CSPI04G08820 (gene) Wild cucumber (PI 183967)

NameCSPI04G08820
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAt1g01240/F6F3_11
LocationChr4 : 6567954 .. 6568748 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCCATATTATAATGTGATTAAAGAAAAGTTGTGAGATGCAATATAAAAAAGGAGTAACAATATTGAAAGGAATTTGAATGAGTGCCTTGAAGCAAAAATAAACCGGAAGTTTGTCTGAAGAAGCAAGCAAAGAATTGTTTGCCAATAAATAAGTTCAGTCAATTTCAATCTTTCTGTATCGATCTTTCCCATACCCATCCACAATCCCTTTCGTTCCAAAATTCGATCGCACTCGACCGGCCATCCGCGAAATCATGAAGGCAGGGACGAGCAACAATCAGAAAGCCCTAGATTCGAGAGACATGGTCCACAGAGGCGGGGTTGAGCTAATTAGGAATTGCGATCTTCCGCCGCCGCAGAAGGTATTCAAGAGTGGGATGGAGGAAAAAATGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCAAGAGAGGCGGAGAGGAAGGCGGCAAAATTGATGGAGGAAAGGGATTGTATTAGTAGGGCTTTTGAAGACGAGGCCAGAATGGTGTTCTGTTATCGACAATCCCTCAAATTGCTGGAGCTCAGGGTTTTCAAGTTGCAGAAACAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAAGTGAAAAGAATGGTGGAAATGGAGGAATGAAATGGGTTTGGGCTTTGGCTATTTGTTTGAGTGTTGTTGGAGTTGGCTTTCTTTTGGGCTATACATGTAATCCTTCATGAACCATACATTATTACCTTTTTACCCCCTACATCTTTTACCCAATTTTACTCTTTTACTTTCTTAAATAAGAGTA

mRNA sequence

ATGAAGGCAGGGACGAGCAACAATCAGAAAGCCCTAGATTCGAGAGACATGGTCCACAGAGGCGGGGTTGAGCTAATTAGGAATTGCGATCTTCCGCCGCCGCAGAAGGTATTCAAGAGTGGGATGGAGGAAAAAATGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCAAGAGAGGCGGAGAGGAAGGCGGCAAAATTGATGGAGGAAAGGGATTGTATTAGTAGGGCTTTTGAAGACGAGGCCAGAATGGTGTTCTGTTATCGACAATCCCTCAAATTGCTGGAGCTCAGGGTTTTCAAGTTGCAGAAACAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAAGTGAAAAGAATGGTGGAAATGGAGGAATGAAATGGGTTTGGGCTTTGGCTATTTGTTTGAGTGTTGTTGGAGTTGGCTTTCTTTTGGGCTATACATGTAATCCTTCATGA

Coding sequence (CDS)

ATGAAGGCAGGGACGAGCAACAATCAGAAAGCCCTAGATTCGAGAGACATGGTCCACAGAGGCGGGGTTGAGCTAATTAGGAATTGCGATCTTCCGCCGCCGCAGAAGGTATTCAAGAGTGGGATGGAGGAAAAAATGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCAAGAGAGGCGGAGAGGAAGGCGGCAAAATTGATGGAGGAAAGGGATTGTATTAGTAGGGCTTTTGAAGACGAGGCCAGAATGGTGTTCTGTTATCGACAATCCCTCAAATTGCTGGAGCTCAGGGTTTTCAAGTTGCAGAAACAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAAAGTGAAAAGAATGGTGGAAATGGAGGAATGAAATGGGTTTGGGCTTTGGCTATTTGTTTGAGTGTTGTTGGAGTTGGCTTTCTTTTGGGCTATACATGTAATCCTTCATGA
BLAST of CSPI04G08820 vs. TrEMBL
Match: A0A0A0KZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097690 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1

Query: 1   MKAGTSNNQKALDSRDMVHRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKAGTSNNQKALDSRDMV+RGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR
Sbjct: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEESE 120
           EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEE E
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEEEE 120

Query: 121 K 122
           +
Sbjct: 121 E 121

BLAST of CSPI04G08820 vs. TrEMBL
Match: W9S4F0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019809 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 1

Query: 22  GVELIRNCDLPPPQKVFKSG------------------------------MEEKMELLKA 81
           G++L++NCDLPPP KVF                                   EK+ELLKA
Sbjct: 13  GMDLMQNCDLPPPMKVFTRSDRKTVLPSMNRAFGLMGTREGESQSKFDGENHEKLELLKA 72

