CsGy6G018090.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G018090.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein l21 mitochondrial
Location	Chr6 : 18889843 .. 18894321 (-)
Sequence length	1837

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAGTTTTCGTATGAACTATTTATGAAAATTTTATCTAAATATACATTAAACTCTTAACTTTCTCTTACCAATAGAGACTAAGATGGTATGATTTGACTATATAATACGAATCACATTTAAACACAATTATTGGGGTAAATTAGAGAGGGCAGCTCGAAAAGACAAGTTTCCGTTTTATATTTTCAAAACTATTGTTGCTTTTACTCTTTGATTTTTCTAAACCCTACTTCATTTCACGCCGGCCACCCCCTCCACCCCCTCTCTCCCTCCATCTCACTGTCACCCACTGCACGCCCGACGTGATCTCACCGTCTACCGTCGCACGCTTCACTCTCAGCTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGGTTATCTCTGTTTTTCTTTTCTAGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGGTTTTGATTTTTCTTCTATCTTTTCATTTTGTTTCGTTCATTATGTTGTTTAATATGTCCACCCACAAAGAAGTAGAGCAAAAGATGTATGGTTTTTATTTTACTCTTTTGTTGATTTCTTATTCAGTCAATGTGTAACCAATCCAAATGAAAACATAAAAACGACAATGTATGCTTCGCATATTAGGAAAACAGTACGAACTTACTTGAACAGAACTCTAGAATTCTAGAGGTTGCACAACTGTCTTTTGAGTTCTAAAGATTAAGAAAATAGTAAATTGAATCAATAAATAATGAATGACAAATGAAAAGAGCGTATTATTCTTATCCGAATAACTAAATAAAATGGAACAGAAAAGTTCAATAAACTTATAAAGCACAAAAGAAAACTGGCCTTCATAATCAGGTACAATAAACTTGTTCAATAAGCTGTCTTGAAAATATTTTTTCTCTTACAAAAGAACAGCAAAATACCATGGAAAAACAGATAGACACACACAAAAAGGATCCACCAGAACAACGAATGGGTAAACCTGGAGTTTGCTTGAGTGTTGAAATAATTATTGATGCATATGAACTGGTGTAGGTTGGGGCAAATAGAAATTGGGGCAAATAGAAATAAAGGATCTCCTTTATGGTAAATAGAAGCATTAGTTTTTTCAAAATGTGAAATCCTCCAAATTTGGACCTATTTGGAATATAATTTTTTTTTTTTAATTTTTAAAAACAGGATTTCAAATCTCAACAAATTCAAAATTCTTCTCTTCCGTTTCTTTTCCATCCAAACATGTCGATCAAATTCAGGGGTTCCCAACATGTGTTTATGTTTTTATTTTCTTTCTGCTGATTAAGAAGTTTGGAATATTGTGGCAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGGTTAAAACCTGTGGCATGTCTTAACGAGTTTTATGAATTAGTAGTTGGACAGTTATCCACTCTTTTCTTTTGGTTACTCTTGTAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGGTTTGCAACTCCTGTTCCATTCTTCTTTGTCAATGCGTTACATATAGTATAGTTTATCCGTTTTTATTAGACTTGCTAGCTTTTGGCCATTTTTCTACACGGTCTCCTGCTTCCACTCTTTTGATATGAGCCATCCAACCAGATTAGTAATGCTATATCTATTAATTTTTTCATAGGTACTTGTAGAGAAAAAGGATTTAGTTACAGTTTTTCTCATAAGTTATTCCGAACACAATATTTCACATGGGAGCAATTTCGGAACCTAGAACTGAATTGTACTCATTTTTTTTCTCTACATTCTGCTGTTGTTTCCAGGTTGCAATTTGGAAAGTTAAAATTTGTGCTATGCTATGTTTTTTTTATTGGTAGGATTCGACTTAAACATTAATTTGACAGACTGTAAGGCAATCTGTAGATGAATAAGTATTGAGGAGCTCCTTTGTTTTCTTGACAGTGTGACAAAACATAGTGGAGCTCCTAAAAAGCAATTGTTTTTTGTACTTGAGAAGTTGCACTTTTCAAATTGTCACAGATGAGGCTAAAATATGTGGTGATGTAAATTCGTCAGACTAACTAAAATACGTGTAAAATATATTATCGTTTGGTAGCTTTTATTCAAGTGCTTATTGTTAGTTGCACATGAGATCATAAGGGGATCTTTTCTGACATTTATATTACCCTTTTGCCTTGTCAGTCTTGAATGCCGTCTGTTGATTTTCTCATGTTTGCTTTTATATCTTGCCTACTTGATTTTGATGATTTGTGTTGAACTTCTGTACTGATATCGACTAAAATTCTTCTATGTATTTCATCCCGAGCAAGCTTGAATGATTATTCTTTTATGGATTTATCTTTTGCAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGTAAGAGTGACAGCTAAACTATTTACTCGTTTTTTGTTGCTAATGCAATATATTGTAAGAATAAATTTTTGCTGGCGTGTATTCTCTTGGACTGTTACTATACATTTTCAATTTTCTACCTCTTTGTGCGATTTAGAATCATTTTAGTAACCATAACGATCTAATTGCCAACTTGAGCACCACCTAATTAGGTAAGGTATAGCTCTCAGCCAAAATATCAGAGGTTTAAATTCCTATCCGCACATGTTGAACTTAGAATAGGAATGCCAGTTTGTTAGCAAAATTTATCTACTTTCACATATCCAGGCATTAAGTTGGATGAAAATACTAGAATCTGGAAACTTAACACTGTTTGGAAGATGCCTAGAAGACATGTTCTTCTAATAATTGTTTCTTAAAAGGATTATGGAATTACGTGTTCTACTTAACGCTAATTCTGCAGTATTAAGTGTAATATATTTGTTTCTTAGTGATTTATTTGCTACAATATCATCATAACAACTTTGTTGTCCTGTCTGTGGTTGGTTTACTAATGTAAATCTTTCTTTGGTTGTGCTTTTTTATTTTTTTTCCTCTTAATTTCTTTTTGTTTCCAAATCCTGGAAGTCGTTCTCAAATTCGTGTTCAAATTCTAACTTGAATGATTTTTCCTCCTCTTCAAAAGGCATTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCAGAACCAAAGGACATCGCCAGGTATATCTAGACTATCCAAAAAGATCAGAAGAGTTGCTTATTCAAGTTGTCTGATGACCTCTTTCTACTATGTTTTCTATCTCAGGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAAGTAGAAGGTTCCATGATTCTTACTAGCTAGAAGTGCTAAGTTGGATCTCCTAATTCCTTAGAAGCGAGTCCTTTACTCCCAACTAGGCTAAGGCCACTTTGCTAGGATTCCCATGTCTCTTCTTTATTTTCCTGGCAGTTTTCCCCAAAAATGCGATGCTTCTATTTGAATAAATGGAATTTTCTCATAAGAATTATGATCATACATTTGAGAAGAGTTTGGAATTGTACGGACTAGGATTTGTGCCATATATCATATATGTATGGTAGATATTGAGTTTCTTGATTTGTTGGGTGGTTACAGGATCATACATTATATATTTTCTTTTATTTTTTATATCTGCACATGGATCTCAAAATTTAATCAGTTTGTAGCTTTTCTGTTTTATTATTTATTATTTTTTAAAGGATTGGCTTTTAGCCTTAAGCTGCTCTCCAAGTAAATCTCTTATTTAGAAGATGAATTTAGGGTTTAGGGGCTTGAAATTTTAATTGCATTTCTTTTTTCATTTTTAATTTAATAAATTAAAATTTTGAAAAGATATTATTATTGCT

