Csa3G165670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G165670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 10949293 .. 10949752 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATTCTTCATCCTTCTTCCTACCAACCAACTCCCAGCAAAATTAACAACACCGCACCAAATAATTATAATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAATATTTTGTTGATAACATATATATAATATAAAGTTTGTTAATTAATCTTATAGTTTGTGTGTATAGCATTT

mRNA sequence

ATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAA

Coding sequence (CDS)

ATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAA

Protein sequence

MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD*
Homology
[Close]
BLAST of Csa3G165670 vs. TrEMBL
Match: A0A0A0L5C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.1e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Sbjct: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

[Close]
BLAST of Csa3G165670 vs. NCBI nr
Match: gi|700202017|gb|KGN57150.1| (hypothetical protein Csa_3G165670 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 8.8e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Sbjct: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

The following BLAST results are available for this feature:
BLAST of Csa3G165670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5C0_CUCSA6.1e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165670 PE=4 SV=1[more]
BLAST of Csa3G165670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202017|gb|KGN57150.1|8.8e-53100.00hypothetical protein Csa_3G165670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU158920cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G165670.1Csa3G165670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU158920CU158920transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G165670MELO3C006699Melon (DHL92) v3.5.1cumeB236
Csa3G165670MELO3C006699.2Melon (DHL92) v3.6.1cumedB223
Csa3G165670Cla97C05G088000Watermelon (97103) v2cuwmbB204
Csa3G165670Bhi01G000765Wax gourdcuwgoB269
Csa3G165670CSPI03G14830Wild cucumber (PI 183967)cpicuB120
Csa3G165670Cp4.1LG08g05120Cucurbita pepo (Zucchini)cpecuB859
Csa3G165670CsGy3G014940Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G165670Watermelon (97103) v2cuwmbB231
Csa3G165670Wax gourdcuwgoB253
Csa3G165670Cucumber (Chinese Long) v2cucuB120
Csa3G165670Cucumber (Gy14) v1cgycuB063
Csa3G165670Cucumber (Gy14) v1cgycuB366
Csa3G165670Cucurbita maxima (Rimu)cmacuB000
Csa3G165670Cucurbita maxima (Rimu)cmacuB253
Csa3G165670Cucurbita maxima (Rimu)cmacuB355
Csa3G165670Cucurbita maxima (Rimu)cmacuB814
Csa3G165670Cucurbita maxima (Rimu)cmacuB885
Csa3G165670Cucurbita moschata (Rifu)cmocuB239
Csa3G165670Cucurbita moschata (Rifu)cmocuB345
Csa3G165670Cucurbita moschata (Rifu)cmocuB806
Csa3G165670Cucurbita moschata (Rifu)cmocuB872
Csa3G165670Melon (DHL92) v3.5.1cumeB180
Csa3G165670Watermelon (Charleston Gray)cuwcgB222
Csa3G165670Watermelon (Charleston Gray)cuwcgB247
Csa3G165670Watermelon (97103) v1cuwmB233
Csa3G165670Watermelon (97103) v1cuwmB279
Csa3G165670Cucurbita pepo (Zucchini)cpecuB132
Csa3G165670Cucurbita pepo (Zucchini)cpecuB307
Csa3G165670Cucurbita pepo (Zucchini)cpecuB609
Csa3G165670Bottle gourd (USVL1VR-Ls)culsiB150
Csa3G165670Bottle gourd (USVL1VR-Ls)culsiB199
Csa3G165670Cucumber (Gy14) v2cgybcuB263
Csa3G165670Melon (DHL92) v3.6.1cumedB165
Csa3G165670Silver-seed gourdcarcuB0071
Csa3G165670Silver-seed gourdcarcuB0306
Csa3G165670Silver-seed gourdcarcuB0723
Csa3G165670Silver-seed gourdcarcuB0967