Cla97C04G070430 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C04G070430
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr04 : 11962140 .. 11962391 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTGCTGCCGGACCCACCGCCGGAGGCGACGGAGCCATCCCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTTCTGCTGGCGGCGATCACTATTTTCGGTGTCATTGCCCGAGCTTTCGCTCGCCTCTGCGGCGGAGGAACCGACATTGAAAGTTGGGTTGAAAGAAGGTGCAAGAGCTGCATTGACGGCGGTCTCCCTGCTCCGTCGCTGCCACCACCGGAAGTGGCGGAGGAGAAGAAGTGA

mRNA sequence

ATGCAGCTGCTGCCGGACCCACCGCCGGAGGCGACGGAGCCATCCCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTTCTGCTGGCGGCGATCACTATTTTCGGTGTCATTGCCCGAGCTTTCGCTCGCCTCTGCGGCGGAGGAACCGACATTGAAAGTTGGGTTGAAAGAAGGTGCAAGAGCTGCATTGACGGCGGTCTCCCTGCTCCGTCGCTGCCACCACCGGAAGTGGCGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGCAGCTGCTGCCGGACCCACCGCCGGAGGCGACGGAGCCATCCCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTTCTGCTGGCGGCGATCACTATTTTCGGTGTCATTGCCCGAGCTTTCGCTCGCCTCTGCGGCGGAGGAACCGACATTGAAAGTTGGGTTGAAAGAAGGTGCAAGAGCTGCATTGACGGCGGTCTCCCTGCTCCGTCGCTGCCACCACCGGAAGTGGCGGAGGAGAAGAAGTGA

Protein sequence

MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGTDIESWVERRCKSCIDGGLPAPSLPPPEVAEEKK

Homology

[Close]

BLAST of Cla97C04G070430 vs. NCBI nr
Match: XP_008460761.1 (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-22
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGT-DIESWVERR 60
          MQLLP+PP    EPSHSTRHS++TL+VLLAAITI GVIAR FARLC GGT DIE WV+ R
Sbjct: 15 MQLLPEPP---AEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGGTDDIEGWVQTR 74

Query: 61 CKSCIDG-GLPAPSLPPPEVAEEKK 84
          C SCIDG  LPA   PP EVAEE+K
Sbjct: 75 CNSCIDGSSLPA---PPSEVAEEEK 93

[Close]

BLAST of Cla97C04G070430 vs. NCBI nr
Match: XP_006381013.2 (uncharacterized protein LOC18099837 [Populus trichocarpa] >PNT29854.1 hypothetical protein POPTR_006G052500v3 [Populus trichocarpa])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 2  QLLP--DPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDI 61
          QL P   PPP   +PS +T HSIETLVV+LA ITI  VIA   ARLCG       G  DI
Sbjct: 11 QLTPAVQPPPAVAKPSGNTNHSIETLVVVLAVITIAAVIAGIIARLCGGRHFGGNGEHDI 70

Query: 62 ESWVERRCKSCIDGGLPAPSLPPPEVAEEK 83
          E WVE RC++CIDGG+PA    PP+ AE K
Sbjct: 71 EGWVESRCRNCIDGGIPA---APPQPAEAK 97

[Close]

BLAST of Cla97C04G070430 vs. NCBI nr
Match: PIN10285.1 (hypothetical protein CDL12_17132 [Handroanthus impetiginosus] >PIN20013.1 hypothetical protein CDL12_07302 [Handroanthus impetiginosus])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 4  LPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWV 63
          L +PPP   +PSHST HSIETLVV+LAAITI GVIA   ARLCG       G  D+E WV
Sbjct: 7  LVEPPP--VQPSHSTPHSIETLVVVLAAITIIGVIAGVIARLCGGQHFGGSGEHDVEGWV 66

Query: 64 ERRCKSCIDGGLP 70
          ER+C+SCID G+P
Sbjct: 67 ERKCRSCIDAGVP 77

[Close]

BLAST of Cla97C04G070430 vs. NCBI nr
Match: XP_012485545.1 (PREDICTED: uncharacterized protein LOC105799500 [Gossypium raimondii] >KJB36022.1 hypothetical protein B456_006G137500 [Gossypium raimondii])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8   PPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWVERRC 67
           PP   EPS  +  SIETL+V+LAAITI GVIA   ARLCG       G  DIE W+E +C
Sbjct: 16  PPTVREPSRYSHRSIETLIVVLAAITIIGVIAGIIARLCGGRHFGGNGENDIEGWIENKC 75