mRNA sequence

AAAATAGTTTTCGTATGAACTATTTATGAAAATTTTATCTAAATATACATTAAACTCTTAACTTTCTCTTACCAATAGAGACTAAGATGGTATGATTTGACTATATAATACGAATCACATTTAAACACAATTATTGGGGTAAATTAGAGAGGGCAGCTCGAAAAGACAAGTTTCCGTTTTATATTTTCAAAACTATTGTTGCTTTTACTCTTTGATTTTTCTAAACCCTACTTCATTTCACGCCGGCCACCCCCTCCACCCCCTCTCTCCCTCCATCTCACTGTCACCCACTGCACGCCCGACGTGATCTCACCGTCTACCGTCGCACGCTTCACTCTCAGCTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGGTTATCTCTGTTTTTCTTTTCTAGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAAGTAGAAGGTTCCATGATTCTTACTAGCTAGAAGTGCTAAGTTGGATCTCCTAATTCCTTAGAAGCGAGTCCTTTACTCCCAACTAGGCTAAGGCCACTTTGCTAGGATTCCCATGTCTCTTCTTTATTTTCCTGGCAGTTTTCCCCAAAAATGCGATGCTTCTATTTGAATAAATGGAATTTTCTCATAAGAATTATGATCATACATTTGAGAAGAGTTTGGAATTGTACGGACTAGGATTTGTGCCATATATCATATATGTATGGTAGATATTGAGTTTCTTGATTTGTTGGGTGGTTACAGGATCATACATTATATATTTTCTTTTATTTTTTATATCTGCACATGGATCTCAAAATTTAATCAGTTTGTAGCTTTTCTGTTTTATTATTTATTATTTTTTAAAGGATTGGCTTTTAGCCTTAAGCTGCTCTCCAAGTAAATCTCTTATTTAGAAGATGAATTTAGGGTTTAGGGGCTTGAAATTTTAATTGCATTTCTTTTTTCATTTTTAATTTAATAAATTAAAATTTTGAAAAGATATTATTATTGCT

Coding sequence (CDS)

ATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAA

Protein sequence

MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA

Homology

[Close]

BLAST of CsGy6G018090.1 vs. NCBI nr
Match: XP_004144239.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >XP_011657340.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >KGN47534.1 hypothetical protein Csa_6G357000 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 2.2e-111
Identity = 244/270 (90.37%), Postives = 244/270 (90.37%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
           PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQGVEKPENIGKPSKVA KKQEQVAVAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of CsGy6G018090.1 vs. NCBI nr
Match: XP_008464840.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >ADN33989.1 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo])

HSP 1 Score: 387.5 bits (994), Expect = 3.4e-104
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTDPSLCTYW
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTRYLSSDSRNG+EXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSA VQAVVEEH                         ELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CsGy6G018090.1 vs. NCBI nr
Match: XP_023545372.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545373.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545374.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023545375.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.7 bits (857), Expect = 2.6e-88
Identity = 205/270 (75.93%), Postives = 219/270 (81.11%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIH LK APSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX S  SR M+KEYTKEE EAEAAA
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPSRGMQKEYTKEEKEAEAAA 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           +DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CsGy6G018090.1 vs. NCBI nr
Match: XP_022999749.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999750.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999751.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999752.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 202/270 (74.81%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIH LK +PSFLSQNFRTH S+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKISPSFLSQNFRTHVSVPNCLFAKLDPSLCTNW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXX    SR M+KEYTKEE EAEAA+
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSRGMQKEYTKEEKEAEAAS 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S GVFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           +DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CsGy6G018090.1 vs. NCBI nr
Match: XP_022946851.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946852.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946853.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946854.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 203/270 (75.19%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHA AIFSTKPYIH LK  PSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHALAIFSTKPYIHSLKIVPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            H+RYLSSDS     XXXXXXXXXXXXXXXXXXXXXXIS  SR M+KEYTKEE EAEAA+
Sbjct: 61  SHSRYLSSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXISVPSRGMQKEYTKEEKEAEAAS 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LL+GSS QTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           +DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CsGy6G018090.1 vs. TAIR10
Match: AT4G30930.1 (Ribosomal protein L21)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-42
Identity = 95/164 (57.93%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 109 YTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 168
           Y+  E   EA  IGYKV+GPL  SE +FKPYEP FA+VQIGSHQFKVSNGDSIFTE+LKF
Sbjct: 107 YSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKF 166

