CsGy6G014800.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G014800.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein RALF-like 4
Location	Chr6 : 12953548 .. 12953898 (+)
Sequence length	351

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

mRNA sequence

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Coding sequence (CDS)

ATGAAGCTCGGTCTCTGTCTCCTCCTACTCGTAGCTGCCATCGCCATCACTCTTCCTGTTGCCTTATGTGATTGGACTCGTGCCTATGGTAACCCCGACTACGCCTTTTGGGGCACGGCTGAACCGGCGACGATAAATGATGTTGATGACAGCAGACGACTACTTTTCCAATATGGATTTGCTTACAAATATCCAAAGAATAAGTATTTGGGTTATGATGCACTTAGGAAGAACAACTCCCCTTGCCGTCATCGTGGACACTCTTATTATGACTGTACGAAGCGCCGAAAGGCCAACCCTTATCGTCGTGGGTGCATCGCTATCACTGGTTGTGCTCGATTCACGGATTAA

Protein sequence

MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD

Homology

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BLAST of CsGy6G014800.1 vs. NCBI nr
Match: XP_004150814.1 (PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.5e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800.1 vs. NCBI nr
Match: XP_016902249.1 (PREDICTED: protein RALF-like 4 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 5.6e-57
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKL LCLLLLVAA A TLPVALCDWTRA+GNP+YAFWG + PATINDVDDSRRLLFQYGF
Sbjct: 1   MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWGNSAPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCR RGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800.1 vs. NCBI nr
Match: XP_008441015.1 (PREDICTED: protein RALF-like 19 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALC-DWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A   DWT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]

BLAST of CsGy6G014800.1 vs. NCBI nr
Match: XP_004148669.1 (PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical protein Csa_6G484570 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of CsGy6G014800.1 vs. NCBI nr
Match: XP_022989011.1 (protein RALF-like 4 [Cucurbita maxima])

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYG------NPDYAFWGTAEPATINDVDDSRRL 60
           MK+ L LLL+ A +A   P++      ++G      N +Y+F+G          +DSRR 
Sbjct: 4   MKICLFLLLVFALVA---PLSFAFHETSHGSSLVDDNSEYSFFGGGSSEAEAMTEDSRRQ 63

Query: 61  LFQYGFAY-KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 117
           LF+YGFAY +  + ++L Y AL KNN PC  RGHSYYDC KRR+ NPYRRGC AITGCAR
Sbjct: 64  LFEYGFAYNREARKRFLTYYALSKNNIPCGRRGHSYYDCKKRRRINPYRRGCAAITGCAR 123

[Close]

BLAST of CsGy6G014800.1 vs. TAIR10
Match: AT1G28270.1 (ralf-like 4)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of CsGy6G014800.1 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 73.6 bits (179), Expect = 9.3e-14
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDW--TRAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   W  T++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL--- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -----AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of CsGy6G014800.1 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of CsGy6G014800.1 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-11
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]

BLAST of CsGy6G014800.1 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 64.3 bits (155), Expect = 5.6e-11
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]

BLAST of CsGy6G014800.1 vs. Swiss-Prot
Match: sp|Q9FZA0|RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-14
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 4   GLCLLLLVA-AIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGFAY 63
           GL +L +VA ++  T P+     T++  N         E  ++ D + +RR L +     
Sbjct: 10  GLLILAMVAKSVNATYPL-----TKSCINGQGCIGEDDELESLMDSETNRRQLAR----- 69

Query: 64  KYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 115
                +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C R+
Sbjct: 70  ---GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of CsGy6G014800.1 vs. Swiss-Prot
Match: sp|Q6NME6|RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDW--TRAYGNPDYAFWGTAEPATINDVDDSRRLLFQY 60
           M + + L+L +  +A+    A   W  T++  N         E   + D + +RR L   
Sbjct: 1   MGIKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL--- 60

Query: 61  GFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFT 116
                  +  Y+ Y ALRKNN PC  RG SYYDC KR++ANPYRRGC  IT C R T
Sbjct: 61  -----AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of CsGy6G014800.1 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 20  VALCDWTRAYGNPDYAFWGTAEPATINDVDD--SRRLLFQYGFAYKYPKNKYLGYDALRK 79
           +A C  + A G+    F+G  E     ++D   +RR+L            +Y+ Y ALR+
Sbjct: 51  IAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRIL---------ATRRYISYGALRR 110

Query: 80  NNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCAR 114
           N  PC  RG SYY+C +  +ANPY RGC AIT C R
Sbjct: 111 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of CsGy6G014800.1 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 39  TAEPATINDVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKA 98
           TAE     D + +RR+L            KY+ Y ALR+N  PC  RG SYY+C +  +A
Sbjct: 51  TAEEEFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 110

Query: 99  NPYRRGCIAITGCAR 114
           NPY RGC AIT C R
Sbjct: 111 NPYSRGCSAITRCRR 116

[Close]

BLAST of CsGy6G014800.1 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 47  DVDDSRRLLFQYGFAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCI 106
           D D SRR+L Q          KY+ Y A+R+N+ PC  RG SYY+C +  +ANPY RGC 
Sbjct: 62  DSDISRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCS 119

