Cucsa.172090 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.172090
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Rapid alkalinization factor 1
Location	scaffold01196 : 17447 .. 17797 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

mRNA sequence

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Coding sequence (CDS)

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Protein sequence

MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD*

Homology

[Close]

BLAST of Cucsa.172090 vs. Swiss-Prot
Match: RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 1


Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of Cucsa.172090 vs. Swiss-Prot
Match: RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-14
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWT--RAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   WT  ++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAA- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -------RRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of Cucsa.172090 vs. Swiss-Prot
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-11
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 1


Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of Cucsa.172090 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]

BLAST of Cucsa.172090 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]

BLAST of Cucsa.172090 vs. TrEMBL
Match: A0A0A0KCD7_CUCSA (F3H9.8 protein OS=Cucumis sativus GN=Csa_6G199790 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of Cucsa.172090 vs. TrEMBL
Match: A0A0A0KHU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484570 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.7e-38
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 5   LCL-LLLVAAIAITLPVALCD-WTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL D WTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of Cucsa.172090 vs. TrEMBL
Match: A0A078FS15_BRANA (BnaA07g08550D protein OS=Brassica napus GN=BnaA07g08550D PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L   LL+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIFGLLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C RF +
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRFLE 111

[Close]

BLAST of Cucsa.172090 vs. TrEMBL
Match: A0A0D3D6A7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L +  L+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIVGFLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 109

[Close]

BLAST of Cucsa.172090 vs. TrEMBL
Match: A0A078E5A8_BRANA (BnaC07g10600D protein OS=Brassica napus GN=BnaC07g10600D PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L +  L+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIVGFLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 109

[Close]

BLAST of Cucsa.172090 vs. TAIR10
Match: AT1G28270.1 (AT1G28270.1 ralf-like 4)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-16
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 1


Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of Cucsa.172090 vs. TAIR10
Match: AT2G33775.1 (AT2G33775.1 ralf-like 19)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-15
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWT--RAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   WT  ++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAA- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -------RRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of Cucsa.172090 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-12
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 1


Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of Cucsa.172090 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]

BLAST of Cucsa.172090 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]

BLAST of Cucsa.172090 vs. NCBI nr
Match: gi|449466199|ref|XP_004150814.1| (PREDICTED: protein RALF-like 4 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 3.2e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of Cucsa.172090 vs. NCBI nr
Match: gi|659080853|ref|XP_008441015.1| (PREDICTED: protein RALF-like 19 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 6.0e-39
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCD-WTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A  D WT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]

BLAST of Cucsa.172090 vs. NCBI nr
Match: gi|449461879|ref|XP_004148669.1| (PREDICTED: protein RALF-like 19 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 6.7e-38
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 5   LCL-LLLVAAIAITLPVALCD-WTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL D WTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of Cucsa.172090 vs. NCBI nr
Match: gi|674917517|emb|CDY15684.1| (BnaA07g08550D [Brassica napus])

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L   LL+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIFGLLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C RF +
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRFLE 111

[Close]

BLAST of Cucsa.172090 vs. NCBI nr
Match: gi|685329751|ref|XP_009102923.1| (PREDICTED: protein RALF-like 4 [Brassica rapa])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 48/114 (42.11%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L   LL+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIFGLLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 109

The following BLAST results are available for this feature:

BLAST of Cucsa.172090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF4_ARATH	6.1e-15	41.96	Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1	[more]
RLF19_ARATH	6.7e-14	38.46	Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1	[more]
RLF23_ARATH	9.1e-11	38.54	Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1	[more]
RLF22_ARATH	2.6e-10	47.76	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]
RLF33_ARATH	4.5e-10	45.33	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]

BLAST of Cucsa.172090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCD7_CUCSA	2.2e-64	100.00	F3H9.8 protein OS=Cucumis sativus GN=Csa_6G199790 PE=4 SV=1	[more]
A0A0A0KHU4_CUCSA	4.7e-38	73.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484570 PE=4 SV=1	[more]
A0A078FS15_BRANA	2.8e-14	42.24	BnaA07g08550D protein OS=Brassica napus GN=BnaA07g08550D PE=4 SV=1	[more]
A0A0D3D6A7_BRAOL	1.8e-13	41.23	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078E5A8_BRANA	1.8e-13	41.23	BnaC07g10600D protein OS=Brassica napus GN=BnaC07g10600D PE=4 SV=1	[more]

