CsGy4G008640 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G008640
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein
Location	Chr4 : 6642237 .. 6642701 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCAGGGACGAGCAACAATCAGAAAGCCCTAGATTCGAGAGACATGGTCAACAGAGGCGGGGTTGAGCTAATTAGGAATTGCGATCTTCCGCCGCCGCAGAAGGTATTCAAGAGTGGGATGGAGGAAAAAATGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCAAGAGAGGCGGAGAGGAAGGCGGCAAAATTGATGGAGGAAAGGGATTGTATTAGTAGGGCTTTTGAAGACGAGGCCAGAATGGTGTTCTGTTATCGACAATCCCTCAAATTGCTGGAGCTCAGGGTTTTCAAGTTGCAGAAACAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAAGTGATAAGAATGGTGGAAATGGAGGAATGAAATGGGTTTGGGCTTTGGCTATTTGTTTGAGTGTTGTTGGAGTTGGCTTTCTTTTGGGCTATACATGTAATCCTTCATGA

mRNA sequence

ATGAAGGCAGGGACGAGCAACAATCAGAAAGCCCTAGATTCGAGAGACATGGTCAACAGAGGCGGGGTTGAGCTAATTAGGAATTGCGATCTTCCGCCGCCGCAGAAGGTATTCAAGAGTGGGATGGAGGAAAAAATGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCAAGAGAGGCGGAGAGGAAGGCGGCAAAATTGATGGAGGAAAGGGATTGTATTAGTAGGGCTTTTGAAGACGAGGCCAGAATGGTGTTCTGTTATCGACAATCCCTCAAATTGCTGGAGCTCAGGGTTTTCAAGTTGCAGAAACAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAAGTGATAAGAATGGTGGAAATGGAGGAATGAAATGGGTTTGGGCTTTGGCTATTTGTTTGAGTGTTGTTGGAGTTGGCTTTCTTTTGGGCTATACATGTAATCCTTCATGA

Coding sequence (CDS)

ATGAAGGCAGGGACGAGCAACAATCAGAAAGCCCTAGATTCGAGAGACATGGTCAACAGAGGCGGGGTTGAGCTAATTAGGAATTGCGATCTTCCGCCGCCGCAGAAGGTATTCAAGAGTGGGATGGAGGAAAAAATGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCAAGAGAGGCGGAGAGGAAGGCGGCAAAATTGATGGAGGAAAGGGATTGTATTAGTAGGGCTTTTGAAGACGAGGCCAGAATGGTGTTCTGTTATCGACAATCCCTCAAATTGCTGGAGCTCAGGGTTTTCAAGTTGCAGAAACAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAAGTGATAAGAATGGTGGAAATGGAGGAATGAAATGGGTTTGGGCTTTGGCTATTTGTTTGAGTGTTGTTGGAGTTGGCTTTCTTTTGGGCTATACATGTAATCCTTCATGA

Protein sequence

MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEESDKNGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS

Homology

[Close]

BLAST of CsGy4G008640 vs. NCBI nr
Match: XP_011653361.1 (PREDICTED: uncharacterized protein LOC105435202 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 8.5e-53
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR
Sbjct: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFXXXXXXXXXXXXXXXXXX 120
           EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFXXXXXXXXXXXXXXXXXX
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSVVGVGFLLGYTCNPS 155
           XXXXXXXXXXXXXXXXXXSVVGVGFLLGYTCNPS
Sbjct: 121 XXXXXXXXXXXXXXXXXXSVVGVGFLLGYTCNPS 154

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BLAST of CsGy4G008640 vs. NCBI nr
Match: KGN53662.1 (hypothetical protein Csa_4G097690 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 6.9e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR
Sbjct: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVF 103
           EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVF
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVF 102

[Close]

BLAST of CsGy4G008640 vs. NCBI nr
Match: XP_008455680.1 (PREDICTED: uncharacterized protein LOC103495794 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 5.5e-44
Identity = 131/156 (83.97%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKA TSNN+++LDSRDMV R GVELIRNCDLPPPQKVFKSGMEEK+ELLKALRLSQTRAR
Sbjct: 1   MKAATSNNRQSLDSRDMVQRDGVELIRNCDLPPPQKVFKSGMEEKIELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLE--LRVFXXXXXXXXXXXXXXXX 120
           EAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKLLE      XXXXXXXXXXXXXXXX
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARLMFCYRQSLKLLEXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXSVVGVGFLLGYTCNPS 155
           XXXXXXXXXX          SVVGVGFLLGYTCNPS
Sbjct: 121 XXXXXXXXXXKWVWALAICLSVVGVGFLLGYTCNPS 156

[Close]

