1   MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHG----TVIPNRSLTRNLPW 60

Query: 129 LCTYW-SHTRYLSSDSRNGNEDDDIEEDEDEDEDD-EAYDSSEDDGISVSSRGMLKEYTK 188
              ++ S  R  SS++++ +ED++  E ED+DE++ E ++ S D  +        +EY+ 
Sbjct: 61  YSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDSADMEVE-------REYSP 120

Query: 189 EEKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDV 248
            EK  EA  IGYKV+GPL  S+ +FKPYEPVFA+VQIGSHQFKVSNGDSIFTE+LKFCD+
Sbjct: 121 AEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDI 180

Query: 249 NDKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 308
           NDKL L KVLLLGS+SQTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT+GH
Sbjct: 181 NDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGH 240

Query: 309 RQELTKLRIIDIQGVEKPEN--IGNPSKVAGKKQEQVAVAA 341
           RQELTKLRI DIQG+EKPE   +  PSK A  +Q +  + A
Sbjct: 241 RQELTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

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BLAST of Lsi08G007880 vs. Swiss-Prot
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-25
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 203 KGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGSSSQTIVG 262
           KG   P E +FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLL+G+ + T +G
Sbjct: 114 KGPPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIG 173

Query: 263 RPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDIQGVEKPENI 322
            P V +A V AVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G E     
Sbjct: 174 TPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPAS 233

Query: 323 GNPSKVAGKKQEQVAVAA 341
              ++V  K++ +    A
Sbjct: 234 TLEAEVEAKEEAEAEAEA 251

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BLAST of Lsi08G007880 vs. Swiss-Prot
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.7e-22
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 183 EKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 242
           E E E   I   VV  + +        E +FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 243 DKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 302
           D+++LNKVLL+G+ + T +G+P V +A V AVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 303 QELTKLRIIDIQGVEK 319
           Q  T++RI  I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206

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BLAST of Lsi08G007880 vs. Swiss-Prot
Match: RL21_RICB8 (50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) GN=rplU PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.5e-17
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 212 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGSSSQ-TIVGRPTVPSAV 271
           +FAV++ G  Q+KV     I  E+++  ++  K+ LN+VL++G  S+ + +G P V  AV
Sbjct: 1   MFAVIKAGGKQYKVDQNSVIKVEKIEG-ELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAV 60

Query: 272 VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDI 314
           V A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 61  VTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

[Close]

BLAST of Lsi08G007880 vs. Swiss-Prot
Match: RL21_RICBR (50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) GN=rplU PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.5e-17
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 212 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLLGSSSQ-TIVGRPTVPSAV 271
           +FAV++ G  Q+KV     I  E+++  ++  K+ LN+VL++G  S+ + +G P V  AV
Sbjct: 1   MFAVIKAGGKQYKVDQNSVIKVEKIEG-ELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAV 60

Query: 272 VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDI 314
           V A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 61  VTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

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BLAST of Lsi08G007880 vs. TrEMBL
Match: E5GBZ0_CUCME (50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 5.7e-129
Identity = 250/279 (89.61%), Postives = 259/279 (92.83%), Query Frame = 1


Query: 62  KAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMV 121
           KAIRITTMANRRCLQVLTRHASAI STKPYIH LKIAPS+L +NF THAS+SNCLS K  
Sbjct: 3   KAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTD 62

Query: 122 PSLCTYWSHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTK 181
           PSLCTYWSHTRYLSSDSRNGNEDD   EDEDEDEDDEAYDS EDDGIS SSR M KEYTK
Sbjct: 63  PSLCTYWSHTRYLSSDSRNGNEDD-FTEDEDEDEDDEAYDS-EDDGISTSSRVMKKEYTK 122

Query: 182 EEKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDV 241
           EE EAEAAAIGYKV+GPLDQS+G+FKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDV
Sbjct: 123 EEMEAEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDV 182

Query: 242 NDKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 301
           NDKLILNKVLL+GSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGH
Sbjct: 183 NDKLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 242

