Cla97C05G088000 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G088000
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 6085550 .. 6085876 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCATCTTCTTCATCTCAATTACCAACTCCAAGAACACCAAATAATAATGAGTTGTGAGAATCCCACTTCCAGAGCTTGCGATCCCGCCGCCACGACCAGCGGAAATCAACCGATGAAGGCGGAGAAAAACTCGAACTCAAAAGCCGCCGCGGTCAGCTCCAATATGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACCGGAAGAAGAAGAAGAAACCTCATCCATGACCATGGCATTCGACTGCTGCCTAGTAGGCTCAGCAAAGTTTCTTTAGCTGATCATAATTCCTCACCCTTTGATTAA

mRNA sequence

ATGTTTCATCTTCTTCATCTCAATTACCAACTCCAAGAACACCAAATAATAATGAGTTGTGAGAATCCCACTTCCAGAGCTTGCGATCCCGCCGCCACGACCAGCGGAAATCAACCGATGAAGGCGGAGAAAAACTCGAACTCAAAAGCCGCCGCGGTCAGCTCCAATATGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACCGGAAGAAGAAGAAGAAACCTCATCCATGACCATGGCATTCGACTGCTGCCTAGTAGGCTCAGCAAAGTTTCTTTAGCTGATCATAATTCCTCACCCTTTGATTAA

Coding sequence (CDS)

ATGTTTCATCTTCTTCATCTCAATTACCAACTCCAAGAACACCAAATAATAATGAGTTGTGAGAATCCCACTTCCAGAGCTTGCGATCCCGCCGCCACGACCAGCGGAAATCAACCGATGAAGGCGGAGAAAAACTCGAACTCAAAAGCCGCCGCGGTCAGCTCCAATATGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACCGGAAGAAGAAGAAGAAACCTCATCCATGACCATGGCATTCGACTGCTGCCTAGTAGGCTCAGCAAAGTTTCTTTAGCTGATCATAATTCCTCACCCTTTGATTAA

Protein sequence

MFHLLHLNYQLQEHQIIMSCENPTSRACDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHGIRLLPSRLSKVSLADHNSSPFD

Homology

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BLAST of Cla97C05G088000 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_3G165670 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 8.1e-18
Identity = 66/98 (67.35%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 22  NPTSRACDPAATTSGNQ-PMKAEKN-------SNSKAAAVSSNMGKALAERAVYGSQQRR 81
           N  S A DPAATT G Q P KAEKN                +N+GKALAERAVYGSQQRR
Sbjct: 9   NSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERAVYGSQQRR 68

Query: 82  TGRRRRNLIHDHG-IRLLPSRLSKVSLADH--NSSPFD 109
           TGRRRRNLIH+HG  RLLPSRLSKVSLADH  NSSP D
Sbjct: 69  TGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

[Close]

BLAST of Cla97C05G088000 vs. NCBI nr
Match: EEF47303.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 34  TSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHGIRLLPSR 93
           T GNQ   AE +SNSK        GKALA RA+YGS  RR G R+   + D+  R LPSR
Sbjct: 15  TDGNQEKSAESSSNSKEFTAPPRFGKALAHRALYGSSSRRAGSRK---VRDNDTRTLPSR 74

Query: 94  LSKVSLAD 102
           LS VSLAD
Sbjct: 75  LSNVSLAD 79

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BLAST of Cla97C05G088000 vs. NCBI nr
Match: EXB55754.1 (hypothetical protein L484_007750 [Morus notabilis])

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 29  DPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHGIR 88
           D  A TS NQ    EK  N+K    SS++ KALA+RA+ GS+ R+TG RR   I  +  R
Sbjct: 10  DLEACTSSNQVNLQEKKPNTK-GTTSSDLEKALAKRALLGSRHRQTGGRR---ISSNAAR 69

Query: 89  LLPSRLSKVSLAD 102
           LLPSRLSKVSLA+
Sbjct: 70  LLPSRLSKVSLAE 78

[Close]

BLAST of Cla97C05G088000 vs. NCBI nr
Match: POF25494.1 (hypothetical protein CFP56_39099 [Quercus suber] >POF25497.1 hypothetical protein CFP56_39102 [Quercus suber])

HSP 1 Score: 53.5 bits (127), Expect = 5.1e-04
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 27  ACDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHG 86
           A D  A TS NQ   ++K  N+K    ++N+GKALA+RA+ GSQ  R GRR+     +  
Sbjct: 8   ANDLDACTSSNQAKTSDKKPNTK-GTTNTNLGKALAQRALSGSQNHRVGRRK---FANSS 67

Query: 87  IRLLPSRLSKVSLAD 102
            + LPSRLSKVSLA+
Sbjct: 68  AKSLPSRLSKVSLAE 78

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BLAST of Cla97C05G088000 vs. TrEMBL
Match: tr|A0A0A0L5C0|A0A0A0L5C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 66/98 (67.35%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 22  NPTSRACDPAATTSGNQ-PMKAEKN-------SNSKAAAVSSNMGKALAERAVYGSQQRR 81
           N  S A DPAATT G Q P KAEKN                +N+GKALAERAVYGSQQRR
Sbjct: 9   NSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERAVYGSQQRR 68