BLAST of CsGy4G008640 vs. NCBI nr
Match: XP_022970087.1 (uncharacterized protein LOC111469054 [Cucurbita maxima])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 7   NNQKALDSRDMV----NRGGVELIRNCDLPPPQKVFKS-------------------GME 66
           +N +ALDS DM+     + GV+LIRNCDLPPPQK+F +                   GME
Sbjct: 60  SNPEALDSTDMLLEFPYKPGVDLIRNCDLPPPQKLFTASDKGAMAARGRGREEVEAGGME 119

Query: 67  EKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRV 102
           EK+ELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKL+ELRV
Sbjct: 120 EKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 177

[Close]

BLAST of CsGy4G008640 vs. NCBI nr
Match: XP_023545135.1 (uncharacterized protein LOC111804522 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 7   NNQKALDSRDMV----NRGGVELIRNCDLPPPQKVFKS-------------------GME 66
           +N +ALDS DM+     + GV+LIRNCDLPPPQK+F +                   GME
Sbjct: 18  SNPEALDSTDMLLEFPYKPGVDLIRNCDLPPPQKLFTASDKGAMAARGRGREEVETGGME 77

Query: 67  EKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRV 102
           EK+ELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKL+ELRV
Sbjct: 78  EKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRV 135

[Close]

BLAST of CsGy4G008640 vs. TAIR10
Match: AT1G01240.1 (unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 41/124 (33.06%), Postives = 52/124 (41.94%), Query Frame = 0


Query: 26  IRNCDLPPPQKVFKS----------------------------------GMEE------- 85
           I+NCDLPPPQK+ KS                                  G  E       
Sbjct: 141 IQNCDLPPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPM 200

Query: 86  ---------KMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLK 100
                    K +LL+ALR SQTRAREAER A +   E+D +      +A  +  Y+Q LK
Sbjct: 201 SSPRSDDLSKGQLLEALRHSQTRAREAERAAREACAEKDRVITILLKQASQMLAYKQWLK 260

[Close]

BLAST of CsGy4G008640 vs. TAIR10
Match: AT2G46550.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 45  KMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLEL 100
           K ELL+ALR SQTRAREAE  A +   E++ + +    +A  +F Y+Q L+LL+L
Sbjct: 263 KSELLEALRRSQTRAREAENMAKEAYAEKEHLVKILLKQAAELFGYKQWLQLLQL 317

[Close]

BLAST of CsGy4G008640 vs. TrEMBL
Match: tr|A0A0A0KZ57|A0A0A0KZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097690 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.6e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR
Sbjct: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVF 103
           EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVF
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVF 102

[Close]

BLAST of CsGy4G008640 vs. TrEMBL
Match: tr|A0A1S3C2P7|A0A1S3C2P7_CUCME (uncharacterized protein LOC103495794 OS=Cucumis melo OX=3656 GN=LOC103495794 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.6e-44
Identity = 131/156 (83.97%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKA TSNN+++LDSRDMV R GVELIRNCDLPPPQKVFKSGMEEK+ELLKALRLSQTRAR
Sbjct: 1   MKAATSNNRQSLDSRDMVQRDGVELIRNCDLPPPQKVFKSGMEEKIELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLE--LRVFXXXXXXXXXXXXXXXX 120
           EAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKLLE      XXXXXXXXXXXXXXXX
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARLMFCYRQSLKLLEXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXSVVGVGFLLGYTCNPS 155
           XXXXXXXXXX          SVVGVGFLLGYTCNPS
Sbjct: 121 XXXXXXXXXXKWVWALAICLSVVGVGFLLGYTCNPS 156

[Close]

BLAST of CsGy4G008640 vs. TrEMBL
Match: tr|A0A2C9URM0|A0A2C9URM0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G097300 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-15
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 11  ALDSRDMV------NRGGVELIRNCDLPPPQKVF-------------------------- 70
           A+D  DM+       + G++L++NCDLPPP KVF                          
Sbjct: 14  AVDENDMLMGALLSQKSGIDLLQNCDLPPPVKVFSGWDTTVISPVNRVFGLMSREEDNTG 73

Query: 71  ---KSGMEEKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLK 103
                G  EK+ELLKALRLSQTRAREAE+KAA L++ERD IS A   E+  +F YRQ L+
Sbjct: 74  FDINGGENEKLELLKALRLSQTRAREAEKKAANLVKERDFISNALLRESMQLFAYRQWLR 133

[Close]

BLAST of CsGy4G008640 vs. TrEMBL
Match: tr|A0A251NST4|A0A251NST4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G193900 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 63/152 (41.45%), Postives = 78/152 (51.32%), Query Frame = 0


Query: 1   MKAGTSN----NQKALDSRDMV----------NRGGVELIRNCDLPPPQKVF-------- 60
           M   TSN    N KA+D  +M+             G++LI+NCDLPPP KVF        
Sbjct: 1   MAGWTSNNPKLNPKAVDGNEMLKGLNLTPVSHKSSGLDLIQNCDLPPPMKVFTGSDNKTV 60

