CsaV3_3G019860 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 15640788 .. 15641724 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAGTCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGGTGCACACTCAACCCCTTTTGTGAAGATAAGGCTCTCCTACATACGTATGATCCACTTATTGCACAAACCTACTAACCACTAACTGACACAAAGTTGAACCCCACATTAAGTTTCTGGATGCTACGAAGTTAACATCTTTTCAATCATTACAGGTAGCCCTTTGGCAGATGGATTGATATTTATAACCATATTCCTCCACTTTGGAAAGACGAGAATTTTCAATTTATTGGGAACCAATGTGGCGGTTTATCTCTGACCAATCTGATCAACATCAATATCACGGCTGCTCGATTGAAGATTAAGCCAAATACTCATGGCCTCATTCCAAAACAGCTCTCCTTGCTCACTAATTAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCAGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATATCCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

mRNA sequence

ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAGTCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCAGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATATCCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

Coding sequence (CDS)

ATGGGTGGCCCATCACATTCTCCTCCAAAAATTCATAGTTTCAAGATCGTTGTGCAAGCACAACCTTCTGCATCCGTCCAGCTGTCATCAAGTCACACTATGCCTCAGCCGAAAGGAGGCCATGGTTGTGATCCAAAGATCTGGACTTTGCAACTCTTGGATAGACATTTGCTCCGCCTTACAATCCTCTCTGGCAGTAAGTGTGGCATGGTCTGTATTGTGGATATTAGGGACGTATCTACTGGAAAACTGAACAAGAAGATATTGGAAGTCTCCGACCAGCTGACTGTCACTAATCAACCGAAGATATCTGCACGGCTAGACTCTCAACAATCGGCGGTGACATCGAACCAGACCTTTCTTACCCGGCCACTTCACCAACCAGCAACATCATCGAAACCAACAGTTACAACTAGGTCTCCCAAACTCCCTCCAATTCCATCAGAGTCAATTCCGCCGTTAATGCCAATAAATTGCGACAATATCCAGCCAAGAAAGAAGCAAATAAAATTGAGCAAGTCAACCCTCATGTTTTTGTGGAACAGATCACGTCGCCCACATCTGAGCAACTCCCTCCTTTAA

Protein sequence

MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRLTILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTFLTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLWNRSRRPHLSNSLL
Homology
[Close]
BLAST of CsaV3_3G019860 vs. NCBI nr
Match: KGN57667.1 (hypothetical protein Csa_3G239310 [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 1.9e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60
           MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL
Sbjct: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60

Query: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120
           TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF
Sbjct: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120

Query: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLW 180
           LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLW
Sbjct: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLW 180

Query: 181 NRSRRPHLSNSLL 194
           NRSRRPHLSNSLL
Sbjct: 181 NRSRRPHLSNSLL 193

[Close]
BLAST of CsaV3_3G019860 vs. TrEMBL
Match: tr|A0A0A0LAI5|A0A0A0LAI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239310 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 1.3e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60
           MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL
Sbjct: 1   MGGPSHSPPKIHSFKIVVQAQPSASVQLSSSHTMPQPKGGHGCDPKIWTLQLLDRHLLRL 60

Query: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120
           TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF
Sbjct: 61  TILSGSKCGMVCIVDIRDVSTGKLNKKILEVSDQLTVTNQPKISARLDSQQSAVTSNQTF 120

Query: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLW 180
           LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLW
Sbjct: 121 LTRPLHQPATSSKPTVTTRSPKLPPIPSESIPPLMPINCDNIQPRKKQIKLSKSTLMFLW 180

Query: 181 NRSRRPHLSNSLL 194
           NRSRRPHLSNSLL
Sbjct: 181 NRSRRPHLSNSLL 193

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57667.11.9e-102100.00hypothetical protein Csa_3G239310 [Cucumis sativus][more]
BLAST of CsaV3_3G019860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAI5|A0A0A0LAI5_CUCSA1.3e-102100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239310 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019860.1CsaV3_3G019860.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..144

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G019860CSPI03G19790Wild cucumber (PI 183967)cpicucB144
CsaV3_3G019860CsGy3G019690Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019860Cucurbita maxima (Rimu)cmacucB0334
CsaV3_3G019860Cucurbita maxima (Rimu)cmacucB0374
CsaV3_3G019860Cucurbita maxima (Rimu)cmacucB0489
CsaV3_3G019860Cucurbita maxima (Rimu)cmacucB0491
CsaV3_3G019860Cucurbita maxima (Rimu)cmacucB0723
CsaV3_3G019860Cucurbita moschata (Rifu)cmocucB0328
CsaV3_3G019860Cucurbita moschata (Rifu)cmocucB0373
CsaV3_3G019860Cucurbita moschata (Rifu)cmocucB0478
CsaV3_3G019860Cucurbita moschata (Rifu)cmocucB0480
CsaV3_3G019860Cucurbita moschata (Rifu)cmocucB0710
CsaV3_3G019860Cucurbita pepo (Zucchini)cpecucB0036
CsaV3_3G019860Cucurbita pepo (Zucchini)cpecucB0204
CsaV3_3G019860Cucurbita pepo (Zucchini)cpecucB0248
CsaV3_3G019860Cucurbita pepo (Zucchini)cpecucB0899
CsaV3_3G019860Wild cucumber (PI 183967)cpicucB266
CsaV3_3G019860Bottle gourd (USVL1VR-Ls)cuclsiB165
CsaV3_3G019860Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G019860Melon (DHL92) v3.5.1cucmeB171
CsaV3_3G019860Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019860Melon (DHL92) v3.6.1cucmedB161
CsaV3_3G019860Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019860Watermelon (Charleston Gray)cucwcgB208
CsaV3_3G019860Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019860Watermelon (97103) v1cucwmB252
CsaV3_3G019860Watermelon (97103) v1cucwmB268
CsaV3_3G019860Watermelon (97103) v2cucwmbB175
CsaV3_3G019860Watermelon (97103) v2cucwmbB217
CsaV3_3G019860Wax gourdcucwgoB266
CsaV3_3G019860Wax gourdcucwgoB287
CsaV3_3G019860Cucumber (Chinese Long) v3cuccucB123
CsaV3_3G019860Silver-seed gourdcarcucB0574
CsaV3_3G019860Silver-seed gourdcarcucB0576
CsaV3_3G019860Silver-seed gourdcarcucB1030
CsaV3_3G019860Cucumber (Gy14) v2cgybcucB213
CsaV3_3G019860Cucumber (Gy14) v1cgycucB006
CsaV3_3G019860Cucumber (Gy14) v1cgycucB326