Query: 82  LRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEE 141
           LR SQTRAREAE+KA  L +ERDC+S A  +EA+ +F +RQ ++LLEL+V  L  +  E+
Sbjct: 73  LRFSQTRAREAEKKAEVLAKERDCLSNAVFEEAKQLFGHRQLVRLLELQVSSLYSKWAEK 132

Query: 142 E-----EEEEEESEKNGGNGGMKWVWALAICLSVVGVGF 146
           E      +++++ E +       WV ALA C  + GVGF
Sbjct: 133 ERKGINRDDDDDGEDDDDGVCFTWVVALAFCFGIAGVGF 171

BLAST of CSPI04G08820 vs. TrEMBL
Match: A0A0D2RGF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G041700 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 67/165 (40.61%), Postives = 91/165 (55.15%), Query Frame = 1

Query: 20  RGGVELIRNCDLPPPQKVFKS-------------------GMEE------KMELLKALRL 79
           + G++L++NCDLPPP KVF                     G E+      K+E+ KALRL
Sbjct: 38  KSGIDLMQNCDLPPPLKVFAGLDKAVELMSLNNRAGYSIIGQEDDKNDDGKLEIFKALRL 97

Query: 80  SQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQ------- 139
           SQTRAREAERKAA L EE+  +S AF  E+  +F YRQ ++LLE++V+ L+ Q       
Sbjct: 98  SQTRAREAERKAADLAEEKQRVSDAFMKESLQLFAYRQWVRLLEIQVWVLKSQMVEKDKN 157

Query: 140 --EEEEEEEEEEESEKNGGNGG--MKWVWALAICLSVVGVGFLLG 149
             ++ E +   EE  + G N G  M  + ALAICL +  VG   G
Sbjct: 158 FCDKTERQRVVEEGIEGGNNNGDEMSLIVALAICLGIASVGLAFG 202

BLAST of CSPI04G08820 vs. TrEMBL
Match: A0A022QWT4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021695mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 60/147 (40.82%), Postives = 92/147 (62.59%), Query Frame = 1

Query: 20  RGGVELIRNCDLPPPQKVFKSGMEE-------KMELLKALRLSQTRAREAERKAAKLMEE 79
           +  + L++NCDLPPP K+F    E        ++E+LKAL LSQTRAREAERK   L++E
Sbjct: 32  KSALGLMQNCDLPPPVKLFSGPNETLLSKEKGELEILKALTLSQTRAREAERKLRTLIKE 91

Query: 80  RDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEE---------EEEESEKNG 139
           +D +SR   D++  +F YRQ ++LLEL +   ++Q++++E++         EEE  EK+G
Sbjct: 92  KDELSRMLVDDSLRLFAYRQWVRLLELELNLQRRQQQKKEDDVMNYADESKEEENYEKDG 151

Query: 140 -GNGGMKWVWALAICLSVVGVGFLLGY 150
             +   +W  A+ +CL+  G GF LGY
Sbjct: 152 IISTKNQWCTAIGLCLAFAGFGFALGY 178

BLAST of CSPI04G08820 vs. TrEMBL
Match: A0A0J8EZE7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138760 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-16
Identity = 67/184 (36.41%), Postives = 97/184 (52.72%), Query Frame = 1

Query: 8   NQKALDSRDMVHR-------GGVELIRNCDLPPPQKVFKSGMEE---------------- 67
           N K  D  D++ R       G  +LI+NCDLPPP KV  SG+ +                
Sbjct: 14  NIKGFDENDLMMRVMLSQKPGHNDLIQNCDLPPPTKVI-SGLSDNVTVISPMNRKKIHNF 73

Query: 68  -------------KMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYR 127
                        K+ LLKALRLSQTRAREAE K   +++ERD +  AF  ++  +F YR
Sbjct: 74  VGDHHHVKDDGNTKLGLLKALRLSQTRAREAEAKYQAIIKERDALGYAFVQDSMQIFAYR 133

Query: 128 QSLKLLELRV--FKLQKQEEEE-----EEEEEEESEKNGGNGGMKWVWALAICLSVVGVG 149
           Q ++LLE +V  F+ QKQ+++E     + +  EE +   G+ G+  +  +A CL + GVG
Sbjct: 134 QFVRLLEFQVSQFEQQKQQQQELYDCGKRKHGEEGDDGSGSNGLTLLITMAFCLGIAGVG 193

