CsGy4G010320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G010320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	fission regulator-like protein
Location	Chr4 : 9066797 .. 9067081 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCAGACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGTGGAGGAGGAGAAGAAGTGA

mRNA sequence

ATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCAGACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGTGGAGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCAGACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGTGGAGGAGGAGAAGAAGTGA

Protein sequence

MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVVEEEKK

Homology

[Close]

BLAST of CsGy4G010320 vs. NCBI nr
Match: XP_008460761.1 (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCGGG 60
          MRA PPNAIKLDGQMQLLPEPPAEPSHSTRHS+QTLLVLLAAITILGVIARVFARLC GG
Sbjct: 1  MRAPPPNAIKLDGQMQLLPEPPAEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSS--PPPSQVVEEEKK 95
          TDD  IEGWVQTRCNSCIDGSS   PPS+V EEEKK
Sbjct: 61 TDD--IEGWVQTRCNSCIDGSSLPAPPSEVAEEEKK 94

[Close]

BLAST of CsGy4G010320 vs. NCBI nr
Match: KGN53853.1 (hypothetical protein Csa_4G166970 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 5.0e-32
Identity = 74/94 (78.72%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCGGG 60
          MRAAPPNAIKLDGQMQLLPEPPAE                   TILGVIARVFARLCGGG
Sbjct: 1  MRAAPPNAIKLDGQMQLLPEPPAEXXXXXXXXXXXXXXXXXXXTILGVIARVFARLCGGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVVEEEKK 95
          TDDDNIEGWVQTRCNSCIDGSSPPPSQV EEEKK
Sbjct: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 94

[Close]

BLAST of CsGy4G010320 vs. NCBI nr
Match: PIN10285.1 (hypothetical protein CDL12_17132 [Handroanthus impetiginosus] >PIN20013.1 hypothetical protein CDL12_07302 [Handroanthus impetiginosus])

HSP 1 Score: 86.7 bits (213), Expect = 4.7e-14
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 17 LLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCG----GGTDDDNIEGWVQT 76
          L+  PP +PSHST HS++TL+V+LAAITI+GVIA V ARLCG    GG+ + ++EGWV+ 
Sbjct: 7  LVEPPPVQPSHSTPHSIETLVVVLAAITIIGVIAGVIARLCGGQHFGGSGEHDVEGWVER 66

Query: 77 RCNSCIDGSSP 84
          +C SCID   P
Sbjct: 67 KCRSCIDAGVP 77

[Close]

BLAST of CsGy4G010320 vs. NCBI nr
Match: XP_010057245.1 (PREDICTED: uncharacterized protein LOC104445124 [Eucalyptus grandis])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 24  EPSHSTRHSLQTLLVLLAAITILGVIARVFARLCG----GGTDDDNIEGWVQTRCNSCID 83
           EP    R S++TL+V+LAAITI+GV+A + ARLCG    GG+ D++IEGWV+ RC SCID
Sbjct: 39  EPGRYARRSIETLVVVLAAITIIGVVAGIVARLCGGRLLGGSRDNDIEGWVERRCRSCID 98

Query: 84  GSSPPPSQ 88
              PPP +
Sbjct: 99  SGLPPPEE 106

[Close]

BLAST of CsGy4G010320 vs. NCBI nr
Match: XP_011020353.1 (PREDICTED: uncharacterized protein LOC105122764 [Populus euphratica])

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-12
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 10 KLDGQMQLLPEPP---AEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCG----GGTD 69
          +L+ Q+  + +PP   A+PS +T HS++TL+V+LA ITI  VIA + ARLCG    GG  
Sbjct: 7  RLNEQLTPVVQPPPAVAKPSGNTNHSIETLVVVLAVITIAAVIAGILARLCGGRHFGGNG 66

Query: 70 DDNIEGWVQTRCNSCIDGSSP 84
          + +IEGWV++RC SCIDG  P
Sbjct: 67 EHDIEGWVESRCRSCIDGGIP 87

[Close]

BLAST of CsGy4G010320 vs. TAIR10
Match: AT3G57500.1 (unknown protein)

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-14
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 10 KLDGQMQLLP-----EPPA--EPSHSTRH-SLQTLLVLLAAITILGVIARVFARLCGG-- 69
          +LD Q+   P     +PP+  +PSH++ H S++TL+V+LA ITIL V+A VFARLCGG  
Sbjct: 7  RLDDQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRH 66

Query: 70 ---GTDDDNIEGWVQTRCNSCIDGSSPPPS 87
             G D D IEGWV+ +C SCID   P  S
Sbjct: 67 LSHGGDHD-IEGWVERKCRSCIDAGIPAVS 95

[Close]

BLAST of CsGy4G010320 vs. TAIR10
Match: AT2G26520.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-05
Identity = 21/59 (35.59%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 26 SHSTRHSLQTLLVLLAAITILGVIARVFARLCGG----GTDDDNIEGWVQTRCNSCIDG 81
          S +   ++   + +   +T+L V+A V  RLC G    G  D ++E W ++RC SCIDG
Sbjct: 24 SSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWAESRCGSCIDG 82

[Close]

BLAST of CsGy4G010320 vs. TrEMBL
Match: tr|A0A1S3CEC8|A0A1S3CEC8_CUCME (uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCGGG 60
          MRA PPNAIKLDGQMQLLPEPPAEPSHSTRHS+QTLLVLLAAITILGVIARVFARLC GG
Sbjct: 1  MRAPPPNAIKLDGQMQLLPEPPAEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSS--PPPSQVVEEEKK 95
          TDD  IEGWVQTRCNSCIDGSS   PPS+V EEEKK
Sbjct: 61 TDD--IEGWVQTRCNSCIDGSSLPAPPSEVAEEEKK 94

[Close]

BLAST of CsGy4G010320 vs. TrEMBL
Match: tr|A0A0A0KWC6|A0A0A0KWC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-32
Identity = 74/94 (78.72%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCGGG 60
          MRAAPPNAIKLDGQMQLLPEPPAE                   TILGVIARVFARLCGGG
Sbjct: 1  MRAAPPNAIKLDGQMQLLPEPPAEXXXXXXXXXXXXXXXXXXXTILGVIARVFARLCGGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVVEEEKK 95
          TDDDNIEGWVQTRCNSCIDGSSPPPSQV EEEKK
Sbjct: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 94

[Close]

BLAST of CsGy4G010320 vs. TrEMBL
Match: tr|A0A2G9HRE4|A0A2G9HRE4_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07302 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 17 LLPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCG----GGTDDDNIEGWVQT 76
          L+  PP +PSHST HS++TL+V+LAAITI+GVIA V ARLCG    GG+ + ++EGWV+ 
Sbjct: 7  LVEPPPVQPSHSTPHSIETLVVVLAAITIIGVIAGVIARLCGGQHFGGSGEHDVEGWVER 66

Query: 77 RCNSCIDGSSP 84
          +C SCID   P
Sbjct: 67 KCRSCIDAGVP 77

[Close]

BLAST of CsGy4G010320 vs. TrEMBL
Match: tr|A0A1U8I0U8|A0A1U8I0U8_GOSHI (uncharacterized protein LOC107889399 OS=Gossypium hirsutum OX=3635 GN=LOC107889399 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 18  LPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCG----GGTDDDNIEGWVQTR 77
           +P    EPS  +  S++TL+V+LAAITI+GVIA + ARLCG    GG  +++IEGW++ +
Sbjct: 15  VPPTVREPSRYSHRSIETLIVVLAAITIIGVIAGIIARLCGGRHFGGNGENDIEGWIENK 74

Query: 78  CNSCIDG----SSPPPSQ----VVEEEKK 95
           C SCIDG    + PPP +      EEEKK
Sbjct: 75  CRSCIDGGVPAAVPPPKEEPKPAREEEKK 103

[Close]

BLAST of CsGy4G010320 vs. TrEMBL
Match: tr|A0A0D2NSG3|A0A0D2NSG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G137500 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 18  LPEPPAEPSHSTRHSLQTLLVLLAAITILGVIARVFARLCG----GGTDDDNIEGWVQTR 77
           +P    EPS  +  S++TL+V+LAAITI+GVIA + ARLCG    GG  +++IEGW++ +
Sbjct: 15  VPPTVREPSRYSHRSIETLIVVLAAITIIGVIAGIIARLCGGRHFGGNGENDIEGWIENK 74

