Cla006118 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006118
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 13785951 .. 13786202 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTGCTGCCGGACCCACCGCCGGAGGCGACGGAGCCATCCCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTTCTGCTGGCGGCGATCACTATTTTCGGTGTCATTGCCCGAGCTTTCGCTCGCCTCTGCGGCGGAGGAACCGACATTGAAAGTTGGGTTGAAAGAAGGTGCAAGAGCTGCATTGACGGCGGTCTCCCTGCTCCGTCGCTGCCACCACCGGAAGTGGCGGAGGAGAAGAAGTGA

mRNA sequence

ATGCAGCTGCTGCCGGACCCACCGCCGGAGGCGACGGAGCCATCCCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTTCTGCTGGCGGCGATCACTATTTTCGGTGTCATTGCCCGAGCTTTCGCTCGCCTCTGCGGCGGAGGAACCGACATTGAAAGTTGGGTTGAAAGAAGGTGCAAGAGCTGCATTGACGGCGGTCTCCCTGCTCCGTCGCTGCCACCACCGGAAGTGGCGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGCAGCTGCTGCCGGACCCACCGCCGGAGGCGACGGAGCCATCCCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTTCTGCTGGCGGCGATCACTATTTTCGGTGTCATTGCCCGAGCTTTCGCTCGCCTCTGCGGCGGAGGAACCGACATTGAAAGTTGGGTTGAAAGAAGGTGCAAGAGCTGCATTGACGGCGGTCTCCCTGCTCCGTCGCTGCCACCACCGGAAGTGGCGGAGGAGAAGAAGTGA

Protein sequence

MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGTDIESWVERRCKSCIDGGLPAPSLPPPEVAEEKK

Homology

[Close]

BLAST of Cla006118 vs. TrEMBL
Match: A0A0A0KWC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166970 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-23
Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGTD---IESWVE 60
          MQLLP+PP    EPSHSTRHS+ TL+VLLAAITI GVIAR FARLCGGGTD   IE WV+
Sbjct: 15 MQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDNIEGWVQ 74

Query: 61 RRCKSCIDGGLPAPSLPPPEVAEEKK 84
           RC SCIDG  P    PP +VAEE+K
Sbjct: 75 TRCNSCIDGSSP----PPSQVAEEEK 93

[Close]

BLAST of Cla006118 vs. TrEMBL
Match: B9SUE5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0750160 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-17
Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG---GGTDIESWVE 60
          +Q +  PPP   EPS  +  SIETLVV+LA ITI GVIA   ARLCG   G  DIE WVE
Sbjct: 12 LQSVVQPPPAVVEPSRYSHRSIETLVVVLAVITIVGVIAGVIARLCGGRHGEHDIEGWVE 71

Query: 61 RRCKSCIDGGLPAPSLPPPEVAEEKK 84
          RRC+SCIDGG+P P+       EE K
Sbjct: 72 RRCRSCIDGGVPPPAEEAKPATEEAK 97

[Close]

BLAST of Cla006118 vs. TrEMBL
Match: A0A067JT86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21076 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-17
Identity = 48/81 (59.26%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 3  LLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESW 62
          L P P P   EP+  +  SIETLVV+LA ITI GVIA   ARLCG       G  DIE W
Sbjct: 16 LEPPPTPATAEPNRYSHRSIETLVVVLAVITIVGVIAGIIARLCGGRHFGSNGEHDIEGW 75

Query: 63 VERRCKSCIDGGLPAPSLPPP 77
          +ERRC+SCIDGGLP P  PPP
Sbjct: 76 IERRCRSCIDGGLPPPPPPPP 96

[Close]

BLAST of Cla006118 vs. TrEMBL
Match: A0A0S3RXE3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G279700 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-17
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIE 60
          MQ   + PP+  EP+  +  SIETLVV++A ITI GVIA   ARLCG       G  DIE
Sbjct: 5  MQPFVETPPKVVEPNRYSHRSIETLVVVIAVITIVGVIAGMIARLCGGRHFGGNGENDIE 64

Query: 61 SWVERRCKSCIDGGLPAPSLPPPE 78
           WVE++C+SCIDGGLP PS PP E
Sbjct: 65 GWVEKKCRSCIDGGLPPPSPPPEE 88

[Close]

BLAST of Cla006118 vs. TrEMBL
Match: A0A0L9U8I1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g216600 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-17
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIE 60
          MQ   + PP+  EP+  +  SIETLVV++A ITI GVIA   ARLCG       G  DIE
Sbjct: 5  MQPFVETPPKVVEPNRYSHRSIETLVVVIAVITIVGVIAGMIARLCGGRHFGGNGENDIE 64

Query: 61 SWVERRCKSCIDGGLPAPSLPPPE 78
           WVE++C+SCIDGGLP PS PP E
Sbjct: 65 GWVEKKCRSCIDGGLPPPSPPPEE 88

[Close]

BLAST of Cla006118 vs. NCBI nr
Match: gi|700198695|gb|KGN53853.1| (hypothetical protein Csa_4G166970 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 9.6e-23
Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGTD---IESWVE 60
          MQLLP+PP    EPSHSTRHS+ TL+VLLAAITI GVIAR FARLCGGGTD   IE WV+
Sbjct: 15 MQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGGTDDDNIEGWVQ 74

Query: 61 RRCKSCIDGGLPAPSLPPPEVAEEKK 84
           RC SCIDG  P    PP +VAEE+K
Sbjct: 75 TRCNSCIDGSSP----PPSQVAEEEK 93

[Close]

BLAST of Cla006118 vs. NCBI nr
Match: gi|659121643|ref|XP_008460761.1| (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 9.6e-23
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 1


Query: 1  MQLLPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGGGT-DIESWVERR 60
          MQLLP+PP    EPSHSTRHS++TL+VLLAAITI GVIAR FARLC GGT DIE WV+ R
Sbjct: 15 MQLLPEPP---AEPSHSTRHSVQTLLVLLAAITILGVIARVFARLCDGGTDDIEGWVQTR 74

Query: 61 CKSCIDG-GLPAPSLPPPEVAEEKK 84
          C SCIDG  LPA   PP EVAEE+K
Sbjct: 75 CNSCIDGSSLPA---PPSEVAEEEK 93

[Close]

BLAST of Cla006118 vs. NCBI nr
Match: gi|731399919|ref|XP_010653790.1| (PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 52/86 (60.47%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 4   LPDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDIESWV 63
           L   PP   EPSHST  SIETLVV+LA ITI GVIA   ARLCG       G  DIE WV
Sbjct: 19  LVQAPPAVGEPSHSTHRSIETLVVVLAVITIVGVIAGIIARLCGGRHFGGNGENDIEGWV 78

Query: 64  ERRCKSCIDGGLPAPSLPPPEVAEEK 83
           ER+C+SCIDGG+PA   PPP   E K
Sbjct: 79  ERKCRSCIDGGIPAAPPPPPPAEESK 104

[Close]

BLAST of Cla006118 vs. NCBI nr
Match: gi|702247812|ref|XP_010057245.1| (PREDICTED: uncharacterized protein LOC104445124 [Eucalyptus grandis])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 53/96 (55.21%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 5   PDPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCGG-------GTDIESWVE 64
           P PPP A EP    R SIETLVV+LAAITI GV+A   ARLCGG         DIE WVE
Sbjct: 31  PPPPPSAAEPGRYARRSIETLVVVLAAITIIGVVAGIVARLCGGRLLGGSRDNDIEGWVE 90

Query: 65  RRCKSCIDGGLPAPS-----------LPPPEVAEEK 83
           RRC+SCID GLP P             P PE AE+K
Sbjct: 91  RRCRSCIDSGLPPPEEKPAEAPAQAPAPEPEQAEKK 126

[Close]

BLAST of Cla006118 vs. NCBI nr
Match: gi|743817160|ref|XP_011020353.1| (PREDICTED: uncharacterized protein LOC105122764 [Populus euphratica])

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-17
Identity = 51/85 (60.00%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 2  QLLP--DPPPEATEPSHSTRHSIETLVVLLAAITIFGVIARAFARLCG-------GGTDI 61
          QL P   PPP   +PS +T HSIETLVV+LA ITI  VIA   ARLCG       G  DI
Sbjct: 11 QLTPVVQPPPAVAKPSGNTNHSIETLVVVLAVITIAAVIAGILARLCGGRHFGGNGEHDI 70

Query: 62 ESWVERRCKSCIDGGLPAPSLPPPE 78
          E WVE RC+SCIDGG+PAP  PP E
Sbjct: 71 EGWVESRCRSCIDGGIPAPPPPPAE 95

The following BLAST results are available for this feature:

BLAST of Cla006118 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWC6_CUCSA	6.7e-23	69.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166970 PE=4 SV=1	[more]
B9SUE5_RICCO	4.2e-17	56.98	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0750160 PE=4 SV=1	[more]
A0A067JT86_JATCU	7.2e-17	59.26	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21076 PE=4 SV=1	[more]
A0A0S3RXE3_PHAAN	9.4e-17	55.95	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G279700 PE=...	[more]
A0A0L9U8I1_PHAAN	9.4e-17	55.95	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g216600 PE=4 SV=1	[more]

BLAST of Cla006118 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198695\|gb\|KGN53853.1\|	9.6e-23	69.77	hypothetical protein Csa_4G166970 [Cucumis sativus]	[more]
gi\|659121643\|ref\|XP_008460761.1\|	9.6e-23	72.94	PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo]	[more]
gi\|731399919\|ref\|XP_010653790.1\|	1.1e-18	60.47	PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera]	[more]
gi\|702247812\|ref\|XP_010057245.1\|	1.6e-17	55.21	PREDICTED: uncharacterized protein LOC104445124 [Eucalyptus grandis]	[more]
gi\|743817160\|ref\|XP_011020353.1\|	4.6e-17	60.00	PREDICTED: uncharacterized protein LOC105122764 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006118	Cla006118.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 1..77 score: 2.2
None	No IPR available	PANTHER	PTHR33429:SF2	SUBFAMILY NOT NAMED	coord: 1..77 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006118	Cla97C04G070430	Watermelon (97103) v2	wmwmbB293
Cla006118	ClCG04G003270	Watermelon (Charleston Gray)	wcgwmB257
Cla006118	CSPI04G10690	Wild cucumber (PI 183967)	cpiwmB344
Cla006118	CsGy4G010320	Cucumber (Gy14) v2	cgybwmB313
Cla006118	CsaV3_4G011800	Cucumber (Chinese Long) v3	cucwmB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None