MELO3C008497 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008497
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDystroglycan
Locationchr6 : 8629461 .. 8630079 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCACGAACCTTCAAACAGCCACTGCCCATTTCACCAGCTTGTATAGCCCGACCCATTTTGCCTCAGATTCTGAAACTTACCTTACTAGCCCAAATCCTGATTTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTACTGAAGCCCATCAACTCCTTTTGATTCTTCCACCTATTCCCAAAGATCTTAATCGGTTGGTTCATAGCTCTCCAACTCCACTAACGTCAACTTCCTCGCAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTTAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAGTATTATGGTTGTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACGTGCTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATTATGGTGATCAATGAAAGTTATCTCTTGGAATGTTTGCGAACTTAATTCCTGGAGAAAACGAGCCTTGGTTAAATAGTTGATTCAACTTTACAACCCTAATTTTGTTCTTTTGCAGGAAACCAAGTTATCTAG

mRNA sequence

ATGGGCCCACGAACCTTCAAACAGCCACTGCCCATTTCACCAGCTTGTATAGCCCGACCCATTTTGCCTCAGATTCTGAAACTTACCTTACTAGCCCAAATCCTGATTTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTACTGAAGCCCATCAACTCCTTTTGATTCTTCCACCTATTCCCAAAGATCTTAATCGGTTGGTTCATAGCTCTCCAACTCCACTAACGTCAACTTCCTCGCAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTTAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAGTATTATGGTTGTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACGTGCTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATTATGGAAACCAAGTTATCTAG

Coding sequence (CDS)

ATGGGCCCACGAACCTTCAAACAGCCACTGCCCATTTCACCAGCTTGTATAGCCCGACCCATTTTGCCTCAGATTCTGAAACTTACCTTACTAGCCCAAATCCTGATTTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTACTGAAGCCCATCAACTCCTTTTGATTCTTCCACCTATTCCCAAAGATCTTAATCGGTTGGTTCATAGCTCTCCAACTCCACTAACGTCAACTTCCTCGCAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTTAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAGTATTATGGTTGTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACGTGCTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATTATGGAAACCAAGTTATCTAG

Protein sequence

MGPRTFKQPLPISPACIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLILPPIPKDLNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYGNQVI*
Homology
[Close]
BLAST of MELO3C008497 vs. TrEMBL
Match: A0A0A0LW63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181550 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-08
Identity = 45/104 (43.27%), Postives = 53/104 (50.96%), Query Frame = 1 

Query: 58  LLILPPIPKDLNRLVHSS--------PTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHM 117
           L ILPPI +DL   +H+S        P P   T+S    +P P   SL        L   
Sbjct: 45  LAILPPISEDLTHPIHTSSEHQQSLHPNPNNQTASTQPIIPLPDLASL--------LAQH 104

Query: 118 DLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKS 154
            L  W F LF  QK  +  ST  KR K+QRELQNLH SI+YDKS
Sbjct: 105 GLCTWAFPLFLLQKLLKDLSTTIKRNKMQRELQNLHSSIHYDKS 140

[Close]
BLAST of MELO3C008497 vs. NCBI nr
Match: gi|700209946|gb|KGN65042.1| (hypothetical protein Csa_1G181550 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 45/104 (43.27%), Postives = 53/104 (50.96%), Query Frame = 1 

Query: 58  LLILPPIPKDLNRLVHSS--------PTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHM 117
           L ILPPI +DL   +H+S        P P   T+S    +P P   SL        L   
Sbjct: 45  LAILPPISEDLTHPIHTSSEHQQSLHPNPNNQTASTQPIIPLPDLASL--------LAQH 104

Query: 118 DLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKS 154
            L  W F LF  QK  +  ST  KR K+QRELQNLH SI+YDKS
Sbjct: 105 GLCTWAFPLFLLQKLLKDLSTTIKRNKMQRELQNLHSSIHYDKS 140

The following BLAST results are available for this feature:
BLAST of MELO3C008497 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW63_CUCSA4.3e-0843.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181550 PE=4 SV=1[more]
BLAST of MELO3C008497 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209946|gb|KGN65042.1|6.1e-0843.27hypothetical protein Csa_1G181550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44746melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008497T1MELO3C008497T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44746MU44746transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008497CsGy3G019690Cucumber (Gy14) v2cgybmeB210
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008497Silver-seed gourdcarmeB0513
MELO3C008497Silver-seed gourdcarmeB0544
MELO3C008497Silver-seed gourdcarmeB0546
MELO3C008497Silver-seed gourdcarmeB0966
MELO3C008497Cucumber (Chinese Long) v3cucmeB247
MELO3C008497Cucumber (Chinese Long) v3cucmeB256
MELO3C008497Cucumber (Chinese Long) v3cucmeB416
MELO3C008497Watermelon (97103) v2mewmbB425
MELO3C008497Watermelon (97103) v2mewmbB434
MELO3C008497Watermelon (97103) v2mewmbB437
MELO3C008497Wax gourdmewgoB517
MELO3C008497Wax gourdmewgoB530
MELO3C008497Melon (DHL92) v3.5.1memeB016
MELO3C008497Melon (DHL92) v3.5.1memeB150
MELO3C008497Cucumber (Gy14) v1cgymeB002
MELO3C008497Cucumber (Gy14) v1cgymeB368
MELO3C008497Cucumber (Gy14) v1cgymeB438
MELO3C008497Cucurbita maxima (Rimu)cmameB376
MELO3C008497Cucurbita maxima (Rimu)cmameB280
MELO3C008497Cucurbita maxima (Rimu)cmameB296
MELO3C008497Cucurbita maxima (Rimu)cmameB375
MELO3C008497Cucurbita maxima (Rimu)cmameB579
MELO3C008497Cucurbita moschata (Rifu)cmomeB272
MELO3C008497Cucurbita moschata (Rifu)cmomeB289
MELO3C008497Cucurbita moschata (Rifu)cmomeB369
MELO3C008497Cucurbita moschata (Rifu)cmomeB368
MELO3C008497Cucurbita moschata (Rifu)cmomeB567
MELO3C008497Wild cucumber (PI 183967)cpimeB241
MELO3C008497Wild cucumber (PI 183967)cpimeB249
MELO3C008497Wild cucumber (PI 183967)cpimeB404
MELO3C008497Cucumber (Chinese Long) v2cumeB238
MELO3C008497Cucumber (Chinese Long) v2cumeB254
MELO3C008497Watermelon (Charleston Gray)mewcgB423
MELO3C008497Watermelon (Charleston Gray)mewcgB427
MELO3C008497Watermelon (Charleston Gray)mewcgB433
MELO3C008497Watermelon (97103) v1mewmB461
MELO3C008497Watermelon (97103) v1mewmB470
MELO3C008497Watermelon (97103) v1mewmB482
MELO3C008497Cucurbita pepo (Zucchini)cpemeB039
MELO3C008497Cucurbita pepo (Zucchini)cpemeB043
MELO3C008497Cucurbita pepo (Zucchini)cpemeB176
MELO3C008497Cucurbita pepo (Zucchini)cpemeB193
MELO3C008497Cucurbita pepo (Zucchini)cpemeB701
MELO3C008497Bottle gourd (USVL1VR-Ls)lsimeB035
MELO3C008497Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C008497Bottle gourd (USVL1VR-Ls)lsimeB375
MELO3C008497Cucumber (Gy14) v2cgybmeB218
MELO3C008497Cucumber (Gy14) v2cgybmeB354