Query: 78  CNSCIDG----SSPPPSQ----VVEEEKK 95
           C SCIDG    + PPP +      EEEKK
Sbjct: 75  CRSCIDGGVPAAVPPPKEEPKPAREEEKK 103

The following BLAST results are available for this feature:

BLAST of CsGy4G010320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460761.1	3.0e-37	89.58	PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo]	[more]
KGN53853.1	5.0e-32	78.72	hypothetical protein Csa_4G166970 [Cucumis sativus]	[more]
PIN10285.1	4.7e-14	57.75	hypothetical protein CDL12_17132 [Handroanthus impetiginosus] >PIN20013.1 hypoth...	[more]
XP_010057245.1	2.0e-12	55.88	PREDICTED: uncharacterized protein LOC104445124 [Eucalyptus grandis]	[more]
XP_011020353.1	5.8e-12	50.62	PREDICTED: uncharacterized protein LOC105122764 [Populus euphratica]	[more]

BLAST of CsGy4G010320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57500.1	5.7e-14	50.00	unknown protein	[more]
AT2G26520.1	4.9e-05	35.59	unknown protein	[more]

BLAST of CsGy4G010320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G010320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEC8\|A0A1S3CEC8_CUCME	2.0e-37	89.58	uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=...	[more]
tr\|A0A0A0KWC6\|A0A0A0KWC6_CUCSA	3.3e-32	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1	[more]
tr\|A0A2G9HRE4\|A0A2G9HRE4_9LAMI	3.1e-14	57.75	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07302 P...	[more]
tr\|A0A1U8I0U8\|A0A1U8I0U8_GOSHI	6.5e-12	48.31	uncharacterized protein LOC107889399 OS=Gossypium hirsutum OX=3635 GN=LOC1078893...	[more]
tr\|A0A0D2NSG3\|A0A0D2NSG3_GOSRA	6.5e-12	48.31	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G137500 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G010320.1	CsGy4G010320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33429:SF2	SUBFAMILY NOT NAMED	coord: 16..93
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 16..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G010320	Cla006118	Watermelon (97103) v1	cgybwmB313
CsGy4G010320	Csa4G166970	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G010320	MELO3C023115	Melon (DHL92) v3.5.1	cgybmeB287
CsGy4G010320	ClCG04G003270	Watermelon (Charleston Gray)	cgybwcgB279
CsGy4G010320	CSPI04G10690	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G010320	Lsi01G018520	Bottle gourd (USVL1VR-Ls)	cgyblsiB245
CsGy4G010320	MELO3C023115.2	Melon (DHL92) v3.6.1	cgybmedB281
CsGy4G010320	CsaV3_4G011800	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G010320	Cla97C04G070430	Watermelon (97103) v2	cgybwmbB280
CsGy4G010320	Bhi03G001930	Wax gourd	cgybwgoB391
CsGy4G010320	Carg22459	Silver-seed gourd	carcgybB0205

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G010320	Cucurbita maxima (Rimu)	cgybcmaB531
CsGy4G010320	Cucurbita maxima (Rimu)	cgybcmaB538
CsGy4G010320	Cucurbita maxima (Rimu)	cgybcmaB571
CsGy4G010320	Cucurbita moschata (Rifu)	cgybcmoB503
CsGy4G010320	Cucurbita moschata (Rifu)	cgybcmoB513
CsGy4G010320	Cucurbita moschata (Rifu)	cgybcmoB546
CsGy4G010320	Cucurbita pepo (Zucchini)	cgybcpeB467
CsGy4G010320	Cucurbita pepo (Zucchini)	cgybcpeB475
CsGy4G010320	Cucurbita pepo (Zucchini)	cgybcpeB524
CsGy4G010320	Watermelon (Charleston Gray)	cgybwcgB284
CsGy4G010320	Watermelon (97103) v1	cgybwmB315
CsGy4G010320	Silver-seed gourd	carcgybB0299
CsGy4G010320	Watermelon (97103) v2	cgybwmbB284
CsGy4G010320	Wax gourd	cgybwgoB376