Query: 302 RQELTKLRIIDIQGVEKPENIGNPSKVAGKKQEQVAVAA 341
           RQELTKLRI+DIQG+EKPENIG PSKV  KKQEQVAVAA
Sbjct: 243 RQELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of Lsi08G007880 vs. TrEMBL
Match: A0A0A0KFG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G357000 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 4.8e-128
Identity = 249/272 (91.54%), Postives = 255/272 (93.75%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMVPSLCTYW 128
           MANRRCLQVLTRHASAIFSTKPYIHPLK APS LSQNFRTHAS+SNCLS K  PSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 129 SHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKEEKEAEA 188
            HTRYLSSDSRNG+EDD   EDEDEDEDDEAYDS EDDGIS SSR M KEYTKEE EAEA
Sbjct: 61  PHTRYLSSDSRNGSEDD-FTEDEDEDEDDEAYDS-EDDGISTSSRVMKKEYTKEEMEAEA 120

Query: 189 AAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN 248
           AAIGYKV+GPLDQS+GVFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN
Sbjct: 121 AAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN 180

Query: 249 KVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 308
           KVLL+GSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL
Sbjct: 181 KVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 240

Query: 309 RIIDIQGVEKPENIGNPSKVAGKKQEQVAVAA 341
           RI+DIQGVEKPENIG PSKVA KKQEQVAVAA
Sbjct: 241 RIVDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of Lsi08G007880 vs. TrEMBL
Match: I6LNS9_HEVBR (Mitochondrial 50S ribosomal protein L21 OS=Hevea brasiliensis GN=mRPL21 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.5e-78
Identity = 182/280 (65.00%), Postives = 206/280 (73.57%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKP--YIHPLKIAPSILSQNFRTHASI--SNCLSTKMVPSL 128
           MA RRCL  LTR A A+ S+ P    HP K+A S  + N      I  S+ + TK     
Sbjct: 1   MAQRRCLHTLTRQAIALLSSNPTTLYHPCKVAASFPNLNSVKALLICKSSHVFTKADSIW 60

Query: 129 CTYWS--HTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKE 188
           C++W   H RY SSDSR+ +E+DD      EDE+    DS   DG  V    + +EYT E
Sbjct: 61  CSFWPYHHRRYFSSDSRDESENDD------EDEETAGEDS---DGEEVKGSDLKREYTAE 120

Query: 189 EKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 248
           EKE EAAAIGYKVVGPL +S  VFKPYEPVFAVVQIGSHQFKVSNGD IFTE+LKFC+VN
Sbjct: 121 EKEEEAAAIGYKVVGPLQKSDLVFKPYEPVFAVVQIGSHQFKVSNGDCIFTEKLKFCEVN 180

Query: 249 DKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 308
           DKLILNKVLLLGSSSQTIVGRPTVP A V AVVEEHALDAK IIFKKKRRKNYRRTKGHR
Sbjct: 181 DKLILNKVLLLGSSSQTIVGRPTVPDAAVHAVVEEHALDAKAIIFKKKRRKNYRRTKGHR 240

Query: 309 QELTKLRIIDIQGVEKPENIGNPS-KVAG-KKQEQVAVAA 341
           QELTKLRI DIQG+EKPE   +P  K++G K+QE++AVAA
Sbjct: 241 QELTKLRITDIQGIEKPEMKVDPKPKMSGVKQQEKIAVAA 271

[Close]

BLAST of Lsi08G007880 vs. TrEMBL
Match: A0A067JDY3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21444 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 7.3e-76
Identity = 177/279 (63.44%), Postives = 207/279 (74.19%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPYI--HPLKIAPSILSQNFRTHASISNCLSTKMVPSLCT 128
           MA RRCL  LTR   A+ S+ P    H LK +PSI +          + + TK   + C+
Sbjct: 1   MAQRRCLHSLTRQTVALLSSNPTTLHHSLKASPSIPNSISIKSLIFRSSIFTKADITWCS 60

Query: 129 YWSH--TRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKEEK 188
            WSH   R+ +S SR+  E DD EEDE+ + +D   + SE +  + S+  +  EY+ +EK
Sbjct: 61  LWSHHHRRHFASSSRD--ESDDNEEDEETEGEDSEGEYSEGEEPTGSALNI--EYSAQEK 120

Query: 189 EAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK 248
           E EAAAIGYKV+GPLD+S  +FKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK
Sbjct: 121 EEEAAAIGYKVIGPLDKSDQLFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK 180

Query: 249 LILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQE 308
           LILNKVLLLGSS+QTI+GRP VP A V AVVE+HALDAKVIIFKKKRRKNYRRTKGHRQE
Sbjct: 181 LILNKVLLLGSSTQTIIGRPMVPDAAVHAVVEQHALDAKVIIFKKKRRKNYRRTKGHRQE 240

