Csa4G166970 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G166970
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 8651302 .. 8651754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCATAAAGCCAATAAGCCATTACCACTATTCAATCTCTTTTGTTTCTCTTTACAATATATATTCAAAATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGAGATCAGGCGGGTAGAATAGTAATTAATTTCCAGGTTTTTTTCTTTAAGAATTTGGAATTTTTGTGTGATTGTATCGTAATGTAATGTAATGTAGCAGAA

mRNA sequence

ATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGAGGGCAGCTCCACCAAATGCAATCAAGCTCGACGGTCAAATGCAGCTGCTGCCGGAGCCACCCGCGGAGCCATCCCACTCCACTCGTCACTCCCTCCACACGCTCCTGGTGCTGCTGGCGGCAATCACCATTTTAGGTGTCATTGCTCGAGTTTTCGCTCGCCTTTGCGGTGGAGGAACTGATGACGACAACATTGAAGGTTGGGTTCAAACAAGGTGCAACAGCTGCATTGACGGCAGCAGCCCCCCTCCGTCGCAAGTGGCGGAGGAGGAGAAGAAGTGA

Protein sequence

MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK*

Homology

[Close]

BLAST of Csa4G166970 vs. TrEMBL
Match: A0A0A0KWC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166970 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 4.5e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG 60
          MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG
Sbjct: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 95
          TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK
Sbjct: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 94

[Close]

BLAST of Csa4G166970 vs. TrEMBL
Match: B9SUE5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0750160 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-16
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 9  IKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDN 68
          + L  Q+Q + +PP    EPS  +  S+ TL+V+LA ITI+GVIA V ARLCGG   + +
Sbjct: 6  VSLHDQLQSVVQPPPAVVEPSRYSHRSIETLVVVLAVITIVGVIAGVIARLCGGRHGEHD 65

Query: 69 IEGWVQTRCNSCIDGSSPPPSQVA----EEEKK 95
          IEGWV+ RC SCIDG  PPP++ A    EE KK
Sbjct: 66 IEGWVERRCRSCIDGGVPPPAEEAKPATEEAKK 98

[Close]

BLAST of Csa4G166970 vs. TrEMBL
Match: A0A022PSI8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018000mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 1


Query: 19  PEPPA---EP-SHSTRHSLHTLLVLLAAITILGVIARVFARLCG----GGTDDDNIEGWV 78
           P PPA   EP SHST HS+ TL+V+LA ITILGVIA V ARLCG    GG  + ++EGWV
Sbjct: 13  PPPPAVEVEPISHSTSHSIETLVVVLAVITILGVIAGVIARLCGGRHVGGHGEHDVEGWV 72

Query: 79  QTRCNSCID-----GSSPPPSQVAEEEK 94
           + +C SCID        PPP+  A+EE+
Sbjct: 73  ERKCRSCIDDGITTAPPPPPAPPAKEEE 100

[Close]

BLAST of Csa4G166970 vs. TrEMBL
Match: A0A0S3RXE3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G279700 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-14
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 11 LDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGG----GTDD 70
          +  +MQ   E P    EP+  +  S+ TL+V++A ITI+GVIA + ARLCGG    G  +
Sbjct: 1  MGSEMQPFVETPPKVVEPNRYSHRSIETLVVVIAVITIVGVIAGMIARLCGGRHFGGNGE 60

Query: 71 DNIEGWVQTRCNSCIDGSSPPPSQVAEEEK 94
          ++IEGWV+ +C SCIDG  PPPS   EE K
Sbjct: 61 NDIEGWVEKKCRSCIDGGLPPPSPPPEEPK 90

[Close]

BLAST of Csa4G166970 vs. TrEMBL
Match: A0A0L9U8I1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g216600 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-14
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 11 LDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGG----GTDD 70
          +  +MQ   E P    EP+  +  S+ TL+V++A ITI+GVIA + ARLCGG    G  +
Sbjct: 1  MGSEMQPFVETPPKVVEPNRYSHRSIETLVVVIAVITIVGVIAGMIARLCGGRHFGGNGE 60

Query: 71 DNIEGWVQTRCNSCIDGSSPPPSQVAEEEK 94
          ++IEGWV+ +C SCIDG  PPPS   EE K
Sbjct: 61 NDIEGWVEKKCRSCIDGGLPPPSPPPEEPK 90

