CmoCh04G009010 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G009010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 4540135 .. 4540671 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGTCCACCATCGCCGGCTGGCTGAACAATTACAACAACCTCAAATCTAATCCCGAAGCCCTAGATTCCACCGACATGCTCCTCGAATTTCCCTACAAGCCCTGCGTTGACCTAATTCGGAATTGCGATCTTCCGCCGCCGCAGAAGTTATTCACGGCCTCCGACAAGGGGGCGATGGCGGCTAGAGGTAGAGGTCGGGAAGAAGTGGAAACAGGGGGGATGGAGGAGAAATTGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCGAGAGAGGCGGAGAGAAAGGCGGCGAAATTGATGGAGGAAAGGGATTGTATAAGTAGGGCTTTTGAAGATGAGGCGAGATTGATCTTCTGTTACCGACAGTCGCTGAAATTGATGGAGCTCAGAGTTTCCAAGTTGAAGAAGAGGAAAGAAGAAGAAGAAGACAATGGCAATGGCAATCGAGGAGTGAAATGGGTTTGGGCTTTGGCAATCTGCTTGAGTGCTGTGGGAGTCGGCATTCTCTTGGGCTATACTGCTTGA

mRNA sequence

ATGAAGCAGTCCACCATCGCCGGCTGGCTGAACAATTACAACAACCTCAAATCTAATCCCGAAGCCCTAGATTCCACCGACATGCTCCTCGAATTTCCCTACAAGCCCTGCGTTGACCTAATTCGGAATTGCGATCTTCCGCCGCCGCAGAAGTTATTCACGGCCTCCGACAAGGGGGCGATGGCGGCTAGAGGTAGAGGTCGGGAAGAAGTGGAAACAGGGGGGATGGAGGAGAAATTGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCGAGAGAGGCGGAGAGAAAGGCGGCGAAATTGATGGAGGAAAGGGATTGTATAAGTAGGGCTTTTGAAGATGAGGCGAGATTGATCTTCTGTTACCGACAGTCGCTGAAATTGATGGAGCTCAGAGTTTCCAAGTTGAAGAAGAGGAAAGAAGAAGAAGAAGACAATGGCAATGGCAATCGAGGAGTGAAATGGGTTTGGGCTTTGGCAATCTGCTTGAGTGCTGTGGGAGTCGGCATTCTCTTGGGCTATACTGCTTGA

Coding sequence (CDS)

ATGAAGCAGTCCACCATCGCCGGCTGGCTGAACAATTACAACAACCTCAAATCTAATCCCGAAGCCCTAGATTCCACCGACATGCTCCTCGAATTTCCCTACAAGCCCTGCGTTGACCTAATTCGGAATTGCGATCTTCCGCCGCCGCAGAAGTTATTCACGGCCTCCGACAAGGGGGCGATGGCGGCTAGAGGTAGAGGTCGGGAAGAAGTGGAAACAGGGGGGATGGAGGAGAAATTGGAGCTGTTGAAGGCTCTGAGACTGTCGCAAACGAGGGCGAGAGAGGCGGAGAGAAAGGCGGCGAAATTGATGGAGGAAAGGGATTGTATAAGTAGGGCTTTTGAAGATGAGGCGAGATTGATCTTCTGTTACCGACAGTCGCTGAAATTGATGGAGCTCAGAGTTTCCAAGTTGAAGAAGAGGAAAGAAGAAGAAGAAGACAATGGCAATGGCAATCGAGGAGTGAAATGGGTTTGGGCTTTGGCAATCTGCTTGAGTGCTGTGGGAGTCGGCATTCTCTTGGGCTATACTGCTTGA
BLAST of CmoCh04G009010 vs. TrEMBL
Match: A0A0A0KZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097690 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 1

Query: 18  SNPEALDSTDMLLEFPYKPCVDLIRNCDLPPPQKLFTASDKGAMAARGRGREEVETGGME 77
           +N +ALDS DM+     +  V+LIRNCDLPPPQK+F +                   GME
Sbjct: 7   NNQKALDSRDMV----NRGGVELIRNCDLPPPQKVFKS-------------------GME 66