Query: 309 LTKLRIIDIQGVEKPE-NIGNP--SKVAGKKQEQVAVAA 341
           LTKLRI DIQG+EKPE  I +P   K A KKQE+VAVAA
Sbjct: 241 LTKLRITDIQGIEKPERKIDSPKSKKAAAKKQEKVAVAA 275

[Close]

BLAST of Lsi08G007880 vs. TrEMBL
Match: A0A151UAR2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_020515 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73
Identity = 172/272 (63.24%), Postives = 197/272 (72.43%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMVPSLCTYW 128
           MA+RRCL+ LT+    +F +   +  L + P          A  S+ L  K   +    W
Sbjct: 1   MASRRCLRALTKTTPFLFRSSSSLRSLTVPPF-------PRAKASSPLFAKPASAFAR-W 60

Query: 129 SHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKEEKEAEA 188
            H RY SSD R+ +EDD+ EED D+DE++   D  + D    +SRG  K YT EEKEAEA
Sbjct: 61  PHPRYFSSDKRS-DEDDNSEEDYDDDEEE---DYEDGDDYVAASRGK-KVYTAEEKEAEA 120

Query: 189 AAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN 248
           A IGY+VVGPL +   VFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFC+VNDKLILN
Sbjct: 121 ADIGYRVVGPLQKDDDVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILN 180

Query: 249 KVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 308
           KVLLLGS+SQTIVGRP VP A V AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL
Sbjct: 181 KVLLLGSASQTIVGRPIVPDASVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 240

Query: 309 RIIDIQGVEKPENI---GNPSKVAGKKQEQVA 338
           RI DIQG+EKP+N      PSK   K+QE+VA
Sbjct: 241 RITDIQGIEKPQNAIKPEKPSKSTKKEQEKVA 259

[Close]

BLAST of Lsi08G007880 vs. TAIR10
Match: AT4G30930.1 (AT4G30930.1 Ribosomal protein L21)

HSP 1 Score: 241.9 bits (616), Expect = 5.8e-64
Identity = 148/281 (52.67%), Postives = 193/281 (68.68%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPY-----IHPLKIAPSILSQNFRTHASISNCLSTKMVPS 128
           MA+ RC + L+R A+ +FS          H ++ + + +S        I N   T+ +P 
Sbjct: 1   MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHG----TVIPNRSLTRNLPW 60

Query: 129 LCTYW-SHTRYLSSDSRNGNEDDDIEEDEDEDEDD-EAYDSSEDDGISVSSRGMLKEYTK 188
              ++ S  R  SS++++ +ED++  E ED+DE++ E ++ S D  +        +EY+ 
Sbjct: 61  YSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDSADMEVE-------REYSP 120

Query: 189 EEKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDV 248
            EK  EA  IGYKV+GPL  S+ +FKPYEPVFA+VQIGSHQFKVSNGDSIFTE+LKFCD+
Sbjct: 121 AEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDI 180

Query: 249 NDKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 308
           NDKL L KVLLLGS+SQTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT+GH
Sbjct: 181 NDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGH 240

Query: 309 RQELTKLRIIDIQGVEKPEN--IGNPSKVAGKKQEQVAVAA 341
           RQELTKLRI DIQG+EKPE   +  PSK A  +Q +  + A
Sbjct: 241 RQELTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of Lsi08G007880 vs. TAIR10
Match: AT1G35680.1 (AT1G35680.1 Ribosomal protein L21)

HSP 1 Score: 106.3 bits (264), Expect = 3.8e-23
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 183 EKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 242
           E E E   I   VV  + +        E +FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 243 DKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 302
           D+++LNKVLL+G+ + T +G+P V +A V AVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 303 QELTKLRIIDIQGVEK 319
           Q  T++RI  I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206

[Close]

BLAST of Lsi08G007880 vs. NCBI nr
Match: gi|659129777|ref|XP_008464840.1| (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo])

HSP 1 Score: 468.8 bits (1205), Expect = 8.2e-129
Identity = 250/279 (89.61%), Postives = 259/279 (92.83%), Query Frame = 1


Query: 62  KAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMV 121
           KAIRITTMANRRCLQVLTRHASAI STKPYIH LKIAPS+L +NF THAS+SNCLS K  
Sbjct: 3   KAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTD 62

Query: 122 PSLCTYWSHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTK 181
           PSLCTYWSHTRYLSSDSRNGNEDD   EDEDEDEDDEAYDS EDDGIS SSR M KEYTK
Sbjct: 63  PSLCTYWSHTRYLSSDSRNGNEDD-FTEDEDEDEDDEAYDS-EDDGISTSSRVMKKEYTK 122