Query: 169 CDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------- 228
           CD+NDKL L KVLL+GS+SQTI+GRP +P A V AVVEEH                    
Sbjct: 167 CDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRT 226

Query: 229 -----ELTKLRIVDIQGVEKPEN--IGKPSKVAGKKQEQVAVAA 246
                ELTKLRI DIQG+EKPE   + KPSK A  +Q +  + A
Sbjct: 227 RGHRQELTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of CsGy6G018090.1 vs. TAIR10
Match: AT1G35680.1 (Ribosomal protein L21)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 113 EMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 172
           E E E   I   V+  + +        E  FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 173 DKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHELTKLRIV 217
           D+++LNKVLLVG+ + T +G+P V +A V AVVE   L    +V
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVV 174

[Close]

BLAST of CsGy6G018090.1 vs. Swiss-Prot
Match: sp|Q8L9A0|RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-41
Identity = 95/164 (57.93%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 109 YTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 168
           Y+  E   EA  IGYKV+GPL  SE +FKPYEP FA+VQIGSHQFKVSNGDSIFTE+LKF
Sbjct: 107 YSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKF 166

Query: 169 CDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------- 228
           CD+NDKL L KVLL+GS+SQTI+GRP +P A V AVVEEH                    
Sbjct: 167 CDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRT 226

Query: 229 -----ELTKLRIVDIQGVEKPEN--IGKPSKVAGKKQEQVAVAA 246
                ELTKLRI DIQG+EKPE   + KPSK A  +Q +  + A
Sbjct: 227 RGHRQELTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of CsGy6G018090.1 vs. Swiss-Prot
Match: sp|P24613|RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-12
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 143 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQ 202
           FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLLVG+ + T +G P V +A V 
Sbjct: 124 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 183

Query: 203 AVVEEHELTKLRIV 217
           AVVEE  L    IV
Sbjct: 184 AVVEEQLLDDKVIV 197

[Close]

BLAST of CsGy6G018090.1 vs. Swiss-Prot
Match: sp|P51412|RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-11
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 113 EMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 172
           E E E   I   V+  + +        E  FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 173 DKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHELTKLRIV 217
           D+++LNKVLLVG+ + T +G+P V +A V AVVE   L    +V
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVV 174

[Close]

BLAST of CsGy6G018090.1 vs. Swiss-Prot
Match: sp|Q54IF0|RM21_DICDI (Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=mrpl21 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 132 SEGVFKPY-EPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTI 191
           S+  F P  + +FAVV I   Q+KV  GD I T++++  DV + ++L+KVLLVG+ ++TI
Sbjct: 50  SKNQFTPIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETI 109

Query: 192 VGRPTVPSAVVQAVVEEHELTK 213
           +G+P + +  V A +EE   T+
Sbjct: 110 IGKPIISNFKVHAYIEEQAKTE 130

[Close]

BLAST of CsGy6G018090.1 vs. Swiss-Prot
Match: sp|B8E0B4|RL21_DICTD (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) OX=515635 GN=rplU PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 143 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSA-VV 202
           F VV+ G  Q+KVS G  +  E+LK  +V D+++L+KVLLVG   + I+G+P V  A V+
Sbjct: 2   FVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVI 61

Query: 203 QAVVEEHELTKL 214
             VV + +  K+
Sbjct: 62  AKVVRQDKYPKV 72

[Close]

BLAST of CsGy6G018090.1 vs. TrEMBL
Match: tr|A0A0A0KFG2|A0A0A0KFG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.4e-111
Identity = 244/270 (90.37%), Postives = 244/270 (90.37%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
           PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSAVVQAVVEEH                         ELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQGVEKPENIGKPSKVA KKQEQVAVAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of CsGy6G018090.1 vs. TrEMBL
Match: tr|A0A1S3CMX4|A0A1S3CMX4_CUCME (50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-104
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTDPSLCTYW
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTRYLSSDSRNG+EXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSA VQAVVEEH                         ELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CsGy6G018090.1 vs. TrEMBL
Match: tr|E5GBZ0|E5GBZ0_CUCME (50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-104
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTDPSLCTYW
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTRYLSSDSRNG+EXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 70  SHTRYLSSDSRNGNEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 129