Query: 78  EKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRVSK 137
           EK+ELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKL+ELRV K
Sbjct: 67  EKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFK 113

Query: 138 LKKRKEEEED 148
           L+K++EEEE+
Sbjct: 127 LQKQEEEEEE 113

BLAST of CmoCh04G009010 vs. TrEMBL
Match: B9T781_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0338110 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-27
Identity = 86/210 (40.95%), Postives = 116/210 (55.24%), Query Frame = 1

Query: 6   IAGWLNNYNNLKSNPEALDSTDMLLE--FPYKPCVDLIRNCDLPPPQKLFTASDKGAMAA 65
           +AGW  + NN K NP ALD  D+L+      K  +DL++NCDLPPP K+F+ SD+   ++
Sbjct: 1   MAGWAASNNNKKLNPGALDENDILMGALLARKSSIDLLQNCDLPPPLKVFSGSDRTIRSS 60

Query: 66  RGR-----GREEVET---------GGMEEKLELLKALRLSQTRAREAERKAAKLMEERDC 125
             R     G+EE            GG   KLE+LKALRLSQTRAREAE+KAA L +E DC
Sbjct: 61  MNRVFSMMGKEEENNEFDIHGSVGGGENGKLEILKALRLSQTRAREAEKKAASLAKENDC 120

Query: 126 ISRAFEDEARLIFCYRQSLKLMELRVSKL----------------------KKRKEEEED 176
           IS A   E+  +F YRQ ++L+E++V KL                      KK  ++ ED
Sbjct: 121 ISNALLRESMQLFAYRQWVRLLEVQVMKLQSEGKHQGNRWCCSCGGRLEGVKKLLKDGED 180

BLAST of CmoCh04G009010 vs. TrEMBL
Match: A0A067K0L4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18666 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 77/182 (42.31%), Postives = 106/182 (58.24%), Query Frame = 1

Query: 6   IAGWLNNYNNLKSNPEALDSTDMLLEFPYKPCV--DLIRNCDLPPPQKLFTASDKGAMAA 65
           +A W ++ N+  S     D  DM +     P    DL++NCDLP P K+F+  DK  ++ 
Sbjct: 1   MARWASSNNHKLSYRGFDDENDMFMGVLVSPKSGKDLMQNCDLPTPLKMFSGCDKTVISP 60

Query: 66  RGRGRE--------EVETGGMEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFE 125
               RE        +V+ GG  EKLELLKALRLSQTRAREAE KAA L ++RD I+    
Sbjct: 61  MTVKREKEEERSDFDVKCGGENEKLELLKALRLSQTRAREAEEKAANLAKDRDSITNVLL 120

Query: 126 DEARLIFCYRQSLKLMELRVSKLKKRKEE--EEDNGNGNRGVKWVWALAICLSAVGVGIL 176
            E+  +F YRQ ++L+E +V KL+ +K++   E   +G+ GV W  ALA CL   GVG+ 
Sbjct: 121 KESMQLFAYRQWVRLLEFQVLKLQSQKKKLLNEGGADGDDGVSWFMALAFCLGIAGVGLA 180

BLAST of CmoCh04G009010 vs. TrEMBL
Match: A0A061DPX5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_001035 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 82/208 (39.42%), Postives = 112/208 (53.85%), Query Frame = 1

Query: 1   MKQSTIAGWLNNYNNLKSNPEALDSTDMLLE--FPYKPCVDLIRNCDLPPPQKLFTASDK 60
           M+ S IA  + N+  L  N       DM+L      K  +DL++NCDLPPP K+FT  DK
Sbjct: 1   MEPSAIARQVQNHQKL--NSRVAKENDMMLGTLISQKSGIDLMQNCDLPPPLKVFTGLDK 60

Query: 61  GAMAARGR----GREE---------VETGGMEEKLELLKALRLSQTRAREAERKAAKLME 120
               +  R    GRE              G ++KLELLKALRLSQTRAREAE+KAA L +
Sbjct: 61  AVALSMNRVCSTGRETDKDDHELLVFRNEGEDDKLELLKALRLSQTRAREAEKKAAGLAK 120