Query: 182 EEKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDV 241
           EE EAEAAAIGYKV+GPLDQS+G+FKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDV
Sbjct: 123 EEMEAEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDV 182

Query: 242 NDKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 301
           NDKLILNKVLL+GSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGH
Sbjct: 183 NDKLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGH 242

Query: 302 RQELTKLRIIDIQGVEKPENIGNPSKVAGKKQEQVAVAA 341
           RQELTKLRI+DIQG+EKPENIG PSKV  KKQEQVAVAA
Sbjct: 243 RQELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of Lsi08G007880 vs. NCBI nr
Match: gi|449452985|ref|XP_004144239.1| (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus])

HSP 1 Score: 465.7 bits (1197), Expect = 7.0e-128
Identity = 249/272 (91.54%), Postives = 255/272 (93.75%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMVPSLCTYW 128
           MANRRCLQVLTRHASAIFSTKPYIHPLK APS LSQNFRTHAS+SNCLS K  PSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 129 SHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKEEKEAEA 188
            HTRYLSSDSRNG+EDD   EDEDEDEDDEAYDS EDDGIS SSR M KEYTKEE EAEA
Sbjct: 61  PHTRYLSSDSRNGSEDD-FTEDEDEDEDDEAYDS-EDDGISTSSRVMKKEYTKEEMEAEA 120

Query: 189 AAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN 248
           AAIGYKV+GPLDQS+GVFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN
Sbjct: 121 AAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN 180

Query: 249 KVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 308
           KVLL+GSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL
Sbjct: 181 KVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 240

Query: 309 RIIDIQGVEKPENIGNPSKVAGKKQEQVAVAA 341
           RI+DIQGVEKPENIG PSKVA KKQEQVAVAA
Sbjct: 241 RIVDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of Lsi08G007880 vs. NCBI nr
Match: gi|645237207|ref|XP_008225099.1| (PREDICTED: 50S ribosomal protein L21, mitochondrial [Prunus mume])

HSP 1 Score: 313.5 bits (802), Expect = 4.4e-82
Identity = 182/281 (64.77%), Postives = 213/281 (75.80%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPYIHPLKIAPSI-LSQNFRTHASISNCLSTKMVPSLCTY 128
           MANRR LQVL+RHASA+FST      L+  P++ + Q  +T  S    + T   P+    
Sbjct: 3   MANRRRLQVLSRHASALFSTNTTFQSLQTPPALPIYQPLKTLTSKFPLIFTNPDPN---- 62

Query: 129 WSHTRYLSS--------DSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEY 188
           WS TR+ SS        D+ +  E++D ++D+D D+DDEA   SED+  SVS  G  +EY
Sbjct: 63  WSQTRHFSSSRVGDVNEDNEHSEEEEDDDDDDDYDDDDEAVGDSEDE--SVSGCGSKREY 122

Query: 189 TKEEKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFC 248
           T EEKEAEAAAIGY+V+GPL +S  VFKPYEPVFAVVQIGSHQFKVSNGD IFTERLKFC
Sbjct: 123 TAEEKEAEAAAIGYQVIGPLQKSDRVFKPYEPVFAVVQIGSHQFKVSNGDCIFTERLKFC 182

Query: 249 DVNDKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTK 308
           +VNDKLILNKVLLLGSSSQTI+GRP +P A V AVVEEHALDAKVIIFKKKRRKNYRRTK
Sbjct: 183 EVNDKLILNKVLLLGSSSQTIIGRPLLPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTK 242

Query: 309 GHRQELTKLRIIDIQGVEKPENIGNPSKVAGKKQEQVAVAA 341
           GHRQELTKLRI+D+QG+EKP+    P K  GKK E+VAVAA
Sbjct: 243 GHRQELTKLRIVDVQGIEKPDVPEKPPKAPGKKPEKVAVAA 277

[Close]

BLAST of Lsi08G007880 vs. NCBI nr
Match: gi|470115673|ref|XP_004294019.1| (PREDICTED: 50S ribosomal protein L21, mitochondrial [Fragaria vesca subsp. vesca])