Query: 107 AITGCAR 114
            IT C R
Sbjct: 122 TITRCRR 119

[Close]

BLAST of CsGy6G014800.1 vs. TrEMBL
Match: tr|A0A0A0KCD7|A0A0A0KCD7_CUCSA (F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.0e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF
Sbjct: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800.1 vs. TrEMBL
Match: tr|A0A1S4E1Z3|A0A1S4E1Z3_CUCME (protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           MKL LCLLLLVAA A TLPVALCDWTRA+GNP+YAFWG + PATINDVDDSRRLLFQYGF
Sbjct: 1   MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWGNSAPATINDVDDSRRLLFQYGF 60

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           AYKYPKNKYLGYDALRKNNSPCR RGHSYYDCTKRRKANPYRRGCIAITGCARFTD
Sbjct: 61  AYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116

[Close]

BLAST of CsGy6G014800.1 vs. TrEMBL
Match: tr|A0A1S3B2H7|A0A1S3B2H7_CUCME (protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALC-DWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYG 60
           MKLGL  LL++A +A  L +A   DWT AY  P+Y F       T N+ +DSRRLLFQYG
Sbjct: 4   MKLGL-FLLVIAVVAAPLCLAFSDDWTHAYAAPNYDF-------TTNN-EDSRRLLFQYG 63

Query: 61  FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           FAYKYPKNKYLGYDALRKNNSPCRHRG SYYDC KRRKANPYRRGCIAITGCARFTD
Sbjct: 64  FAYKYPKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARFTD 111

[Close]

BLAST of CsGy6G014800.1 vs. TrEMBL
Match: tr|A0A0A0KHU4|A0A0A0KHU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65

Query: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCARFTD
Sbjct: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of CsGy6G014800.1 vs. TrEMBL
Match: tr|A0A078FS15|A0A078FS15_BRANA (BnaA07g08550D protein OS=Brassica napus OX=3708 GN=BnaA07g08550D PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.5e-13
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 1   MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWGTAEPATINDVDDSRRLLFQYGF 60
           +KL L   LL+ A+  T   A    T++  N         E  ++ D + +RR L +   
Sbjct: 4   VKLLLIFGLLILAMVATSVNATYPLTKSCINGQGCIGDDDELESLMDSETNRRQLAR--- 63

Query: 61  AYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 117
                  +Y+GYDAL+KNN PC  RG SYYDC KRR+ NPYRRGC AIT C RF +
Sbjct: 64  -----GRRYIGYDALKKNNVPCNRRGRSYYDCKKRRRNNPYRRGCSAITHCYRFLE 111

The following BLAST results are available for this feature:

BLAST of CsGy6G014800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150814.1	1.5e-62	100.00	PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cuc...	[more]
XP_016902249.1	5.6e-57	92.24	PREDICTED: protein RALF-like 4 [Cucumis melo]	[more]
XP_008441015.1	3.8e-37	73.50	PREDICTED: protein RALF-like 19 [Cucumis melo]	[more]
XP_004148669.1	4.1e-36	73.04	PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical prote...	[more]
XP_022989011.1	7.6e-22	50.41	protein RALF-like 4 [Cucurbita maxima]	[more]

BLAST of CsGy6G014800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28270.1	4.9e-15	41.96	ralf-like 4	[more]
AT2G33775.1	9.3e-14	38.46	ralf-like 19	[more]
AT3G16570.1	6.6e-12	38.54	rapid alkalinization factor 23	[more]
AT4G15800.1	4.3e-11	45.33	ralf-like 33	[more]
AT3G05490.1	5.6e-11	47.76	ralf-like 22	[more]

BLAST of CsGy6G014800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FZA0\|RLF4_ARATH	8.9e-14	41.96	Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1	[more]
sp\|Q6NME6\|RLF19_ARATH	1.7e-12	38.46	Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	1.2e-10	38.54	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
sp\|Q8L9P8\|RLF33_ARATH	7.8e-10	45.33	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	1.0e-09	47.76	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of CsGy6G014800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCD7\|A0A0A0KCD7_CUCSA	1.0e-62	100.00	F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1	[more]
tr\|A0A1S4E1Z3\|A0A1S4E1Z3_CUCME	3.7e-57	92.24	protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1	[more]
tr\|A0A1S3B2H7\|A0A1S3B2H7_CUCME	2.5e-37	73.50	protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1	[more]
tr\|A0A0A0KHU4\|A0A0A0KHU4_CUCSA	2.7e-36	73.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1	[more]
tr\|A0A078FS15\|A0A078FS15_BRANA	9.5e-13	42.24	BnaA07g08550D protein OS=Brassica napus OX=3708 GN=BnaA07g08550D PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G014800	CsGy6G014800	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G014800.1.CDS.1	CsGy6G014800.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G014800.1	CsGy6G014800.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 52..113 e-value: 6.0E-19 score: 68.6
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 2..115
None	No IPR available	PANTHER	PTHR33136:SF16	PROTEIN RALF-LIKE 19-RELATED	coord: 2..115