Query: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180
           IGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 130 IGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 189

Query: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLRI 240
           LLVGSSSQTIVGRPTVPSA VQAVVEEH                         ELTKLRI
Sbjct: 190 LLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 249

Query: 241 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 246
           VDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 250 VDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CsGy6G018090.1 vs. TrEMBL
Match: tr|A0A2P6Q464|A0A2P6Q464_ROSCH (Putative ribosomal protein L21 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0008411 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 165/273 (60.44%), Postives = 186/273 (68.13%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60
           MANRRCLQ+LTR  SA+FS  P  H L T P  LS    TH  L +       P L    
Sbjct: 1   MANRRCLQLLTRRVSALFSANPPFHTLSTPPPPLS----THQPLISNSPLVFTPHLSA-- 60

Query: 61  PHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAAA 120
            HTR+ SSD      XXXXXXXXXXXXXXXXXXX    +  S   K+EYT EEMEAEAA 
Sbjct: 61  -HTRHFSSDRXXXXXXXXXXXXXXXXXXXXXXXXSLSKNGGS---KREYTAEEMEAEAAG 120

Query: 121 IGYKVLGPLDQS-EGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180
           IGYKV+GPL+++ +GVFKPYEP FAV+QIGSHQFKVSNGDSIFTERLKFC+VNDKLILNK
Sbjct: 121 IGYKVVGPLEKTDDGVFKPYEPVFAVIQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNK 180

Query: 181 VLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLR 240
           VLLVG+SSQT++GRP VP A V AVVEEH                         ELTKLR
Sbjct: 181 VLLVGTSSQTMIGRPIVPDAAVHAVVEEHALDAKVLIFKKKRRKNYRRTKGHRQELTKLR 240

Query: 241 IVDIQGVEKPENI--GKPSKVAGKKQEQVAVAA 246
           I+DIQG++KPE +   KPSK  GKK E+VAVAA
Sbjct: 241 IIDIQGIQKPEPVVTEKPSKAPGKKPEKVAVAA 263

[Close]

BLAST of CsGy6G018090.1 vs. TrEMBL
Match: tr|A0A2P5FQP4|A0A2P5FQP4_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_041910 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.4e-58
Identity = 159/273 (58.24%), Postives = 187/273 (68.50%), Query Frame = 0


Query: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKT-APSFLSQNFRTHASLSNCLSAKTDPSLCTY 60
           MANRRCL  LTRHASA+FS  P +H L T  P    Q+ +T A+    LS     +    
Sbjct: 1   MANRRCLHTLTRHASALFSKNPSLHSLTTPLPLPTEQSLKTIATKFAFLSTNPGSAWHDQ 60

Query: 61  WPHTRYLSSDSRNGSEXXXXXXXXXXXXXXXXXXXXXXISTSSRVMKKEYTKEEMEAEAA 120
           W  +R+ SS++ +G +XXXXXXXXXXXXXXXXXXXX  ++      K+EY+ EE EAEAA
Sbjct: 61  WSQSRHFSSNAGDG-DXXXXXXXXXXXXXXXXXXXXEGVALPRAASKREYSPEEREAEAA 120

Query: 121 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180
           AIGYKV+GPL++S+ VFKPYEP FAV++IGSHQFKVSNGD IFTERLKFCDVNDKLILNK
Sbjct: 121 AIGYKVVGPLEKSDRVFKPYEPVFAVIEIGSHQFKVSNGDCIFTERLKFCDVNDKLILNK 180

Query: 181 VLLVGSSSQTIVGRPTVPSAVVQAVVEEH-------------------------ELTKLR 240
           VLL+GSSSQTI+GRP VP A V AVVEEH                         EL+KLR
Sbjct: 181 VLLLGSSSQTIIGRPIVPDATVHAVVEEHALDAKVLIFKKKRRKNYRRTKGHRQELSKLR 240