Query: 121 ERDCISRAFEDEARLIFCYRQSLKLMELRVSKLKKRKEEEE-----------------DN 177
           ER+ IS AF  ++  +F YRQ ++L+E++VSKL+ +  ++E                 + 
Sbjct: 121 ERERISNAFVKDSLQLFAYRQWVRLLEIQVSKLQSQLLKQERHCCDKPEGKSLLPEGNEG 180

BLAST of CmoCh04G009010 vs. TrEMBL
Match: W9S4F0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019809 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 1

Query: 38  VDLIRNCDLPPPQKLFTASDK-----------GAMAARGRGREEVETGGMEEKLELLKAL 97
           +DL++NCDLPPP K+FT SD+           G M  R    +    G   EKLELLKAL
Sbjct: 14  MDLMQNCDLPPPMKVFTRSDRKTVLPSMNRAFGLMGTREGESQSKFDGENHEKLELLKAL 73

Query: 98  RLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRVSKL------KK 157
           R SQTRAREAE+KA  L +ERDC+S A  +EA+ +F +RQ ++L+EL+VS L      K+
Sbjct: 74  RFSQTRAREAEKKAEVLAKERDCLSNAVFEEAKQLFGHRQLVRLLELQVSSLYSKWAEKE 133

Query: 158 RK----EEEEDNGNGNRGV--KWVWALAICLSAVGVG 172
           RK    ++++D  + + GV   WV ALA C    GVG
Sbjct: 134 RKGINRDDDDDGEDDDDGVCFTWVVALAFCFGIAGVG 170

BLAST of CmoCh04G009010 vs. TAIR10
Match: AT1G01240.1 (AT1G01240.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 63/202 (31.19%), Postives = 89/202 (44.06%), Query Frame = 1

Query: 24  DSTDMLLEFPYKPCVDLIRNCDLPPPQKLF-----TASDKGAMAA----------RGRGR 83
           D  ++ L    K     I+NCDLPPPQKL      ++ +KG   A          + R  
Sbjct: 124 DKDELALMVATKSVDHNIQNCDLPPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFE 183

Query: 84  EEVETGGMEE----------------KLELLKALRLSQTRAREAERKAAKLMEERDCISR 143
             +   G  E                K +LL+ALR SQTRAREAER A +   E+D +  
Sbjct: 184 RSLSYNGSTESKNTSPMSSPRSDDLSKGQLLEALRHSQTRAREAERAAREACAEKDRVIT 243

Query: 144 AFEDEARLIFCYRQSLKLMELRV-----------------SKLKKRKEEEEDNGNGNRGV 178
               +A  +  Y+Q LKL+E+                     LKKRK+  E    G  G 
Sbjct: 244 ILLKQASQMLAYKQWLKLLEMEALYLQMKKEEEQEEQVKGMNLKKRKQRGEKKKKGETG- 303

BLAST of CmoCh04G009010 vs. TAIR10
Match: AT2G46550.1 (AT2G46550.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-07
Identity = 43/139 (30.94%), Postives = 68/139 (48.92%), Query Frame = 1

Query: 66  RGREEVETGGMEEKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYR 125
           + R E  +     K ELL+ALR SQTRAREAE  A +   E++ + +    +A  +F Y+
Sbjct: 250 KNRPEASSESDLSKSELLEALRRSQTRAREAENMAKEAYAEKEHLVKILLKQAAELFGYK 309

Query: 126 QSLKLMELRVSKLKKRKEEEEDNGNGNRGV---------------------------KWV 178
           Q L+L++L    L+ + +E ++  N + GV                           K+ 
Sbjct: 310 QWLQLLQLEALYLQIKNKEIDNKNNDDPGVSIPCWSNGKARKEGRKRRSKRGKPNGAKYA 369

BLAST of CmoCh04G009010 vs. NCBI nr
Match: gi|778691835|ref|XP_011653361.1| (PREDICTED: uncharacterized protein LOC105435202 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46
Identity = 109/167 (65.27%), Postives = 124/167 (74.25%), Query Frame = 1

