Carg22459 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22459
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_152 : 303569 .. 303877 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGCAACAGCAGACGGTCAAATGCAGCCGCTGCCGGACCCAACTCCGGCGACGGCGACTGAGCCCTCCCACTCTGGTCAGTCCATCCAGACGCTGGTGGTGGTGCTAGCAGTCATCATAATTTTGGGTGTCATTGCTCGGATCCTGGCTCGATTCTGCGGCGGAAACCATTCCGGCGGCGGTGGTGGTGACGGAGAAAATGACATTGAAGGTTGGGTAGAAAGAACGTGCAGGAGCTGCATTGACGGCGGCGTCGGTACTCCGCCGCCGCCCCCACCGCCGGAAGCGGCGGAGGAGAAGAAGTGA

mRNA sequence

ATGTGGGCAACAGCAGACGGTCAAATGCAGCCGCTGCCGGACCCAACTCCGGCGACGGCGACTGAGCCCTCCCACTCTGGTCAGTCCATCCAGACGCTGGTGGTGGTGCTAGCAGTCATCATAATTTTGGGTGTCATTGCTCGGATCCTGGCTCGATTCTGCGGCGGAAACCATTCCGGCGGCGGTGGTGGTGACGGAGAAAATGACATTGAAGGTTGGGTAGAAAGAACGTGCAGGAGCTGCATTGACGGCGGCGTCGGTACTCCGCCGCCGCCCCCACCGCCGGAAGCGGCGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGTGGGCAACAGCAGACGGTCAAATGCAGCCGCTGCCGGACCCAACTCCGGCGACGGCGACTGAGCCCTCCCACTCTGGTCAGTCCATCCAGACGCTGGTGGTGGTGCTAGCAGTCATCATAATTTTGGGTGTCATTGCTCGGATCCTGGCTCGATTCTGCGGCGGAAACCATTCCGGCGGCGGTGGTGGTGACGGAGAAAATGACATTGAAGGTTGGGTAGAAAGAACGTGCAGGAGCTGCATTGACGGCGGCGTCGGTACTCCGCCGCCGCCCCCACCGCCGGAAGCGGCGGAGGAGAAGAAGTGA

Protein sequence

MWATADGQMQPLPDPTPATATEPSHSGQSIQTLVVVLAVIIILGVIARILARFCGGNHSGGGGGDGENDIEGWVERTCRSCIDGGVGTPPPPPPPEAAEEKK

Homology

[Close]

BLAST of Carg22459 vs. NCBI nr
Match: XP_022928636.1 (uncharacterized protein LOC111435483 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MWATADGQMQPLPDPTPATATEPSHSGQSIQTLVXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MWATADGQMQPLPDPTPATATEPSHSGQSIQTLVXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MWATADGQMQPLPDPTPATATEPSHSGQSIQTLVXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXGWVERTCRSCIDGGVGT 89
          XXXXXXXXXXXGWVERTCRSCIDGGVGT
Sbjct: 61 XXXXXXXXXXXGWVERTCRSCIDGGVGT 88

[Close]

BLAST of Carg22459 vs. NCBI nr
Match: XP_023545070.1 (uncharacterized protein LOC111804479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 7.9e-15
Identity = 60/88 (68.18%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MWATADGQMQPLPDPTPATATEPSHSGQSIQTLVXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MWATA  QMQPLPDPTPATATEPSHSGQSIQTLV XXXXXXXXXXXX             
Sbjct: 1  MWATAANQMQPLPDPTPATATEPSHSGQSIQTLVVXXXXXXXXXXXXRILARFCGGNHSG 60

Query: 61 XXXXXXXXXXXGWVERTCRSCIDGGVGT 89
                     GWVERTCRSCIDGGV T
Sbjct: 61 GGGADGENDIEGWVERTCRSCIDGGVAT 88

[Close]

BLAST of Carg22459 vs. NCBI nr
Match: XP_022967930.1 (uncharacterized protein LOC111467296 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MWATADGQMQPLPDPTPATATEPSHSGQSIQTLVXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MWAT   QMQPLPDPTPATATEPSHS QSIQTLV XXXXXXXXXXXXXXXXXX       
Sbjct: 1  MWATPANQMQPLPDPTPATATEPSHSVQSIQTLV-XXXXXXXXXXXXXXXXXXFCGGNHS 60

Query: 61 XXXXXXXXXXXGWVERTCRSCIDGGV 87
           XXX       GWVERTCRSCIDGGV
Sbjct: 61 GXXXDGENDIEGWVERTCRSCIDGGV 85

The following BLAST results are available for this feature:

BLAST of Carg22459 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928636.1	3.8e-17	100.00	uncharacterized protein LOC111435483 [Cucurbita moschata]	[more]
XP_023545070.1	7.9e-15	68.18	uncharacterized protein LOC111804479 [Cucurbita pepo subsp. pepo]	[more]
XP_022967930.1	2.4e-11	76.74	uncharacterized protein LOC111467296 [Cucurbita maxima]	[more]

BLAST of Carg22459 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22459 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22459 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22459-RA	Carg22459-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..102
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 8..99
None	No IPR available	PANTHER	PTHR33429:SF2	SUBFAMILY NOT NAMED	coord: 8..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22459	Csa4G166970	Cucumber (Chinese Long) v2	carcuB0213
Carg22459	MELO3C023115	Melon (DHL92) v3.5.1	carmeB0196
Carg22459	ClCG04G003270	Watermelon (Charleston Gray)	carwcgB0185
Carg22459	CSPI04G10690	Wild cucumber (PI 183967)	carcpiB0221
Carg22459	Cucsa.164230	Cucumber (Gy14) v1	carcgyB0233
Carg22459	Lsi01G018520	Bottle gourd (USVL1VR-Ls)	carlsiB171
Carg22459	Cp4.1LG10g11570	Cucurbita pepo (Zucchini)	carcpeB0276
Carg22459	CsGy4G010320	Cucumber (Gy14) v2	carcgybB0205
Carg22459	MELO3C023115.2	Melon (DHL92) v3.6.1	carmedB0199
Carg22459	CsaV3_4G011800	Cucumber (Chinese Long) v3	carcucB0219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22459	Silver-seed gourd	carcarB230
Carg22459	Cucumber (Gy14) v2	carcgybB0207
Carg22459	Cucurbita maxima (Rimu)	carcmaB0266
Carg22459	Cucurbita maxima (Rimu)	carcmaB0268
Carg22459	Cucurbita moschata (Rifu)	carcmoB0273
Carg22459	Cucurbita moschata (Rifu)	carcmoB0275
Carg22459	Cucurbita pepo (Zucchini)	carcpeB0277
Carg22459	Wild cucumber (PI 183967)	carcpiB0222
Carg22459	Cucumber (Chinese Long) v2	carcuB0214
Carg22459	Cucumber (Chinese Long) v3	carcucB0220
Carg22459	Bottle gourd (USVL1VR-Ls)	carlsiB170
Carg22459	Melon (DHL92) v3.5.1	carmeB0195
Carg22459	Melon (DHL92) v3.6.1	carmedB0200
Carg22459	Watermelon (Charleston Gray)	carwcgB0184
Carg22459	Watermelon (97103) v1	carwmB0184
Carg22459	Watermelon (97103) v2	carwmbB0196
Carg22459	Wax gourd	carwgoB0242
Carg22459	Wax gourd	carwgoB0243