Query: 241 IVDIQGVEKPENIGKPS--KVAGKKQEQVAVAA 246
           I DIQG+EKP  + K    K   KKQE+VAVAA
Sbjct: 241 ITDIQGIEKPVTVDKQKTPKTPDKKQEKVAVAA 272

The following BLAST results are available for this feature:

BLAST of CsGy6G018090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144239.1	2.2e-111	90.37	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis sativus] >XP_011657...	[more]
XP_008464840.1	3.4e-104	85.56	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841...	[more]
XP_023545372.1	2.6e-88	75.93	50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022999749.1	1.7e-87	74.81	50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_022999750.1...	[more]
XP_022946851.1	2.2e-87	75.19	50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022946852...	[more]

BLAST of CsGy6G018090.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30930.1	1.5e-42	57.93	Ribosomal protein L21	[more]
AT1G35680.1	2.2e-12	37.50	Ribosomal protein L21	[more]

BLAST of CsGy6G018090.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9A0\|RM21_ARATH	2.8e-41	57.93	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|P24613\|RK21_SPIOL	6.0e-12	55.41	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P...	[more]
sp\|P51412\|RK21_ARATH	3.9e-11	37.50	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|Q54IF0\|RM21_DICDI	6.2e-09	40.24	Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum OX...	[more]
sp\|B8E0B4\|RL21_DICTD	2.2e-06	41.67	50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) OX...	[more]

BLAST of CsGy6G018090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFG2\|A0A0A0KFG2_CUCSA	1.4e-111	90.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1	[more]
tr\|A0A1S3CMX4\|A0A1S3CMX4_CUCME	2.2e-104	85.56	50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620...	[more]
tr\|E5GBZ0\|E5GBZ0_CUCME	2.2e-104	85.56	50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
tr\|A0A2P6Q464\|A0A2P6Q464_ROSCH	1.9e-58	60.44	Putative ribosomal protein L21 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g00084...	[more]
tr\|A0A2P5FQP4\|A0A2P5FQP4_9ROSA	5.4e-58	58.24	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_041910 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR036164	L21-like_sf
IPR001787	Ribosomal_L21
IPR028909	L21p-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0009567	double fertilization forming a zygote and endosperm
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0009555	pollen development
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G018090	CsGy6G018090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G018090.1	CsGy6G018090.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G018090.1.five_prime_UTR.2	CsGy6G018090.1.five_prime_UTR.2	five_prime_UTR
CsGy6G018090.1.five_prime_UTR.1	CsGy6G018090.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G018090.1.exon.5	CsGy6G018090.1.exon.5	exon
CsGy6G018090.1.exon.4	CsGy6G018090.1.exon.4	exon
CsGy6G018090.1.exon.3	CsGy6G018090.1.exon.3	exon
CsGy6G018090.1.exon.2	CsGy6G018090.1.exon.2	exon
CsGy6G018090.1.exon.1	CsGy6G018090.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G018090.1.CDS.4	CsGy6G018090.1.CDS.4	CDS
CsGy6G018090.1.CDS.3	CsGy6G018090.1.CDS.3	CDS
CsGy6G018090.1.CDS.2	CsGy6G018090.1.CDS.2	CDS
CsGy6G018090.1.CDS.1	CsGy6G018090.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G018090.1.three_prime_UTR.1	CsGy6G018090.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028909	Ribosomal protein L21-like	PFAM	PF00829	Ribosomal_L21p	coord: 143..214 e-value: 8.5E-16 score: 58.0
IPR028909	Ribosomal protein L21-like	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 68..216
IPR001787	Ribosomal protein L21	TIGRFAM	TIGR00061	TIGR00061	coord: 143..212 e-value: 1.6E-12 score: 45.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..105
None	No IPR available	PANTHER	PTHR21349:SF0	39S RIBOSOMAL PROTEIN L21, MITOCHONDRIAL	coord: 68..216
IPR036164	L21-like superfamily	SUPERFAMILY	SSF141091	L21p-like	coord: 143..215