HSP 1 Score: 309.3 bits (791), Expect = 8.3e-81
Identity = 173/274 (63.14%), Postives = 206/274 (75.18%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKPYIHPLKIAPSILSQNFRTHASISNCLSTKMVPSLCTYW 128
           MANRRCLQ+LTR  SA+FS  P +H L   P +      TH  +   +S   +     + 
Sbjct: 1   MANRRCLQLLTRRVSALFSANPPLHTLSTPPPL-----STHEPLKALVSKSPLIFSPNWS 60

Query: 129 SHTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKEEKEAEA 188
           + TR+ SSD  +G +D + ++D+D+++DD  Y  S DDG      G  +EYT EE  AEA
Sbjct: 61  APTRHFSSDRNDGVDDSEDDDDDDDEDDDIGY--SSDDGSLSKGGGSKREYTPEEMAAEA 120

Query: 189 AAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN 248
           A IGYKVVGPL+ + GVFKPYEPVFAV+QIGSHQFKVSNGDSIFTERLKFC+VNDKLILN
Sbjct: 121 AGIGYKVVGPLETTDGVFKPYEPVFAVIQIGSHQFKVSNGDSIFTERLKFCEVNDKLILN 180

Query: 249 KVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 308
           KVLL+G+SSQT++GRP VP A V AVVEEHALDAKV+IFKKKRRKNYRRTKGHRQELTKL
Sbjct: 181 KVLLVGTSSQTMIGRPIVPDATVHAVVEEHALDAKVLIFKKKRRKNYRRTKGHRQELTKL 240

Query: 309 RIIDIQGVEKPENI--GNPSKVAGKKQEQVAVAA 341
           RIIDIQG++KPE +    PSK  GKK E+VAVAA
Sbjct: 241 RIIDIQGIQKPEPVVTEKPSKTHGKKPEKVAVAA 267

[Close]

BLAST of Lsi08G007880 vs. NCBI nr
Match: gi|313585316|gb|ADR70863.1| (mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis])

HSP 1 Score: 300.1 bits (767), Expect = 5.1e-78
Identity = 182/280 (65.00%), Postives = 206/280 (73.57%), Query Frame = 1


Query: 69  MANRRCLQVLTRHASAIFSTKP--YIHPLKIAPSILSQNFRTHASI--SNCLSTKMVPSL 128
           MA RRCL  LTR A A+ S+ P    HP K+A S  + N      I  S+ + TK     
Sbjct: 1   MAQRRCLHTLTRQAIALLSSNPTTLYHPCKVAASFPNLNSVKALLICKSSHVFTKADSIW 60

Query: 129 CTYWS--HTRYLSSDSRNGNEDDDIEEDEDEDEDDEAYDSSEDDGISVSSRGMLKEYTKE 188
           C++W   H RY SSDSR+ +E+DD      EDE+    DS   DG  V    + +EYT E
Sbjct: 61  CSFWPYHHRRYFSSDSRDESENDD------EDEETAGEDS---DGEEVKGSDLKREYTAE 120

Query: 189 EKEAEAAAIGYKVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 248
           EKE EAAAIGYKVVGPL +S  VFKPYEPVFAVVQIGSHQFKVSNGD IFTE+LKFC+VN
Sbjct: 121 EKEEEAAAIGYKVVGPLQKSDLVFKPYEPVFAVVQIGSHQFKVSNGDCIFTEKLKFCEVN 180

Query: 249 DKLILNKVLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 308
           DKLILNKVLLLGSSSQTIVGRPTVP A V AVVEEHALDAK IIFKKKRRKNYRRTKGHR
Sbjct: 181 DKLILNKVLLLGSSSQTIVGRPTVPDAAVHAVVEEHALDAKAIIFKKKRRKNYRRTKGHR 240

Query: 309 QELTKLRIIDIQGVEKPENIGNPS-KVAG-KKQEQVAVAA 341
           QELTKLRI DIQG+EKPE   +P  K++G K+QE++AVAA
Sbjct: 241 QELTKLRITDIQGIEKPEMKVDPKPKMSGVKQQEKIAVAA 271

The following BLAST results are available for this feature:

BLAST of Lsi08G007880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM21_ARATH	1.0e-62	52.67	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 ...	[more]
RK21_SPIOL	1.3e-25	47.83	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1	[more]
RK21_ARATH	6.7e-22	41.91	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 S...	[more]
RL21_RICB8	6.5e-17	46.60	50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) GN=rplU PE=3 ...	[more]
RL21_RICBR	6.5e-17	46.60	50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) GN=rplU PE=3 SV...	[more]

