CsGy6G014800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G014800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein RALF-like 4
Location	Chr6 : 12953548 .. 12953898 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

mRNA sequence

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Coding sequence (CDS)

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Protein sequence

MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD

Homology

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BLAST of CsGy6G014800 vs. NCBI nr
Match: XP_004150814.1 (PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.5e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800 vs. NCBI nr
Match: XP_016902249.1 (PREDICTED: protein RALF-like 4 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 5.6e-57
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKL LCLLLLVAA A TLPVALCDWTRA+GNP+YAFWG + PATINDVDDSRRLLFQYGF
Sbjct: 1   MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWGNSAPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCR RGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800 vs. NCBI nr
Match: XP_008441015.1 (PREDICTED: protein RALF-like 19 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALC-DWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A   DWT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]

BLAST of CsGy6G014800 vs. NCBI nr
Match: XP_004148669.1 (PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical protein Csa_6G484570 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of CsGy6G014800 vs. NCBI nr
Match: XP_022989011.1 (protein RALF-like 4 [Cucurbita maxima])

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYG------NPDYAFWGTAEPATINDVDDSRRL 60
           MK+ L LLL+ A +A   P++      ++G      N +Y+F+G          +DSRR 
Sbjct: 4   MKICLFLLLVFALVA---PLSFAFHETSHGSSLVDDNSEYSFFGGGSSEAEAMTEDSRRQ 63

Query: 61  LFQYGFAY-KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 117
           LF+YGFAY +  + ++L Y AL KNN PC  RGHSYYDC KRR+ NPYRRGC AITGCAR
Sbjct: 64  LFEYGFAYNREARKRFLTYYALSKNNIPCGRRGHSYYDCKKRRRINPYRRGCAAITGCAR 123

[Close]

BLAST of CsGy6G014800 vs. TAIR10
Match: AT1G28270.1 (ralf-like 4)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of CsGy6G014800 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 73.6 bits (179), Expect = 9.3e-14
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDW--TRAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   W  T++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL--- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -----AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of CsGy6G014800 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of CsGy6G014800 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-11
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]

BLAST of CsGy6G014800 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 64.3 bits (155), Expect = 5.6e-11
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]

BLAST of CsGy6G014800 vs. Swiss-Prot
Match: sp|Q9FZA0|RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-14
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of CsGy6G014800 vs. Swiss-Prot
Match: sp|Q6NME6|RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDW--TRAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   W  T++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL--- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -----AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of CsGy6G014800 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of CsGy6G014800 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]

BLAST of CsGy6G014800 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]

BLAST of CsGy6G014800 vs. TrEMBL
Match: tr|A0A0A0KCD7|A0A0A0KCD7_CUCSA (F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.0e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800 vs. TrEMBL
Match: tr|A0A1S4E1Z3|A0A1S4E1Z3_CUCME (protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKL LCLLLLVAA A TLPVALCDWTRA+GNP+YAFWG + PATINDVDDSRRLLFQYGF
Sbjct: 1   MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWGNSAPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCR RGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800 vs. TrEMBL
Match: tr|A0A1S3B2H7|A0A1S3B2H7_CUCME (protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALC-DWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A   DWT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]

BLAST of CsGy6G014800 vs. TrEMBL
Match: tr|A0A0A0KHU4|A0A0A0KHU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of CsGy6G014800 vs. TrEMBL
Match: tr|A0A078FS15|A0A078FS15_BRANA (BnaA07g08550D protein OS=Brassica napus OX=3708 GN=BnaA07g08550D PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.5e-13
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L   LL+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIFGLLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C RF +
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRFLE 111

The following BLAST results are available for this feature:

BLAST of CsGy6G014800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150814.1	1.5e-62	100.00	PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cuc...	[more]
XP_016902249.1	5.6e-57	92.24	PREDICTED: protein RALF-like 4 [Cucumis melo]	[more]
XP_008441015.1	3.8e-37	73.50	PREDICTED: protein RALF-like 19 [Cucumis melo]	[more]
XP_004148669.1	4.1e-36	73.04	PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical prote...	[more]
XP_022989011.1	7.6e-22	50.41	protein RALF-like 4 [Cucurbita maxima]	[more]

BLAST of CsGy6G014800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28270.1	4.9e-15	41.96	ralf-like 4	[more]
AT2G33775.1	9.3e-14	38.46	ralf-like 19	[more]
AT3G16570.1	6.6e-12	38.54	rapid alkalinization factor 23	[more]
AT4G15800.1	4.3e-11	45.33	ralf-like 33	[more]
AT3G05490.1	5.6e-11	47.76	ralf-like 22	[more]

BLAST of CsGy6G014800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FZA0\|RLF4_ARATH	8.9e-14	41.96	Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1	[more]
sp\|Q6NME6\|RLF19_ARATH	1.7e-12	38.46	Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	1.2e-10	38.54	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
sp\|Q8L9P8\|RLF33_ARATH	7.8e-10	45.33	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	1.0e-09	47.76	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of CsGy6G014800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCD7\|A0A0A0KCD7_CUCSA	1.0e-62	100.00	F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1	[more]
tr\|A0A1S4E1Z3\|A0A1S4E1Z3_CUCME	3.7e-57	92.24	protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1	[more]
tr\|A0A1S3B2H7\|A0A1S3B2H7_CUCME	2.5e-37	73.50	protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1	[more]
tr\|A0A0A0KHU4\|A0A0A0KHU4_CUCSA	2.7e-36	73.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1	[more]
tr\|A0A078FS15\|A0A078FS15_BRANA	9.5e-13	42.24	BnaA07g08550D protein OS=Brassica napus OX=3708 GN=BnaA07g08550D PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G014800.1	CsGy6G014800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 52..113 e-value: 6.0E-19 score: 68.6
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 2..115
None	No IPR available	PANTHER	PTHR33136:SF16	PROTEIN RALF-LIKE 19-RELATED	coord: 2..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G014800	Cla009326	Watermelon (97103) v1	cgybwmB506
CsGy6G014800	Csa6G199790	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G014800	MELO3C021354	Melon (DHL92) v3.5.1	cgybmeB386
CsGy6G014800	ClCG06G005350	Watermelon (Charleston Gray)	cgybwcgB440
CsGy6G014800	CSPI06G14920	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G014800	Lsi09G014030	Bottle gourd (USVL1VR-Ls)	cgyblsiB368
CsGy6G014800	MELO3C021354.2	Melon (DHL92) v3.6.1	cgybmedB387
CsGy6G014800	CsaV3_6G017390	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G014800	Cla97C06G114850	Watermelon (97103) v2	cgybwmbB448
CsGy6G014800	Bhi12G001856	Wax gourd	cgybwgoB514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G014800	Cucurbita maxima (Rimu)	cgybcmaB733
CsGy6G014800	Cucurbita maxima (Rimu)	cgybcmaB857
CsGy6G014800	Cucurbita moschata (Rifu)	cgybcmoB840
CsGy6G014800	Cucurbita pepo (Zucchini)	cgybcpeB833
CsGy6G014800	Cucurbita pepo (Zucchini)	cgybcpeB885