CsGy3G014940 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G014940
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 10983156 .. 10984373 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCAATCAAATTATATTCCATACTGATAAACAAATAGAATTAGATTTGGTTAATGGGAATCTTTATGTTCCTTAATTTGCAAGAAGAGAACATACCAAAGTGCAGATTCCATAAATTACAAACTTCTTTAGAAGCTGATCACACAAATCAATGATTCTTCATCCTTCTTCCTACCAACCAACTCCCAGCAAAATTAACAACACCGCACCAAATAATTATAATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAATATTTTGTTGATAACATATATATAATATAAAGTTTGTTAATTAATCTTATAGTTTGTGTGTATAGCATTTATTATGTTTATATGGATTAGCATTAGTTTAGTTATGTTTCCCAACTTATTTTTCTCTTTTGAATGTTGATTAATGTACATATGTTGAAGTATTACAATTGTTGATCCATAAATTACTAACACAATTATTATTCGATTATCTTCTATTTCAAAATTAGAGACTTACTACTTTCATCTCTGTCCTAAGCTAAAAATTACTTTTATTTACTTAATACATTAATTTGCATGTTTTTTTGTTTTAATAATAACTAAACACTAATTTTTTATACGTGATAATTACAAATTTAACAATTACATTCCGAAACCTTTAAAAAAATTATAAATATAATAAAATTTGTCAAATTCTATTAATTATAGAAGTCTACCATACTATATTGTAAATATTGGTTTATCGCTAACATACACAAGTCTACTAACGATAATTTTACTATATTTATAATTTTTTTAAACGTTAGTATTCTTCATTATTATCCCTAAGATGCACTCAATTCCGGTTACACTTTGACACCTAATTTAGATGAATCAAACTCATGGGAGATTGGATTGGCCCAACGTGAATTTCTTTGGTTAATAGGCTTATTGGGCCTAGGCCCTTGGGTATGGTAG

mRNA sequence

ATCTCAATCAAATTATATTCCATACTGATAAACAAATAGAATTAGATTTGGTTAATGGGAATCTTTATGTTCCTTAATTTGCAAGAAGAGAACATACCAAAGTGCAGATTCCATAAATTACAAACTTCTTTAGAAGCTGATCACACAAATCAATGATTCTTCATCCTTCTTCCTACCAACCAACTCCCAGCAAAATTAACAACACCGCACCAAATAATTATAATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGCCCTTGGGTATGGTAG

Coding sequence (CDS)

ATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGCCCTTGGGTATGGTAG

Protein sequence

MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRRTGRRRRNLIHEHGATRLLPSPWVW
Homology
[Close]
BLAST of CsGy3G014940 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_3G165670 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60
          MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA
Sbjct: 1  MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60

Query: 61 VYGSQQRRTGRRRRNLIHEHGATRLLPS 89
          VYGSQQRRTGRRRRNLIHEHGATRLLPS
Sbjct: 61 VYGSQQRRTGRRRRNLIHEHGATRLLPS 88

[Close]
BLAST of CsGy3G014940 vs. TrEMBL
Match: tr|A0A0A0L5C0|A0A0A0L5C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.8e-30
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60
          MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA
Sbjct: 1  MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60

Query: 61 VYGSQQRRTGRRRRNLIHEHGATRLLPS 89
          VYGSQQRRTGRRRRNLIHEHGATRLLPS
Sbjct: 61 VYGSQQRRTGRRRRNLIHEHGATRLLPS 88

The following BLAST results are available for this feature:
BLAST of CsGy3G014940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57150.11.0e-29100.00hypothetical protein Csa_3G165670 [Cucumis sativus][more]
BLAST of CsGy3G014940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G014940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G014940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5C0|A0A0A0L5C0_CUCSA6.8e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G014940.1CsGy3G014940.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..76

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G014940Csa3G165670Cucumber (Chinese Long) v2cgybcuB109
CsGy3G014940MELO3C006699Melon (DHL92) v3.5.1cgybmeB200
CsGy3G014940CSPI03G14830Wild cucumber (PI 183967)cgybcpiB110
CsGy3G014940MELO3C006699.2Melon (DHL92) v3.6.1cgybmedB201
CsGy3G014940CsaV3_3G015030Cucumber (Chinese Long) v3cgybcucB117
CsGy3G014940Cla97C05G088000Watermelon (97103) v2cgybwmbB196
CsGy3G014940Bhi01G000765Wax gourdcgybwgoB257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G014940Cucumber (Gy14) v2cgybcgybB109
CsGy3G014940Cucurbita maxima (Rimu)cgybcmaB274
CsGy3G014940Cucurbita maxima (Rimu)cgybcmaB318
CsGy3G014940Cucurbita maxima (Rimu)cgybcmaB345
CsGy3G014940Cucurbita maxima (Rimu)cgybcmaB427
CsGy3G014940Cucurbita maxima (Rimu)cgybcmaB454
CsGy3G014940Cucurbita moschata (Rifu)cgybcmoB290
CsGy3G014940Cucurbita moschata (Rifu)cgybcmoB317
CsGy3G014940Cucurbita moschata (Rifu)cgybcmoB401
CsGy3G014940Cucurbita moschata (Rifu)cgybcmoB421
CsGy3G014940Cucurbita pepo (Zucchini)cgybcpeB303
CsGy3G014940Cucurbita pepo (Zucchini)cgybcpeB348
CsGy3G014940Cucurbita pepo (Zucchini)cgybcpeB406
CsGy3G014940Cucurbita pepo (Zucchini)cgybcpeB454
CsGy3G014940Cucumber (Chinese Long) v2cgybcuB146
CsGy3G014940Bottle gourd (USVL1VR-Ls)cgyblsiB136
CsGy3G014940Bottle gourd (USVL1VR-Ls)cgyblsiB184
CsGy3G014940Melon (DHL92) v3.5.1cgybmeB149
CsGy3G014940Melon (DHL92) v3.6.1cgybmedB148
CsGy3G014940Watermelon (Charleston Gray)cgybwcgB203
CsGy3G014940Watermelon (Charleston Gray)cgybwcgB230
CsGy3G014940Watermelon (97103) v1cgybwmB217
CsGy3G014940Watermelon (97103) v1cgybwmB262
CsGy3G014940Wild cucumber (PI 183967)cgybcpiB149
CsGy3G014940Silver-seed gourdcarcgybB0072
CsGy3G014940Silver-seed gourdcarcgybB0294
CsGy3G014940Silver-seed gourdcarcgybB0700
CsGy3G014940Silver-seed gourdcarcgybB0939
CsGy3G014940Cucumber (Chinese Long) v3cgybcucB149
CsGy3G014940Watermelon (97103) v2cgybwmbB222
CsGy3G014940Wax gourdcgybwgoB240