CsaV3_6G017390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G017390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRapid ALkalinization Factor
Locationchr6 : 12908080 .. 12908781 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGAAGCGGTAGACCAAACACTTCACAGCCCTAATCTTCACAAACCCCAGTTCCCTCTCCCATTTATAATCCCCTCTCCTCTCCATTTCTATTAGGAAACAAAGACGCAGAGCCTAAAACTTTTATTTTAAAAAAAAAACACACAAAAACAAAATCTATAATTGCTATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAAGTTTTTAAAATGATCCATTAATGGAAAATTATATATTTTTATAATTTAACGGAATTTATTTTTAGTTTTATTTACTTTATGATCAAATCTTGATGTTGGGAATAAATTCTGTTATTTGCTTGTTTATATTTCTTACTGTATTCCTTGATTGTAATGTGTGCTTTTCTTGTATGTATGCTTTTAT

mRNA sequence

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Coding sequence (CDS)

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Protein sequence

MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Homology
[Close]
BLAST of CsaV3_6G017390 vs. NCBI nr
Match: XP_004150814.1 (PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 8.9e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]
BLAST of CsaV3_6G017390 vs. NCBI nr
Match: XP_016902249.1 (PREDICTED: protein RALF-like 4 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 3.3e-57
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKL LCLLLLVAA A TLPVALCDWTRA+GNP+YAFWG + PATINDVDDSRRLLFQYGF
Sbjct: 1   MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWGNSAPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCR RGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]
BLAST of CsaV3_6G017390 vs. NCBI nr
Match: XP_008441015.1 (PREDICTED: protein RALF-like 19 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 2.2e-37
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALC-DWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A   DWT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]
BLAST of CsaV3_6G017390 vs. NCBI nr
Match: XP_004148669.1 (PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical protein Csa_6G484570 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]
BLAST of CsaV3_6G017390 vs. NCBI nr
Match: XP_022989011.1 (protein RALF-like 4 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 4.5e-22
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYG------NPDYAFWGTAEPATINDVDDSRRL 60
           MK+ L LLL+ A +A   P++      ++G      N +Y+F+G          +DSRR 
Sbjct: 4   MKICLFLLLVFALVA---PLSFAFHETSHGSSLVDDNSEYSFFGGGSSEAEAMTEDSRRQ 63

Query: 61  LFQYGFAY-KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 117
           LF+YGFAY +  + ++L Y AL KNN PC  RGHSYYDC KRR+ NPYRRGC AITGCAR
Sbjct: 64  LFEYGFAYNREARKRFLTYYALSKNNIPCGRRGHSYYDCKKRRRINPYRRGCAAITGCAR 123

[Close]
BLAST of CsaV3_6G017390 vs. TAIR10
Match: AT1G28270.1 (ralf-like 4)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0 

Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]
BLAST of CsaV3_6G017390 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 74.3 bits (181), Expect = 5.5e-14
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDW--TRAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   W  T++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL--- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -----AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]
BLAST of CsaV3_6G017390 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-12
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0 

Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]
BLAST of CsaV3_6G017390 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]
BLAST of CsaV3_6G017390 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]
BLAST of CsaV3_6G017390 vs. Swiss-Prot
Match: sp|Q9FZA0|RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-14
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0 

Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]
BLAST of CsaV3_6G017390 vs. Swiss-Prot
Match: sp|Q6NME6|RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.9e-13
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDW--TRAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   W  T++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL--- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -----AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]
BLAST of CsaV3_6G017390 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.2e-11
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0 

Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]
BLAST of CsaV3_6G017390 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-10
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]
BLAST of CsaV3_6G017390 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-10
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]
BLAST of CsaV3_6G017390 vs. TrEMBL
Match: tr|A0A0A0KCD7|A0A0A0KCD7_CUCSA (F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.9e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]
BLAST of CsaV3_6G017390 vs. TrEMBL
Match: tr|A0A1S4E1Z3|A0A1S4E1Z3_CUCME (protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKL LCLLLLVAA A TLPVALCDWTRA+GNP+YAFWG + PATINDVDDSRRLLFQYGF
Sbjct: 1   MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWGNSAPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCR RGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]
BLAST of CsaV3_6G017390 vs. TrEMBL
Match: tr|A0A1S3B2H7|A0A1S3B2H7_CUCME (protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-37
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALC-DWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A   DWT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]
BLAST of CsaV3_6G017390 vs. TrEMBL
Match: tr|A0A0A0KHU4|A0A0A0KHU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]
BLAST of CsaV3_6G017390 vs. TrEMBL
Match: tr|A0A078FS15|A0A078FS15_BRANA (BnaA07g08550D protein OS=Brassica napus OX=3708 GN=BnaA07g08550D PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 0 

Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L   LL+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIFGLLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C RF +
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRFLE 111