BLAST of CSPI04G08820 vs. TAIR10
Match: AT1G01240.1 (AT1G01240.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-11
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 1

Query: 15  RDMVHRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAREAERKAAKLMEERD 74
           R + + G  E      +  P    +S    K +LL+ALR SQTRAREAER A +   E+D
Sbjct: 184 RSLSYNGSTESKNTSPMSSP----RSDDLSKGQLLEALRHSQTRAREAERAAREACAEKD 243

Query: 75  CISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEE-----------ESEKNG 134
            +      +A  +  Y+Q LKLLE+    LQ ++EEE+EE+ +           E +K G
Sbjct: 244 RVITILLKQASQMLAYKQWLKLLEMEALYLQMKKEEEQEEQVKGMNLKKRKQRGEKKKKG 303

Query: 135 GNGGMKWVWALAICLSVVGVGFLLGYT 151
             G  +++ A A+  S++G G LLG+T
Sbjct: 304 ETG--RYMMAFALGFSLIGAGLLLGWT 324

BLAST of CSPI04G08820 vs. TAIR10
Match: AT2G46550.1 (AT2G46550.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 1

Query: 45  KMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKL 104
           K ELL+ALR SQTRAREAE  A +   E++ + +    +A  +F Y+Q L+LL+L    L
Sbjct: 263 KSELLEALRRSQTRAREAENMAKEAYAEKEHLVKILLKQAAELFGYKQWLQLLQLEALYL 322

Query: 105 QKQEEE--------------------EEEEEEEESEKNGGNGGMKWVWALAICLSVVGVG 151
           Q + +E                      +E  +   K G   G K+   LA+ +S+VG G
Sbjct: 323 QIKNKEIDNKNNDDPGVSIPCWSNGKARKEGRKRRSKRGKPNGAKYAVGLALGMSLVGAG 382

BLAST of CSPI04G08820 vs. NCBI nr
Match: gi|778691835|ref|XP_011653361.1| (PREDICTED: uncharacterized protein LOC105435202 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 9.7e-77
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 1

Query: 1   MKAGTSNNQKALDSRDMVHRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKAGTSNNQKALDSRDMV+RGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR
Sbjct: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEESE 120
           EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEES+
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEESD 120

Query: 121 KNGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS 155
           KNGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS
Sbjct: 121 KNGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS 154

BLAST of CSPI04G08820 vs. NCBI nr
Match: gi|659111298|ref|XP_008455680.1| (PREDICTED: uncharacterized protein LOC103495794 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 2.2e-68
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 1

Query: 1   MKAGTSNNQKALDSRDMVHRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKA TSNN+++LDSRDMV R GVELIRNCDLPPPQKVFKSGMEEK+ELLKALRLSQTRAR
Sbjct: 1   MKAATSNNRQSLDSRDMVQRDGVELIRNCDLPPPQKVFKSGMEEKIELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQ--EEEEEEEEEEE 120
           EAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKLLELRV KLQKQ  EE EEEEEEEE
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARLMFCYRQSLKLLELRVCKLQKQEVEEVEEEEEEEE 120

Query: 121 SEKNGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS 155
            ++NGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS
Sbjct: 121 RDENGGNGGMKWVWALAICLSVVGVGFLLGYTCNPS 156

BLAST of CSPI04G08820 vs. NCBI nr
Match: gi|700198504|gb|KGN53662.1| (hypothetical protein Csa_4G097690 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-54
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1

Query: 1   MKAGTSNNQKALDSRDMVHRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60
           MKAGTSNNQKALDSRDMV+RGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR
Sbjct: 1   MKAGTSNNQKALDSRDMVNRGGVELIRNCDLPPPQKVFKSGMEEKMELLKALRLSQTRAR 60

Query: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEESE 120
           EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEE E
Sbjct: 61  EAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFKLQKQEEEEEEEEEEEEE 120

Query: 121 K 122
           +
Sbjct: 121 E 121

BLAST of CSPI04G08820 vs. NCBI nr
Match: gi|720054209|ref|XP_010272975.1| (PREDICTED: uncharacterized protein LOC104608632 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 69/189 (36.51%), Postives = 105/189 (55.56%), Query Frame = 1