BLAST of Lsi08G007880 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBZ0_CUCME	5.7e-129	89.61	50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KFG2_CUCSA	4.8e-128	91.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G357000 PE=3 SV=1	[more]
I6LNS9_HEVBR	3.5e-78	65.00	Mitochondrial 50S ribosomal protein L21 OS=Hevea brasiliensis GN=mRPL21 PE=2 SV=...	[more]
A0A067JDY3_JATCU	7.3e-76	63.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21444 PE=3 SV=1	[more]
A0A151UAR2_CAJCA	1.5e-73	63.24	Uncharacterized protein OS=Cajanus cajan GN=KK1_020515 PE=3 SV=1	[more]

BLAST of Lsi08G007880 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30930.1	5.8e-64	52.67	Ribosomal protein L21	[more]
AT1G35680.1	3.8e-23	41.91	Ribosomal protein L21	[more]

BLAST of Lsi08G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129777\|ref\|XP_008464840.1\|	8.2e-129	89.61	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo]	[more]
gi\|449452985\|ref\|XP_004144239.1\|	7.0e-128	91.54	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus]	[more]
gi\|645237207\|ref\|XP_008225099.1\|	4.4e-82	64.77	PREDICTED: 50S ribosomal protein L21, mitochondrial [Prunus mume]	[more]
gi\|470115673\|ref\|XP_004294019.1\|	8.3e-81	63.14	PREDICTED: 50S ribosomal protein L21, mitochondrial [Fragaria vesca subsp. vesca...	[more]
gi\|313585316\|gb\|ADR70863.1\|	5.1e-78	65.00	mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018258	Ribosomal_L21_CS
IPR001787	Ribosomal_L21

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048229	gametophyte development
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009555	pollen development
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0009567	double fertilization forming a zygote and endosperm
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0006996	organelle organization
biological_process	GO:0043412	macromolecule modification
biological_process	GO:0009553	embryo sac development
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G007880.1	Lsi08G007880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 212..315 score: 22
IPR001787	Ribosomal protein L21	TIGRFAMs	TIGR00061	TIGR00061	coord: 213..313 score: 6.1
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 284..306 scor
None	No IPR available	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 85..335 score: 1.5E
None	No IPR available	PANTHER	PTHR21349:SF0	39S RIBOSOMAL PROTEIN L21, MITOCHONDRIAL	coord: 85..335 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G007880	Csa6G357000	Cucumber (Chinese Long) v2	culsiB470
Lsi08G007880	CSPI06G18620	Wild cucumber (PI 183967)	cpilsiB478
Lsi08G007880	Cucsa.077520	Cucumber (Gy14) v1	cgylsiB078
Lsi08G007880	CmaCh05G009780	Cucurbita maxima (Rimu)	cmalsiB738
Lsi08G007880	CmoCh05G009970	Cucurbita moschata (Rifu)	cmolsiB729
Lsi08G007880	Cla021933	Watermelon (97103) v1	lsiwmB465
Lsi08G007880	MELO3C026533	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G007880	ClCG08G009370	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G007880	MELO3C026533.2	Melon (DHL92) v3.6.1	lsimedB490
Lsi08G007880	Cla97C08G152190	Watermelon (97103) v2	lsiwmbB444
Lsi08G007880	Cp4.1LG11g07940	Cucurbita pepo (Zucchini)	cpelsiB099
Lsi08G007880	CsGy6G018090	Cucumber (Gy14) v2	cgyblsiB437
Lsi08G007880	Carg21880	Silver-seed gourd	carlsiB188
Lsi08G007880	CsaV3_6G031500	Cucumber (Chinese Long) v3	cuclsiB500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G007880	Cucurbita maxima (Rimu)	cmalsiB190
Lsi08G007880	Cucurbita maxima (Rimu)	cmalsiB461
Lsi08G007880	Cucurbita moschata (Rifu)	cmolsiB180
Lsi08G007880	Cucurbita moschata (Rifu)	cmolsiB446
Lsi08G007880	Cucurbita pepo (Zucchini)	cpelsiB692
Lsi08G007880	Wild cucumber (PI 183967)	cpilsiB320
Lsi08G007880	Melon (DHL92) v3.5.1	lsimeB487
Lsi08G007880	Cucumber (Gy14) v2	cgyblsiB292
Lsi08G007880	Melon (DHL92) v3.6.1	lsimedB506
Lsi08G007880	Silver-seed gourd	carlsiB120
Lsi08G007880	Silver-seed gourd	carlsiB318
Lsi08G007880	Silver-seed gourd	carlsiB326