Query: 61  -----------------------------KSGMEEKMELLKALRLSQTRAREAERKAAKL 102
                                          G  EK+ELLKALRLSQTRAREAE+KA KL
Sbjct: 61  LSSMNRACSMSMTQEDDNRDEFDMCGNRGDGGENEKLELLKALRLSQTRAREAEKKAEKL 120

[Close]

BLAST of CsGy4G008640 vs. TrEMBL
Match: tr|A0A2N9EBV0|A0A2N9EBV0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4369 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.0e-14
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 8   NQKALDSRDMV------NRGGVELIRNCDLPPPQKVF----------------------- 67
           N KA D  +MV       + G++L++NCDLPPP KVF                       
Sbjct: 13  NSKAFDGNEMVTGFELSQKPGIDLMQNCDLPPPMKVFTGSDKTVMSSMNRIFGMMGKEDE 72

Query: 68  --------KSGMEEKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCY 102
                     G  EK+ELLKALR SQTRAREAE+KAA L+ E++C+S A  +EA  +F  
Sbjct: 73  NEEFNVYRSGGENEKLELLKALRSSQTRAREAEKKAASLVNEKNCLSNALLEEATRLFAC 132

The following BLAST results are available for this feature:

BLAST of CsGy4G008640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653361.1	8.5e-53	100.00	PREDICTED: uncharacterized protein LOC105435202 [Cucumis sativus]	[more]
KGN53662.1	6.9e-47	100.00	hypothetical protein Csa_4G097690 [Cucumis sativus]	[more]
XP_008455680.1	5.5e-44	83.97	PREDICTED: uncharacterized protein LOC103495794 [Cucumis melo]	[more]
XP_022970087.1	5.9e-30	66.95	uncharacterized protein LOC111469054 [Cucurbita maxima]	[more]
XP_023545135.1	5.9e-30	66.95	uncharacterized protein LOC111804522 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G008640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01240.1	1.2e-05	33.06	unknown protein	[more]
AT2G46550.1	3.0e-04	47.27	unknown protein	[more]

BLAST of CsGy4G008640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G008640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ57\|A0A0A0KZ57_CUCSA	4.6e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097690 PE=4 SV=1	[more]
tr\|A0A1S3C2P7\|A0A1S3C2P7_CUCME	3.6e-44	83.97	uncharacterized protein LOC103495794 OS=Cucumis melo OX=3656 GN=LOC103495794 PE=...	[more]
tr\|A0A2C9URM0\|A0A2C9URM0_MANES	4.6e-15	44.88	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G097300 PE=4 SV=...	[more]
tr\|A0A251NST4\|A0A251NST4_PRUPE	1.3e-14	41.45	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G193900 PE=4 SV=1	[more]
tr\|A0A2N9EBV0\|A0A2N9EBV0_FAGSY	3.0e-14	41.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4369 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G008640.1	CsGy4G008640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..79
None	No IPR available	COILS	Coil	Coil	coord: 94..121
None	No IPR available	PANTHER	PTHR33868:SF3	SUBFAMILY NOT NAMED	coord: 21..39
None	No IPR available	PANTHER	PTHR33868	FAMILY NOT NAMED	coord: 21..39 coord: 43..150
None	No IPR available	PANTHER	PTHR33868:SF3	SUBFAMILY NOT NAMED	coord: 43..150

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G008640	Csa4G097690	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G008640	ClCG10G008400	Watermelon (Charleston Gray)	cgybwcgB255
CsGy4G008640	CSPI04G08820	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G008640	CmoCh04G009010	Cucurbita moschata (Rifu)	cgybcmoB519
CsGy4G008640	Cp4.1LG01g09100	Cucurbita pepo (Zucchini)	cgybcpeB506
CsGy4G008640	CsaV3_4G009020	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G008640	Cla97C10G191860	Watermelon (97103) v2	cgybwmbB263
CsGy4G008640	Carg14242	Silver-seed gourd	carcgybB0929

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G008640	Cucurbita maxima (Rimu)	cgybcmaB496
CsGy4G008640	Cucurbita maxima (Rimu)	cgybcmaB544
CsGy4G008640	Cucurbita moschata (Rifu)	cgybcmoB466
CsGy4G008640	Cucurbita pepo (Zucchini)	cgybcpeB486
CsGy4G008640	Melon (DHL92) v3.5.1	cgybmeB259
CsGy4G008640	Melon (DHL92) v3.5.1	cgybmeB278
CsGy4G008640	Melon (DHL92) v3.6.1	cgybmedB257
CsGy4G008640	Melon (DHL92) v3.6.1	cgybmedB278
CsGy4G008640	Silver-seed gourd	carcgybB1004
CsGy4G008640	Watermelon (97103) v2	cgybwmbB261