CsGy3G019690 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G019690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 15857146 .. 15858091 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCAGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATATCCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAAACTTTTCATTTTTAACTCGAGCCCCCACGTGATCACCTTTGCCATTGTTTTCACACCCTACCTTTAATATTGTCACTTTCCAAGATGGGCCCACAAACCTTCAAAGAGCCATTACCCATTTCACCAACTTATATAGCCCGACCCATTTTGCCTCAGATTTTGAAACTTGCCTTACTAGCCCAAATCCCGATTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTATTGAAGCTCATCAACTCTTTTCGATTCTTTCACCTATTCCCGAAGATCTTAATAGGTTAGTTCATAGTTCTCCAACTCCACTAACGTCAACTTCCTCACAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTAAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAATATTATGGTTTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACACACTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATAAT

mRNA sequence

ATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCAGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATATCCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATCCCGACCCATTTTGCCTCAGATTTTGAAACTTGCCTTACTAGCCCAAATCCCGATTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTATTGAAGCTCATCAACTCTTTTCGATTCTTTCACCTATTCCCGAAGATCTTAATAGGTTATTCTCCAACTCCACTAACGTCAACTTCCTCACAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTAAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAATATTATGGTTTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACACACTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATAAT

Coding sequence (CDS)

ATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCAGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATATCCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATCCCGACCCATTTTGCCTCAGATTTTGAAACTTGCCTTACTAGCCCAAATCCCGATTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTATTGAAGCTCATCAACTCTTTTCGATTCTTTCACCTATTCCCGAAGATCTTAATAGGTTATTCTCCAACTCCACTAACGTCAACTTCCTCACAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTAAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAATATTATGGTTTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACACACTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATAAT

Protein sequence

MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLIPTHFASDFETCLTSPNPDFETQSLDVAIFGEDPIEAHQLFSILSPIPEDLNRLFSNSTNVNFLTNNKCSTSSSKLLKPSRFAAILAPHGLNIMVFLLFPGQKNKRMASTASKHTKLQRELQNLHCSINYDKSATLAISEGDN
Homology
[Close]
BLAST of CsGy3G019690 vs. NCBI nr
Match: KGN57667.1 (hypothetical protein Csa_3G239310 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 9.2e-49
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPA 60
           MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPA
Sbjct: 70  MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPA 129

Query: 61  TSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLI 109
           TSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTL+
Sbjct: 130 TSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLM 177

[Close]
BLAST of CsGy3G019690 vs. NCBI nr
Match: KGN65042.1 (hypothetical protein Csa_1G181550 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 0 

Query: 118 TCLTSPNPDFETQSLDVAIFGEDPI-EAHQL---FSILSPIPEDLNR-LFSNSTNVNFL- 177
           T LT+P        +  +I    P+ ++HQ     +IL PI EDL   + ++S +   L 
Sbjct: 11  TTLTAPITQTINPPIYKSIVQTKPVHQSHQSQLPLAILPPISEDLTHPIHTSSEHQQSLH 70

Query: 178 -TNNKCSTSSSKLLKPSRFAAILAPHGLNIMVFLLFPGQKNKRMASTASKHTKLQRELQN 237
              N  + S+  ++     A++LA HGL    F LF  QK  +  ST  K  K+QRELQN
Sbjct: 71  PNPNNQTASTQPIIPLPDLASLLAQHGLCTWAFPLFLLQKLLKDLSTTIKRNKMQRELQN 130

Query: 238 LHCSINYDKS 241
           LH SI+YDKS
Sbjct: 131 LHSSIHYDKS 140

[Close]
BLAST of CsGy3G019690 vs. TrEMBL
Match: tr|A0A0A0LAI5|A0A0A0LAI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239310 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.1e-49
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPA 60
           MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPA
Sbjct: 70  MVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPA 129

Query: 61  TSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLI 109
           TSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTL+
Sbjct: 130 TSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLM 177