Query: 18  SNPEALDSTDMLLEFPYKPCVDLIRNCDLPPPQKLFTASDKGAMAARGRGREEVETGGME 77
           +N +ALDS DM+     +  V+LIRNCDLPPPQK+F +                   GME
Sbjct: 7   NNQKALDSRDMV----NRGGVELIRNCDLPPPQKVFKS-------------------GME 66

Query: 78  EKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRVSK 137
           EK+ELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKL+ELRV K
Sbjct: 67  EKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFK 126

Query: 138 LKKRKEEEE-------DNGNGNRGVKWVWALAICLSAVGVGILLGYT 178
           L+K++EEEE       D   GN G+KWVWALAICLS VGVG LLGYT
Sbjct: 127 LQKQEEEEEEEEEEESDKNGGNGGMKWVWALAICLSVVGVGFLLGYT 150

BLAST of CmoCh04G009010 vs. NCBI nr
Match: gi|659111298|ref|XP_008455680.1| (PREDICTED: uncharacterized protein LOC103495794 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 108/169 (63.91%), Postives = 123/169 (72.78%), Query Frame = 1

Query: 18  SNPEALDSTDMLLEFPYKPCVDLIRNCDLPPPQKLFTASDKGAMAARGRGREEVETGGME 77
           +N ++LDS DM+     +  V+LIRNCDLPPPQK+F +                   GME
Sbjct: 7   NNRQSLDSRDMV----QRDGVELIRNCDLPPPQKVFKS-------------------GME 66

Query: 78  EKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRVSK 137
           EK+ELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARL+FCYRQSLKL+ELRV K
Sbjct: 67  EKIELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLMFCYRQSLKLLELRVCK 126

Query: 138 LKKR---------KEEEEDNGNGNRGVKWVWALAICLSAVGVGILLGYT 178
           L+K+         +EEE D   GN G+KWVWALAICLS VGVG LLGYT
Sbjct: 127 LQKQEVEEVEEEEEEEERDENGGNGGMKWVWALAICLSVVGVGFLLGYT 152

BLAST of CmoCh04G009010 vs. NCBI nr
Match: gi|700198504|gb|KGN53662.1| (hypothetical protein Csa_4G097690 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-33
Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 1

Query: 18  SNPEALDSTDMLLEFPYKPCVDLIRNCDLPPPQKLFTASDKGAMAARGRGREEVETGGME 77
           +N +ALDS DM+     +  V+LIRNCDLPPPQK+F +                   GME
Sbjct: 7   NNQKALDSRDMV----NRGGVELIRNCDLPPPQKVFKS-------------------GME 66

Query: 78  EKLELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARLIFCYRQSLKLMELRVSK 137
           EK+ELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEAR++FCYRQSLKL+ELRV K
Sbjct: 67  EKMELLKALRLSQTRAREAERKAAKLMEERDCISRAFEDEARMVFCYRQSLKLLELRVFK 113

Query: 138 LKKRKEEEED 148
           L+K++EEEE+
Sbjct: 127 LQKQEEEEEE 113

BLAST of CmoCh04G009010 vs. NCBI nr
Match: gi|645219327|ref|XP_008235197.1| (PREDICTED: uncharacterized protein LOC103334047 [Prunus mume])

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 90/216 (41.67%), Postives = 117/216 (54.17%), Query Frame = 1

Query: 5   TIAGWLNNYNNLKSNPEALDSTDMLLEFPYKPC------VDLIRNCDLPPPQKLFTASDK 64
           ++AGW +N  N K  P+A+D  +ML      P       +DLI+NCDLPPP K FT SD 
Sbjct: 7   SMAGWTSN--NPKLTPKAVDGNEMLKGLNLTPVSHKSSGLDLIQNCDLPPPMKFFTGSDN 66

