CSPI03G19790.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G19790.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 15482309 .. 15483260 (-)
Sequence length597
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAATCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGGTGCACACTCAACCCCTTTTGTGAAGATAAGGCTCTCCTACATACGTATGATCCACTTATTGCACAAACCTACTAACCACTAACTGACACAAAGTTGAACACCACATTAAGTTTCTGGATGCTACGAAGTTAACATCTTTTCAATCATTACAGATAGCCCTTTGGCAGATGGATTGATATTTATAACCATATTCCTCCACTTTGGAAAGACGAGAATTTTCAATTTATTGGGAACCAATGTGGCGGTTTATCTCTGACCAATCTGATCAACATCAATATCACGGCTGCTCGATTGAAGATTAAGCCAAATACTCATGGCCTCATTCCAAAACAGCTCTCCTTGCTCACTAATTAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCGGAGTCAATTCCATCGGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATAACCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

mRNA sequence

ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAATCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCGGAGTCAATTCCATCGGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATAACCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

Coding sequence (CDS)

ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAATCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCGGAGTCAATTCCATCGGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATAACCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA
Homology
[Close]
BLAST of CSPI03G19790.1 vs. TrEMBL
Match: A0A0A0LAI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239310 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 9.5e-100
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 1 

Query: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSNHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60
           MGGPSHSPPKIHSFKIVVQAQPSASVQLSS+HTMPQPKGGHGCDPKIWTLQLLDRHLLRL
Sbjct: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60

Query: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120
           TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF
Sbjct: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120

Query: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPSESIPPLMPINCDNNQPRKKQIKLSKST 180
           LTRPLHQPATSSKPTVTTRSPKLPP     IPSESIPPLMPINCDN QPRKKQIKLSKST
Sbjct: 121 LTRPLHQPATSSKPTVTTRSPKLPP-----IPSESIPPLMPINCDNIQPRKKQIKLSKST 180

Query: 181 LMFLWNRSRRPHLSNSLL 199
           LMFLWNRSRRPHLSNSLL
Sbjct: 181 LMFLWNRSRRPHLSNSLL 193

[Close]
BLAST of CSPI03G19790.1 vs. NCBI nr
Match: gi|700202534|gb|KGN57667.1| (hypothetical protein Csa_3G239310 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.4e-99
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 1 

Query: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSNHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60
           MGGPSHSPPKIHSFKIVVQAQPSASVQLSS+HTMPQPKGGHGCDPKIWTLQLLDRHLLRL
Sbjct: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60

Query: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120
           TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF
Sbjct: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120

Query: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPSESIPPLMPINCDNNQPRKKQIKLSKST 180
           LTRPLHQPATSSKPTVTTRSPKLPP     IPSESIPPLMPINCDN QPRKKQIKLSKST
Sbjct: 121 LTRPLHQPATSSKPTVTTRSPKLPP-----IPSESIPPLMPINCDNIQPRKKQIKLSKST 180

Query: 181 LMFLWNRSRRPHLSNSLL 199
           LMFLWNRSRRPHLSNSLL
Sbjct: 181 LMFLWNRSRRPHLSNSLL 193

The following BLAST results are available for this feature:
BLAST of CSPI03G19790.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19790.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAI5_CUCSA9.5e-10096.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239310 PE=4 SV=1[more]
BLAST of CSPI03G19790.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G19790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202534|gb|KGN57667.1|1.4e-9996.46hypothetical protein Csa_3G239310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G19790CSPI03G19790gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G19790.1CSPI03G19790.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G19790.1.cds2CSPI03G19790.1.cds2CDS
CSPI03G19790.1.cds1CSPI03G19790.1.cds1CDS