[Close]

BLAST of Csa4G166970 vs. TAIR10
Match: AT3G57500.1 (AT3G57500.1 unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-15
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 1


Query: 10  KLDGQMQLLP-----EPPAE--PSHSTRH-SLHTLLVLLAAITILGVIARVFARLCGG-- 69
           +LD Q+   P     +PP++  PSH++ H S+ TL+V+LA ITIL V+A VFARLCGG  
Sbjct: 7   RLDDQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRH 66

Query: 70  ---GTDDDNIEGWVQTRCNSCIDGS-----------SPPPSQVAEEEKK 95
              G D D IEGWV+ +C SCID              PPP   AEE  K
Sbjct: 67  LSHGGDHD-IEGWVERKCRSCIDAGIPAVSAAPSPPPPPPPATAEERSK 114

[Close]

BLAST of Csa4G166970 vs. TAIR10
Match: AT2G26520.1 (AT2G26520.1 unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 9.9e-06
Identity = 25/76 (32.89%), Postives = 36/76 (47.37%), Query Frame = 1


Query: 26 SHSTRHSLHTLLVLLAAITILGVIARVFARLCGG----GTDDDNIEGWVQTRCNSCIDG- 85
          S +   ++   + +   +T+L V+A V  RLC G    G  D ++E W ++RC SCIDG 
Sbjct: 24 SSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWAESRCGSCIDGH 83

Query: 86 ---------SSPPPSQ 88
                    +PPP Q
Sbjct: 84 IHPHRPSPSPTPPPRQ 99

[Close]

BLAST of Csa4G166970 vs. NCBI nr
Match: gi|700198695|gb|KGN53853.1| (hypothetical protein Csa_4G166970 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 6.4e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG 60
          MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG
Sbjct: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 95
          TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK
Sbjct: 61 TDDDNIEGWVQTRCNSCIDGSSPPPSQVAEEEKK 94

[Close]

BLAST of Csa4G166970 vs. NCBI nr
Match: gi|659121643|ref|XP_008460761.1| (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 1


Query: 1  MRAAPPNAIKLDGQMQLLPEPPAEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG 60
          MRA PPNAIKLDGQMQLLPEPPAEPSHSTRHS+ TLLVLLAAITILGVIARVFARLC GG
Sbjct: 1  MRAPPPNAIKLDGQMQLLPEPPAEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGG 60

Query: 61 TDDDNIEGWVQTRCNSCIDGSS--PPPSQVAEEEKK 95
          TDD  IEGWVQTRCNSCIDGSS   PPS+VAEEEKK
Sbjct: 61 TDD--IEGWVQTRCNSCIDGSSLPAPPSEVAEEEKK 94

[Close]

BLAST of Csa4G166970 vs. NCBI nr
Match: gi|731399919|ref|XP_010653790.1| (PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera])

HSP 1 Score: 95.1 bits (235), Expect = 6.9e-17
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 8   AIKLDGQMQ-LLPEPPA--EPSHSTRHSLHTLLVLLAAITILGVIARVFARLCG----GG 67
           A+++D Q+  L+  PPA  EPSHST  S+ TL+V+LA ITI+GVIA + ARLCG    GG
Sbjct: 9   AVRMDEQLPPLVQAPPAVGEPSHSTHRSIETLVVVLAVITIVGVIAGIIARLCGGRHFGG 68

Query: 68  TDDDNIEGWVQTRCNSCIDG---SSPPPSQVAEEEK 94
             +++IEGWV+ +C SCIDG   ++PPP   AEE K
Sbjct: 69  NGENDIEGWVERKCRSCIDGGIPAAPPPPPPAEESK 104

[Close]

BLAST of Csa4G166970 vs. NCBI nr
Match: gi|1000945837|ref|XP_015581142.1| (PREDICTED: uncharacterized protein LOC8260149 [Ricinus communis])

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-16
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 9   IKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDN 68
           + L  Q+Q + +PP    EPS  +  S+ TL+V+LA ITI+GVIA V ARLCGG   + +
Sbjct: 12  VSLHDQLQSVVQPPPAVVEPSRYSHRSIETLVVVLAVITIVGVIAGVIARLCGGRHGEHD 71