Query: 68  KSCIDGGLPAPSLPP-----PEVAEEKK 84
           +SCIDGG+PA   PP     P   EEKK
Sbjct: 76  RSCIDGGVPAAVPPPKEEPKPAREEEKK 103

[Close]

BLAST of Cla97C04G070430 vs. NCBI nr
Match: XP_016669294.1 (PREDICTED: uncharacterized protein LOC107889399 [Gossypium hirsutum] >XP_017610212.1 PREDICTED: uncharacterized protein LOC108456128 [Gossypium arboreum])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8   PPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWVERRC 67
           PP   EPS  +  SIETL+V+LAAITI GVIA   ARLCG       G  DIE W+E +C
Sbjct: 16  PPTVREPSRYSHRSIETLIVVLAAITIIGVIAGIIARLCGGRHFGGNGENDIEGWIENKC 75

Query: 68  KSCIDGGLPAPSLPP-----PEVAEEKK 84
           +SCIDGG+PA   PP     P   EEKK
Sbjct: 76  RSCIDGGVPAAVPPPKEEPKPAREEEKK 103

[Close]

BLAST of Cla97C04G070430 vs. TrEMBL
Match: tr|A0A1S3CEC8|A0A1S3CEC8_CUCME (uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGT-DIESWVERR 60
          MQLLP+PP    EPSHSTRHS++TL+VLLAAITI GVIAR FARLC GGT DIE WV+ R
Sbjct: 15 MQLLPEPP---AEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGGTDDIEGWVQTR 74

Query: 61 CKSCIDG-GLPAPSLPPPEVAEEKK 84
          C SCIDG  LPA   PP EVAEE+K
Sbjct: 75 CNSCIDGSSLPA---PPSEVAEEEK 93

[Close]

BLAST of Cla97C04G070430 vs. TrEMBL
Match: tr|A0A2K1ZX51|A0A2K1ZX51_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G052500v3 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 2  QLLP--DPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDI 61
          QL P   PPP   +PS +T HSIETLVV+LA ITI  VIA   ARLCG       G  DI
Sbjct: 11 QLTPAVQPPPAVAKPSGNTNHSIETLVVVLAVITIAAVIAGIIARLCGGRHFGGNGEHDI 70

Query: 62 ESWVERRCKSCIDGGLPAPSLPPPEVAEEK 83
          E WVE RC++CIDGG+PA    PP+ AE K
Sbjct: 71 EGWVESRCRNCIDGGIPA---APPQPAEAK 97

[Close]

BLAST of Cla97C04G070430 vs. TrEMBL
Match: tr|A0A2G9HRE4|A0A2G9HRE4_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07302 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.5e-15
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 4  LPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWV 63
          L +PPP   +PSHST HSIETLVV+LAAITI GVIA   ARLCG       G  D+E WV
Sbjct: 7  LVEPPP--VQPSHSTPHSIETLVVVLAAITIIGVIAGVIARLCGGQHFGGSGEHDVEGWV 66

Query: 64 ERRCKSCIDGGLP 70
          ER+C+SCID G+P
Sbjct: 67 ERKCRSCIDAGVP 77

[Close]

BLAST of Cla97C04G070430 vs. TrEMBL
Match: tr|A0A1U8I0U8|A0A1U8I0U8_GOSHI (uncharacterized protein LOC107889399 OS=Gossypium hirsutum OX=3635 GN=LOC107889399 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8   PPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWVERRC 67
           PP   EPS  +  SIETL+V+LAAITI GVIA   ARLCG       G  DIE W+E +C
Sbjct: 16  PPTVREPSRYSHRSIETLIVVLAAITIIGVIAGIIARLCGGRHFGGNGENDIEGWIENKC 75

Query: 68  KSCIDGGLPAPSLPP-----PEVAEEKK 84
           +SCIDGG+PA   PP     P   EEKK
Sbjct: 76  RSCIDGGVPAAVPPPKEEPKPAREEEKK 103

[Close]