Query: 4   GTSNNQKALDSRDMV------HRGGVELIRNCDLPPPQKVFKS----------------- 63
           G S N    + ++MV      H+  ++L++NCDLPPP KVF +                 
Sbjct: 44  GDSQNCYMTEEKEMVMGLVHSHKSCLDLVQNCDLPPPIKVFAAIDRTFASPKISREYRED 103

Query: 64  -------GMEEKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQS 123
                  G +EK+ LLKAL LSQTRAREAE KAA + +ERDC+S +  +E+  +F +RQ 
Sbjct: 104 SPTLPCAGQDEKLGLLKALHLSQTRAREAEEKAALMAKERDCLSNSLLEESLQLFAHRQW 163

Query: 124 LKLLELRVFKLQKQEEEEEEEE-------------EEESEKNGGNGGMKWVWALAICLSV 150
           +KLLE+ V +L+ Q+++++++               +E ++ G  G + W  A A+CL +
Sbjct: 164 VKLLEIEVSRLRSQKQQQQKQSCSGCCQSDTEQGATKEEKEEGDVGSLTWYMAFALCLGI 223

BLAST of CSPI04G08820 vs. NCBI nr
Match: gi|720054206|ref|XP_010272974.1| (PREDICTED: uncharacterized protein LOC104608632 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 105.5 bits (262), Expect = 8.3e-20
Identity = 69/200 (34.50%), Postives = 105/200 (52.50%), Query Frame = 1

Query: 4   GTSNNQKALDSRDMV------HRGGVELIRNCDLPPPQKVFKS----------------- 63
           G S N    + ++MV      H+  ++L++NCDLPPP KVF +                 
Sbjct: 44  GDSQNCYMTEEKEMVMGLVHSHKSCLDLVQNCDLPPPIKVFAAIDRTFASPYVSMTFQRF 103

Query: 64  ------------------GMEEKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFED 123
                             G +EK+ LLKAL LSQTRAREAE KAA + +ERDC+S +  +
Sbjct: 104 QGKISREYREDSPTLPCAGQDEKLGLLKALHLSQTRAREAEEKAALMAKERDCLSNSLLE 163

Query: 124 EARMVFCYRQSLKLLELRVFKLQKQEEEEEEEE-------------EEESEKNGGNGGMK 150
           E+  +F +RQ +KLLE+ V +L+ Q+++++++               +E ++ G  G + 
Sbjct: 164 ESLQLFAHRQWVKLLEIEVSRLRSQKQQQQKQSCSGCCQSDTEQGATKEEKEEGDVGSLT 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZ57_CUCSA2.1e-5497.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097690 PE=4 SV=1[more]
W9S4F0_9ROSA1.0e-1639.62Uncharacterized protein OS=Morus notabilis GN=L484_019809 PE=4 SV=1[more]
A0A0D2RGF6_GOSRA1.3e-1640.61Uncharacterized protein OS=Gossypium raimondii GN=B456_003G041700 PE=4 SV=1[more]
A0A022QWT4_ERYGU3.9e-1640.82Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021695mg PE=4 SV=1[more]
A0A0J8EZE7_BETVU5.1e-1636.41Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138760 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G01240.13.4e-1135.37 unknown protein[more]
AT2G46550.11.7e-0734.92 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778691835|ref|XP_011653361.1|9.7e-7798.70PREDICTED: uncharacterized protein LOC105435202 [Cucumis sativus][more]
gi|659111298|ref|XP_008455680.1|2.2e-6889.74PREDICTED: uncharacterized protein LOC103495794 [Cucumis melo][more]
gi|700198504|gb|KGN53662.1|3.0e-5497.52hypothetical protein Csa_4G097690 [Cucumis sativus][more]
gi|720054209|ref|XP_010272975.1|4.4e-2136.51PREDICTED: uncharacterized protein LOC104608632 isoform X2 [Nelumbo nucifera][more]
gi|720054206|ref|XP_010272974.1|8.3e-2034.50PREDICTED: uncharacterized protein LOC104608632 isoform X1 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08820.1CSPI04G08820.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 45..79
score: -coord: 94..122
scor
NoneNo IPR availablePANTHERPTHR33868FAMILY NOT NAMEDcoord: 43..148
score: 2.2
NoneNo IPR availablePANTHERPTHR33868:SF3SUBFAMILY NOT NAMEDcoord: 43..148
score: 2.2