Query: 65  G------------AMAARGRGREEVET------GGMEEKLELLKALRLSQTRAREAERKA 124
                        +M      R+E +       GG  EKLELLKALRLSQTRAREAE+KA
Sbjct: 67  KTVLSSMNRACSMSMTQEDDNRDEFDMCGNRGDGGENEKLELLKALRLSQTRAREAEKKA 126

Query: 125 AKLMEERDCISRAFEDEARLIFCYRQSLKLMELRVSKLKKR--KEEEE------------ 176
            KL +E+DC+S A   EAR +F YRQ ++L+EL+VSKL+ +  ++EEE            
Sbjct: 127 EKLGKEKDCLSDALLAEARELFAYRQWVRLLELKVSKLESQWAQQEEEGSFWGGRSKGLE 186

BLAST of CmoCh04G009010 vs. NCBI nr
Match: gi|255587017|ref|XP_002534100.1| (PREDICTED: uncharacterized protein LOC8278149 [Ricinus communis])

HSP 1 Score: 129.8 bits (325), Expect = 4.7e-27
Identity = 86/210 (40.95%), Postives = 116/210 (55.24%), Query Frame = 1

Query: 6   IAGWLNNYNNLKSNPEALDSTDMLLE--FPYKPCVDLIRNCDLPPPQKLFTASDKGAMAA 65
           +AGW  + NN K NP ALD  D+L+      K  +DL++NCDLPPP K+F+ SD+   ++
Sbjct: 1   MAGWAASNNNKKLNPGALDENDILMGALLARKSSIDLLQNCDLPPPLKVFSGSDRTIRSS 60

Query: 66  RGR-----GREEVET---------GGMEEKLELLKALRLSQTRAREAERKAAKLMEERDC 125
             R     G+EE            GG   KLE+LKALRLSQTRAREAE+KAA L +E DC
Sbjct: 61  MNRVFSMMGKEEENNEFDIHGSVGGGENGKLEILKALRLSQTRAREAEKKAASLAKENDC 120

Query: 126 ISRAFEDEARLIFCYRQSLKLMELRVSKL----------------------KKRKEEEED 176
           IS A   E+  +F YRQ ++L+E++V KL                      KK  ++ ED
Sbjct: 121 ISNALLRESMQLFAYRQWVRLLEVQVMKLQSEGKHQGNRWCCSCGGRLEGVKKLLKDGED 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZ57_CUCSA1.8e-3365.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097690 PE=4 SV=1[more]
B9T781_RICCO3.3e-2740.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0338110 PE=4 SV=1[more]
A0A067K0L4_JATCU1.5e-2442.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18666 PE=4 SV=1[more]
A0A061DPX5_THECC2.9e-2339.42Uncharacterized protein OS=Theobroma cacao GN=TCM_001035 PE=4 SV=1[more]
W9S4F0_9ROSA1.2e-2145.86Uncharacterized protein OS=Morus notabilis GN=L484_019809 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G01240.12.7e-1231.19 unknown protein[more]
AT2G46550.12.0e-0730.94 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778691835|ref|XP_011653361.1|3.5e-4665.27PREDICTED: uncharacterized protein LOC105435202 [Cucumis sativus][more]
gi|659111298|ref|XP_008455680.1|2.3e-4563.91PREDICTED: uncharacterized protein LOC103495794 [Cucumis melo][more]
gi|700198504|gb|KGN53662.1|2.6e-3365.38hypothetical protein Csa_4G097690 [Cucumis sativus][more]
gi|645219327|ref|XP_008235197.1|2.5e-2841.67PREDICTED: uncharacterized protein LOC103334047 [Prunus mume][more]
gi|255587017|ref|XP_002534100.1|4.7e-2740.95PREDICTED: uncharacterized protein LOC8278149 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G009010.1CmoCh04G009010.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 128..148
score: -coord: 86..113
scor
NoneNo IPR availablePANTHERPTHR33868FAMILY NOT NAMEDcoord: 1..163
score: 1.9
NoneNo IPR availablePANTHERPTHR33868:SF3SUBFAMILY NOT NAMEDcoord: 1..163
score: 1.9

The following gene(s) are paralogous to this gene:

None