CSPI03G19790 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G19790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 15482309 .. 15483260 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAATCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGGTGCACACTCAACCCCTTTTGTGAAGATAAGGCTCTCCTACATACGTATGATCCACTTATTGCACAAACCTACTAACCACTAACTGACACAAAGTTGAACACCACATTAAGTTTCTGGATGCTACGAAGTTAACATCTTTTCAATCATTACAGATAGCCCTTTGGCAGATGGATTGATATTTATAACCATATTCCTCCACTTTGGAAAGACGAGAATTTTCAATTTATTGGGAACCAATGTGGCGGTTTATCTCTGACCAATCTGATCAACATCAATATCACGGCTGCTCGATTGAAGATTAAGCCAAATACTCATGGCCTCATTCCAAAACAGCTCTCCTTGCTCACTAATTAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCGGAGTCAATTCCATCGGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATAACCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

mRNA sequence

ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAATCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCGGAGTCAATTCCATCGGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATAACCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

Coding sequence (CDS)

ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAATCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCGGAGTCAATTCCATCGGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATAACCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA
Homology
[Close]
BLAST of CSPI03G19790 vs. TrEMBL
Match: A0A0A0LAI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239310 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 9.5e-100
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 1 

Query: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSNHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60
           MGGPSHSPPKIHSFKIVVQAQPSASVQLSS+HTMPQPKGGHGCDPKIWTLQLLDRHLLRL
Sbjct: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60

Query: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120
           TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF
Sbjct: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120

Query: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPSESIPPLMPINCDNNQPRKKQIKLSKST 180
           LTRPLHQPATSSKPTVTTRSPKLPP     IPSESIPPLMPINCDN QPRKKQIKLSKST
Sbjct: 121 LTRPLHQPATSSKPTVTTRSPKLPP-----IPSESIPPLMPINCDNIQPRKKQIKLSKST 180

Query: 181 LMFLWNRSRRPHLSNSLL 199
           LMFLWNRSRRPHLSNSLL
Sbjct: 181 LMFLWNRSRRPHLSNSLL 193

[Close]
BLAST of CSPI03G19790 vs. NCBI nr
Match: gi|700202534|gb|KGN57667.1| (hypothetical protein Csa_3G239310 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.4e-99
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 1 

Query: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSNHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60
           MGGPSHSPPKIHSFKIVVQAQPSASVQLSS+HTMPQPKGGHGCDPKIWTLQLLDRHLLRL
Sbjct: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60

Query: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120
           TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF
Sbjct: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120

Query: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPSESIPPLMPINCDNNQPRKKQIKLSKST 180
           LTRPLHQPATSSKPTVTTRSPKLPP     IPSESIPPLMPINCDN QPRKKQIKLSKST
Sbjct: 121 LTRPLHQPATSSKPTVTTRSPKLPP-----IPSESIPPLMPINCDNIQPRKKQIKLSKST 180

Query: 181 LMFLWNRSRRPHLSNSLL 199
           LMFLWNRSRRPHLSNSLL
Sbjct: 181 LMFLWNRSRRPHLSNSLL 193

The following BLAST results are available for this feature:
BLAST of CSPI03G19790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAI5_CUCSA9.5e-10096.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239310 PE=4 SV=1[more]
BLAST of CSPI03G19790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G19790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202534|gb|KGN57667.1|1.4e-9996.46hypothetical protein Csa_3G239310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19790.1CSPI03G19790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19790Csa3G239310Cucumber (Chinese Long) v2cpicuB120
CSPI03G19790CsaV3_3G019860Cucumber (Chinese Long) v3cpicucB144
CSPI03G19790CsGy3G019690Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19790Melon (DHL92) v3.6.1cpimedB160
CSPI03G19790Melon (DHL92) v3.6.1cpimedB239
CSPI03G19790Cucumber (Gy14) v2cgybcpiB210
CSPI03G19790Silver-seed gourdcarcpiB0573
CSPI03G19790Silver-seed gourdcarcpiB0575
CSPI03G19790Silver-seed gourdcarcpiB1024
CSPI03G19790Cucumber (Chinese Long) v3cpicucB166
CSPI03G19790Watermelon (97103) v2cpiwmbB177
CSPI03G19790Watermelon (97103) v2cpiwmbB221
CSPI03G19790Wax gourdcpiwgoB263
CSPI03G19790Wax gourdcpiwgoB283
CSPI03G19790Wild cucumber (PI 183967)cpicpiB114
CSPI03G19790Cucumber (Gy14) v1cgycpiB003
CSPI03G19790Cucumber (Gy14) v1cgycpiB321
CSPI03G19790Cucurbita maxima (Rimu)cmacpiB290
CSPI03G19790Cucurbita maxima (Rimu)cmacpiB327
CSPI03G19790Cucurbita maxima (Rimu)cmacpiB414
CSPI03G19790Cucurbita maxima (Rimu)cmacpiB417
CSPI03G19790Cucurbita moschata (Rifu)cmocpiB280
CSPI03G19790Cucurbita moschata (Rifu)cmocpiB318
CSPI03G19790Cucurbita moschata (Rifu)cmocpiB402
CSPI03G19790Cucurbita moschata (Rifu)cmocpiB405
CSPI03G19790Cucurbita moschata (Rifu)cmocpiB601
CSPI03G19790Cucumber (Chinese Long) v2cpicuB139
CSPI03G19790Melon (DHL92) v3.5.1cpimeB169
CSPI03G19790Melon (DHL92) v3.5.1cpimeB241
CSPI03G19790Watermelon (Charleston Gray)cpiwcgB207
CSPI03G19790Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19790Watermelon (97103) v1cpiwmB242
CSPI03G19790Watermelon (97103) v1cpiwmB258
CSPI03G19790Cucurbita pepo (Zucchini)cpecpiB032
CSPI03G19790Cucurbita pepo (Zucchini)cpecpiB035
CSPI03G19790Cucurbita pepo (Zucchini)cpecpiB209
CSPI03G19790Cucurbita pepo (Zucchini)cpecpiB723
CSPI03G19790Bottle gourd (USVL1VR-Ls)cpilsiB151
CSPI03G19790Bottle gourd (USVL1VR-Ls)cpilsiB209