Query: 82  TGRRRRNLIHDHG-IRLLPSRLSKVSLADH--NSSPFD 109
           TGRRRRNLIH+HG  RLLPSRLSKVSLADH  NSSP D
Sbjct: 69  TGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

[Close]

BLAST of Cla97C05G088000 vs. TrEMBL
Match: tr|B9RNI0|B9RNI0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1348020 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 34  TSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHGIRLLPSR 93
           T GNQ   AE +SNSK        GKALA RA+YGS  RR G R+   + D+  R LPSR
Sbjct: 15  TDGNQEKSAESSSNSKEFTAPPRFGKALAHRALYGSSSRRAGSRK---VRDNDTRTLPSR 74

Query: 94  LSKVSLAD 102
           LS VSLAD
Sbjct: 75  LSNVSLAD 79

[Close]

BLAST of Cla97C05G088000 vs. TrEMBL
Match: tr|W9QVY7|W9QVY7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007750 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 29  DPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHGIR 88
           D  A TS NQ    EK  N+K    SS++ KALA+RA+ GS+ R+TG RR   I  +  R
Sbjct: 10  DLEACTSSNQVNLQEKKPNTK-GTTSSDLEKALAKRALLGSRHRQTGGRR---ISSNAAR 69

Query: 89  LLPSRLSKVSLAD 102
           LLPSRLSKVSLA+
Sbjct: 70  LLPSRLSKVSLAE 78

[Close]

BLAST of Cla97C05G088000 vs. TrEMBL
Match: tr|A0A2P4N6Y0|A0A2P4N6Y0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39099 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 27  ACDPAATTSGNQPMKAEKNSNSKAAAVSSNMGKALAERAVYGSQQRRTGRRRRNLIHDHG 86
           A D  A TS NQ   ++K  N+K    ++N+GKALA+RA+ GSQ  R GRR+     +  
Sbjct: 8   ANDLDACTSSNQAKTSDKKPNTK-GTTNTNLGKALAQRALSGSQNHRVGRRK---FANSS 67

Query: 87  IRLLPSRLSKVSLAD 102
            + LPSRLSKVSLA+
Sbjct: 68  AKSLPSRLSKVSLAE 78

The following BLAST results are available for this feature:

BLAST of Cla97C05G088000 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57150.1	8.1e-18	67.35	hypothetical protein Csa_3G165670 [Cucumis sativus]	[more]
EEF47303.1	1.9e-06	54.41	conserved hypothetical protein [Ricinus communis]	[more]
EXB55754.1	1.7e-04	53.42	hypothetical protein L484_007750 [Morus notabilis]	[more]
POF25494.1	5.1e-04	48.00	hypothetical protein CFP56_39099 [Quercus suber] >POF25497.1 hypothetical protei...	[more]

BLAST of Cla97C05G088000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5C0\|A0A0A0L5C0_CUCSA	5.4e-18	67.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1	[more]
tr\|B9RNI0\|B9RNI0_RICCO	1.2e-06	54.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1348020 PE=4 SV=1	[more]
tr\|W9QVY7\|W9QVY7_9ROSA	1.2e-04	53.42	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007750 PE=4 SV=1	[more]
tr\|A0A2P4N6Y0\|A0A2P4N6Y0_QUESU	3.4e-04	48.00	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39099 PE=4 SV=1	[more]

BLAST of Cla97C05G088000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G088000 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G088000.1	Cla97C05G088000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G088000	Csa3G165670	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G088000	MELO3C006699	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G088000	CSPI03G14830	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G088000	CsGy3G014940	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G088000	MELO3C006699.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G088000	CsaV3_3G015030	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G088000	Bhi01G000765	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G088000	Watermelon (97103) v2	wmbwmbB137
Cla97C05G088000	Silver-seed gourd	carwmbB0069
Cla97C05G088000	Silver-seed gourd	carwmbB0287
Cla97C05G088000	Silver-seed gourd	carwmbB0734
Cla97C05G088000	Silver-seed gourd	carwmbB1003
Cla97C05G088000	Cucumber (Gy14) v2	cgybwmbB442
Cla97C05G088000	Cucumber (Gy14) v1	cgywmbB066
Cla97C05G088000	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G088000	Cucurbita maxima (Rimu)	cmawmbB001
Cla97C05G088000	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G088000	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G088000	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G088000	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G088000	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G088000	Cucurbita moschata (Rifu)	cmowmbB351
Cla97C05G088000	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G088000	Cucurbita moschata (Rifu)	cmowmbB887
Cla97C05G088000	Wild cucumber (PI 183967)	cpiwmbB490
Cla97C05G088000	Cucumber (Chinese Long) v3	cucwmbB483
Cla97C05G088000	Cucumber (Chinese Long) v2	cuwmbB465
Cla97C05G088000	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G088000	Bottle gourd (USVL1VR-Ls)	lsiwmbB330
Cla97C05G088000	Melon (DHL92) v3.6.1	medwmbB114
Cla97C05G088000	Melon (DHL92) v3.5.1	mewmbB123
Cla97C05G088000	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G088000	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G088000	Watermelon (97103) v1	wmwmbB206
Cla97C05G088000	Watermelon (97103) v1	wmwmbB402
Cla97C05G088000	Wax gourd	wgowmbB076