Query: 69  IEGWVQTRCNSCIDGSSPPPSQVA----EEEKK 95
           IEGWV+ RC SCIDG  PPP++ A    EE KK
Sbjct: 72  IEGWVERRCRSCIDGGVPPPAEEAKPATEEAKK 104

[Close]

BLAST of Csa4G166970 vs. NCBI nr
Match: gi|223530899|gb|EEF32759.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-16
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 9  IKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDN 68
          + L  Q+Q + +PP    EPS  +  S+ TL+V+LA ITI+GVIA V ARLCGG   + +
Sbjct: 6  VSLHDQLQSVVQPPPAVVEPSRYSHRSIETLVVVLAVITIVGVIAGVIARLCGGRHGEHD 65

Query: 69 IEGWVQTRCNSCIDGSSPPPSQVA----EEEKK 95
          IEGWV+ RC SCIDG  PPP++ A    EE KK
Sbjct: 66 IEGWVERRCRSCIDGGVPPPAEEAKPATEEAKK 98

The following BLAST results are available for this feature:

BLAST of Csa4G166970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWC6_CUCSA	4.5e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166970 PE=4 SV=1	[more]
B9SUE5_RICCO	4.1e-16	51.61	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0750160 PE=4 SV=1	[more]
A0A022PSI8_ERYGU	5.0e-14	54.55	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018000mg PE=4 SV=1	[more]
A0A0S3RXE3_PHAAN	8.5e-14	47.78	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G279700 PE=...	[more]
A0A0L9U8I1_PHAAN	8.5e-14	47.78	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g216600 PE=4 SV=1	[more]

BLAST of Csa4G166970 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57500.1	1.8e-15	45.87	unknown protein	[more]
AT2G26520.1	9.9e-06	32.89	unknown protein	[more]

BLAST of Csa4G166970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198695\|gb\|KGN53853.1\|	6.4e-47	100.00	hypothetical protein Csa_4G166970 [Cucumis sativus]	[more]
gi\|659121643\|ref\|XP_008460761.1\|	1.4e-38	89.58	PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo]	[more]
gi\|731399919\|ref\|XP_010653790.1\|	6.9e-17	53.13	PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera]	[more]
gi\|1000945837\|ref\|XP_015581142.1\|	5.8e-16	51.61	PREDICTED: uncharacterized protein LOC8260149 [Ricinus communis]	[more]
gi\|223530899\|gb\|EEF32759.1\|	5.8e-16	51.61	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU113022	cucumber EST collection version 3.0	transcribed_cluster
CU113899	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G166970.1	Csa4G166970.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU113899	CU113899	transcribed_cluster
CU113022	CU113022	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 1..94 score: 9.1
None	No IPR available	PANTHER	PTHR33429:SF2	SUBFAMILY NOT NAMED	coord: 1..94 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G166970	MELO3C023115	Melon (DHL92) v3.5.1	cumeB331
Csa4G166970	ClCG04G003270	Watermelon (Charleston Gray)	cuwcgB299
Csa4G166970	Lsi01G018520	Bottle gourd (USVL1VR-Ls)	culsiB260
Csa4G166970	MELO3C023115.2	Melon (DHL92) v3.6.1	cumedB313
Csa4G166970	Cla97C04G070430	Watermelon (97103) v2	cuwmbB296
Csa4G166970	Bhi03G001930	Wax gourd	cuwgoB411
Csa4G166970	CSPI04G10690	Wild cucumber (PI 183967)	cpicuB182
Csa4G166970	Cucsa.164230	Cucumber (Gy14) v1	cgycuB246
Csa4G166970	CsGy4G010320	Cucumber (Gy14) v2	cgybcuB165
Csa4G166970	Carg22459	Silver-seed gourd	carcuB0213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G166970	Wax gourd	cuwgoB392
Csa4G166970	Cucurbita maxima (Rimu)	cmacuB666
Csa4G166970	Cucurbita maxima (Rimu)	cmacuB673
Csa4G166970	Cucurbita maxima (Rimu)	cmacuB868
Csa4G166970	Cucurbita moschata (Rifu)	cmocuB654
Csa4G166970	Cucurbita moschata (Rifu)	cmocuB662
Csa4G166970	Cucurbita moschata (Rifu)	cmocuB857
Csa4G166970	Cucurbita pepo (Zucchini)	cpecuB074
Csa4G166970	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G166970	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G166970	Silver-seed gourd	carcuB0313