The following BLAST results are available for this feature:
BLAST of CsaV3_6G017390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150814.18.9e-63100.00PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cuc... [more]
XP_016902249.13.3e-5792.24PREDICTED: protein RALF-like 4 [Cucumis melo][more]
XP_008441015.12.2e-3773.50PREDICTED: protein RALF-like 19 [Cucumis melo][more]
XP_004148669.12.5e-3673.04PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical prote... [more]
XP_022989011.14.5e-2250.41protein RALF-like 4 [Cucurbita maxima][more]
BLAST of CsaV3_6G017390 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G28270.12.9e-1541.96ralf-like 4[more]
AT2G33775.15.5e-1438.46ralf-like 19[more]
AT3G16570.15.1e-1238.54rapid alkalinization factor 23[more]
AT4G15800.12.5e-1145.33ralf-like 33[more]
AT3G05490.13.3e-1147.76ralf-like 22[more]
BLAST of CsaV3_6G017390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FZA0|RLF4_ARATH5.2e-1441.96Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1[more]
sp|Q6NME6|RLF19_ARATH9.9e-1338.46Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1[more]
sp|Q9LUS7|RLF23_ARATH9.2e-1138.54Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV... [more]
sp|Q8L9P8|RLF33_ARATH4.6e-1045.33Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1[more]
sp|Q9MA62|RLF22_ARATH6.0e-1047.76Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1[more]
BLAST of CsaV3_6G017390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCD7|A0A0A0KCD7_CUCSA5.9e-63100.00F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1[more]
tr|A0A1S4E1Z3|A0A1S4E1Z3_CUCME2.2e-5792.24protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1[more]
tr|A0A1S3B2H7|A0A1S3B2H7_CUCME1.5e-3773.50protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1[more]
tr|A0A0A0KHU4|A0A0A0KHU4_CUCSA1.6e-3673.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1[more]
tr|A0A078FS15|A0A078FS15_BRANA5.6e-1342.24BnaA07g08550D protein OS=Brassica napus OX=3708 GN=BnaA07g08550D PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009987 cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G017390.1CsaV3_6G017390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 52..113
e-value: 6.0E-19
score: 68.6
NoneNo IPR availablePANTHERPTHR33136FAMILY NOT NAMEDcoord: 2..115
NoneNo IPR availablePANTHERPTHR33136:SF16PROTEIN RALF-LIKE 19-RELATEDcoord: 2..115

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G017390CSPI06G14920Wild cucumber (PI 183967)cpicucB364
CsaV3_6G017390Cucsa.172090Cucumber (Gy14) v1cgycucB275
CsaV3_6G017390CsGy6G014800Cucumber (Gy14) v2cgybcucB298
CsaV3_6G017390Cla009326Watermelon (97103) v1cucwmB566
CsaV3_6G017390MELO3C021354Melon (DHL92) v3.5.1cucmeB450
CsaV3_6G017390ClCG06G005350Watermelon (Charleston Gray)cucwcgB499
CsaV3_6G017390Lsi09G014030Bottle gourd (USVL1VR-Ls)cuclsiB426
CsaV3_6G017390MELO3C021354.2Melon (DHL92) v3.6.1cucmedB441
CsaV3_6G017390Cla97C06G114850Watermelon (97103) v2cucwmbB489
CsaV3_6G017390Bhi12G001856Wax gourdcucwgoB554
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G017390Silver-seed gourdcarcucB0088
CsaV3_6G017390Cucumber (Gy14) v2cgybcucB153
CsaV3_6G017390Cucumber (Gy14) v1cgycucB397
CsaV3_6G017390Cucurbita maxima (Rimu)cmacucB0453
CsaV3_6G017390Cucurbita maxima (Rimu)cmacucB0999
CsaV3_6G017390Cucurbita moschata (Rifu)cmocucB0306
CsaV3_6G017390Cucurbita moschata (Rifu)cmocucB0446
CsaV3_6G017390Cucurbita moschata (Rifu)cmocucB0986
CsaV3_6G017390Cucurbita pepo (Zucchini)cpecucB0177
CsaV3_6G017390Cucurbita pepo (Zucchini)cpecucB0783
CsaV3_6G017390Cucurbita pepo (Zucchini)cpecucB1073
CsaV3_6G017390Wild cucumber (PI 183967)cpicucB188
CsaV3_6G017390Bottle gourd (USVL1VR-Ls)cuclsiB494
CsaV3_6G017390Melon (DHL92) v3.5.1cucmeB510
CsaV3_6G017390Melon (DHL92) v3.6.1cucmedB498
CsaV3_6G017390Watermelon (97103) v1cucwmB523
CsaV3_6G017390Watermelon (97103) v2cucwmbB485
CsaV3_6G017390Wax gourdcucwgoB577
CsaV3_6G017390Cucumber (Chinese Long) v3cuccucB150