BLAST of Cucsa.172090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28270.1	3.4e-16	41.96	ralf-like 4	[more]
AT2G33775.1	3.8e-15	38.46	ralf-like 19	[more]
AT3G16570.1	5.1e-12	38.54	rapid alkalinization factor 23	[more]
AT3G05490.1	1.5e-11	47.76	ralf-like 22	[more]
AT4G15800.1	2.5e-11	45.33	ralf-like 33	[more]

BLAST of Cucsa.172090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466199\|ref\|XP_004150814.1\|	3.2e-64	100.00	PREDICTED: protein RALF-like 4 [Cucumis sativus]	[more]
gi\|659080853\|ref\|XP_008441015.1\|	6.0e-39	73.50	PREDICTED: protein RALF-like 19 [Cucumis melo]	[more]
gi\|449461879\|ref\|XP_004148669.1\|	6.7e-38	73.04	PREDICTED: protein RALF-like 19 [Cucumis sativus]	[more]
gi\|674917517\|emb\|CDY15684.1\|	3.9e-14	42.24	BnaA07g08550D [Brassica napus]	[more]
gi\|685329751\|ref\|XP_009102923.1\|	1.1e-13	42.11	PREDICTED: protein RALF-like 4 [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.172090.1	Cucsa.172090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 52..113 score: 5.9
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 67..115 score: 8.0
None	No IPR available	PANTHER	PTHR33136:SF9	PROTEIN RALF-LIKE 4	coord: 67..115 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.172090	Cla009326	Watermelon (97103) v1	cgywmB329
Cucsa.172090	Csa6G199790	Cucumber (Chinese Long) v2	cgycuB262
Cucsa.172090	MELO3C021354	Melon (DHL92) v3.5.1	cgymeB305
Cucsa.172090	ClCG06G005350	Watermelon (Charleston Gray)	cgywcgB307
Cucsa.172090	CSPI06G14920	Wild cucumber (PI 183967)	cgycpiB270
Cucsa.172090	Lsi09G014030	Bottle gourd (USVL1VR-Ls)	cgylsiB285
Cucsa.172090	MELO3C021354.2	Melon (DHL92) v3.6.1	cgymedB297
Cucsa.172090	CsaV3_6G017390	Cucumber (Chinese Long) v3	cgycucB275
Cucsa.172090	Cla97C06G114850	Watermelon (97103) v2	cgywmbB312
Cucsa.172090	Bhi12G001856	Wax gourd	cgywgoB352

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.172090	Cucumber (Chinese Long) v2	cgycuB261
Cucsa.172090	Melon (DHL92) v3.5.1	cgymeB307
Cucsa.172090	Watermelon (97103) v1	cgywmB327
Cucsa.172090	Cucurbita pepo (Zucchini)	cgycpeB0472
Cucsa.172090	Bottle gourd (USVL1VR-Ls)	cgylsiB287
Cucsa.172090	Melon (DHL92) v3.6.1	cgymedB299
Cucsa.172090	Silver-seed gourd	carcgyB0079
Cucsa.172090	Cucumber (Chinese Long) v3	cgycucB274
Cucsa.172090	Watermelon (97103) v2	cgywmbB311
Cucsa.172090	Wax gourd	cgywgoB353
Cucsa.172090	Cucumber (Gy14) v1	cgycgyB108
Cucsa.172090	Cucurbita maxima (Rimu)	cgycmaB0485
Cucsa.172090	Cucurbita maxima (Rimu)	cgycmaB0488
Cucsa.172090	Cucurbita moschata (Rifu)	cgycmoB0488
Cucsa.172090	Wild cucumber (PI 183967)	cgycpiB269