[Close]
BLAST of CsGy3G019690 vs. TrEMBL
Match: tr|A0A0A0LW63|A0A0A0LW63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181550 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 0 

Query: 118 TCLTSPNPDFETQSLDVAIFGEDPI-EAHQL---FSILSPIPEDLNR-LFSNSTNVNFL- 177
           T LT+P        +  +I    P+ ++HQ     +IL PI EDL   + ++S +   L 
Sbjct: 11  TTLTAPITQTINPPIYKSIVQTKPVHQSHQSQLPLAILPPISEDLTHPIHTSSEHQQSLH 70

Query: 178 -TNNKCSTSSSKLLKPSRFAAILAPHGLNIMVFLLFPGQKNKRMASTASKHTKLQRELQN 237
              N  + S+  ++     A++LA HGL    F LF  QK  +  ST  K  K+QRELQN
Sbjct: 71  PNPNNQTASTQPIIPLPDLASLLAQHGLCTWAFPLFLLQKLLKDLSTTIKRNKMQRELQN 130

Query: 238 LHCSINYDKS 241
           LH SI+YDKS
Sbjct: 131 LHSSIHYDKS 140

The following BLAST results are available for this feature:
BLAST of CsGy3G019690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57667.19.2e-4999.07hypothetical protein Csa_3G239310 [Cucumis sativus][more]
KGN65042.12.1e-0536.92hypothetical protein Csa_1G181550 [Cucumis sativus][more]
BLAST of CsGy3G019690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G019690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G019690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAI5|A0A0A0LAI5_CUCSA6.1e-4999.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239310 PE=4 SV=1[more]
tr|A0A0A0LW63|A0A0A0LW63_CUCSA1.4e-0536.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181550 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019690.1CsGy3G019690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G019690Csa3G239310Cucumber (Chinese Long) v2cgybcuB109
CsGy3G019690MELO3C008497Melon (DHL92) v3.5.1cgybmeB210
CsGy3G019690CSPI03G19790Wild cucumber (PI 183967)cgybcpiB110
CsGy3G019690MELO3C008497.2Melon (DHL92) v3.6.1cgybmedB215
CsGy3G019690CsaV3_3G019860Cucumber (Chinese Long) v3cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G019690Cucumber (Gy14) v2cgybcgybB088
CsGy3G019690Cucurbita maxima (Rimu)cgybcmaB333
CsGy3G019690Cucurbita maxima (Rimu)cgybcmaB354
CsGy3G019690Cucurbita maxima (Rimu)cgybcmaB357
CsGy3G019690Cucurbita moschata (Rifu)cgybcmoB304
CsGy3G019690Cucurbita moschata (Rifu)cgybcmoB326
CsGy3G019690Cucurbita moschata (Rifu)cgybcmoB328
CsGy3G019690Cucurbita pepo (Zucchini)cgybcpeB285
CsGy3G019690Cucurbita pepo (Zucchini)cgybcpeB289
CsGy3G019690Cucurbita pepo (Zucchini)cgybcpeB318
CsGy3G019690Cucurbita pepo (Zucchini)cgybcpeB430
CsGy3G019690Bottle gourd (USVL1VR-Ls)cgyblsiB139
CsGy3G019690Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G019690Melon (DHL92) v3.6.1cgybmedB142
CsGy3G019690Watermelon (Charleston Gray)cgybwcgB214
CsGy3G019690Watermelon (97103) v1cgybwmB229
CsGy3G019690Silver-seed gourdcarcgybB0543
CsGy3G019690Silver-seed gourdcarcgybB0545
CsGy3G019690Silver-seed gourdcarcgybB0974
CsGy3G019690Cucumber (Chinese Long) v3cgybcucB133
CsGy3G019690Watermelon (97103) v2cgybwmbB169
CsGy3G019690Watermelon (97103) v2cgybwmbB206
CsGy3G019690Wax gourdcgybwgoB251
CsGy3G019690Wax gourdcgybwgoB271