BLAST of Cla97C04G070430 vs. TrEMBL
Match: tr|A0A0D2NSG3|A0A0D2NSG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G137500 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8   PPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWVERRC 67
           PP   EPS  +  SIETL+V+LAAITI GVIA   ARLCG       G  DIE W+E +C
Sbjct: 16  PPTVREPSRYSHRSIETLIVVLAAITIIGVIAGIIARLCGGRHFGGNGENDIEGWIENKC 75

Query: 68  KSCIDGGLPAPSLPP-----PEVAEEKK 84
           +SCIDGG+PA   PP     P   EEKK
Sbjct: 76  RSCIDGGVPAAVPPPKEEPKPAREEEKK 103

[Close]

BLAST of Cla97C04G070430 vs. TAIR10
Match: AT3G57500.1 (unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-16
Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 8  PPEATEPSHSTRH-SIETLVVLLAAITIFGVIARAFARLC-------GGGTDIESWVERR 67
          PP   +PSH++ H SIETLVV+LA ITI  V+A  FARLC       GG  DIE WVER+
Sbjct: 23 PPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERK 82

Query: 68 CKSCIDGGLPAPS 73
          C+SCID G+PA S
Sbjct: 83 CRSCIDAGIPAVS 95

The following BLAST results are available for this feature:

BLAST of Cla97C04G070430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460761.1	5.4e-22	72.94	PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo]	[more]
XP_006381013.2	1.1e-14	56.67	uncharacterized protein LOC18099837 [Populus trichocarpa] >PNT29854.1 hypothetic...	[more]
PIN10285.1	1.4e-14	63.01	hypothetical protein CDL12_17132 [Handroanthus impetiginosus] >PIN20013.1 hypoth...	[more]
XP_012485545.1	3.2e-14	54.55	PREDICTED: uncharacterized protein LOC105799500 [Gossypium raimondii] >KJB36022....	[more]
XP_016669294.1	3.2e-14	54.55	PREDICTED: uncharacterized protein LOC107889399 [Gossypium hirsutum] >XP_0176102...	[more]

BLAST of Cla97C04G070430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEC8\|A0A1S3CEC8_CUCME	3.6e-22	72.94	uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=...	[more]
tr\|A0A2K1ZX51\|A0A2K1ZX51_POPTR	7.3e-15	56.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G052500v3 PE=...	[more]
tr\|A0A2G9HRE4\|A0A2G9HRE4_9LAMI	9.5e-15	63.01	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07302 P...	[more]
tr\|A0A1U8I0U8\|A0A1U8I0U8_GOSHI	2.1e-14	54.55	uncharacterized protein LOC107889399 OS=Gossypium hirsutum OX=3635 GN=LOC1078893...	[more]
tr\|A0A0D2NSG3\|A0A0D2NSG3_GOSRA	2.1e-14	54.55	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G137500 PE=4 ...	[more]

BLAST of Cla97C04G070430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C04G070430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57500.1	1.4e-16	58.90	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G070430.1	Cla97C04G070430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429:SF2	SUBFAMILY NOT NAMED	coord: 6..75
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 6..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C04G070430	Cla006118	Watermelon (97103) v1	wmwmbB293
Cla97C04G070430	Csa4G166970	Cucumber (Chinese Long) v2	cuwmbB296
Cla97C04G070430	MELO3C023115	Melon (DHL92) v3.5.1	mewmbB544
Cla97C04G070430	ClCG04G003270	Watermelon (Charleston Gray)	wcgwmbB200
Cla97C04G070430	CSPI04G10690	Wild cucumber (PI 183967)	cpiwmbB304
Cla97C04G070430	Lsi01G018520	Bottle gourd (USVL1VR-Ls)	lsiwmbB142
Cla97C04G070430	CsGy4G010320	Cucumber (Gy14) v2	cgybwmbB280
Cla97C04G070430	MELO3C023115.2	Melon (DHL92) v3.6.1	medwmbB531
Cla97C04G070430	CsaV3_4G011800	Cucumber (Chinese Long) v3	cucwmbB303

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C04G070430	Cucurbita maxima (Rimu)	cmawmbB691
Cla97C04G070430	Cucurbita moschata (Rifu)	cmowmbB664
Cla97C04G070430	Watermelon (97103) v1	wmwmbB296