CsaV3_3G015030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G015030
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 11144794 .. 11145584 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCTCCACCTAATCTCAATCAAATTATATTCCATACTGATAAACAAATAGAATTAGATTTGGTTAATGGGAATCTTTATGTTCCTTAATTTGCAAGAAGAGAACATACCAAAGTGCAGATTCCATAAATTACAAACTTCTTTAGAAGCTGATCACACAAATCAATGATTCTTCATCCTTCTTCCTACCAACCAACTCCCAGCAAAATTAACAACACCGCACCAAATAATTATAATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAATATTTTGTTGATAACATATATATAATATAAAGTTTGTTAATTAATCTTATAGTTTGTGTGTATAGCATTTATTATGTTTATATGGATTAGCATTAGTTTAGTTATGTTTCCCAACTTATTTTTCTCTTTTGAATGTTGATTAATGTACATATGTTGAAGTATTACAATTGTTGATCCATAAATTACTAACACAATTATTATTCGATTATCTTCTATTTCAAAATTAGAGACTTA

mRNA sequence

ATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAA

Coding sequence (CDS)

ATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAA

Protein sequence

MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Homology
[Close]
BLAST of CsaV3_3G015030 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_3G165670 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 5.7e-40
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Sbjct: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

[Close]
BLAST of CsaV3_3G015030 vs. TrEMBL
Match: tr|A0A0A0L5C0|A0A0A0L5C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-40
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNXXXXXXXXXXXXXXXXNNVGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Sbjct: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

The following BLAST results are available for this feature:
BLAST of CsaV3_3G015030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57150.15.7e-40100.00hypothetical protein Csa_3G165670 [Cucumis sativus][more]
BLAST of CsaV3_3G015030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G015030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G015030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5C0|A0A0A0L5C0_CUCSA3.8e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G015030.1CsaV3_3G015030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..51

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G015030CSPI03G14830Wild cucumber (PI 183967)cpicucB144
CsaV3_3G015030Cp4.1LG08g05120Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G015030CsGy3G014940Cucumber (Gy14) v2cgybcucB117
CsaV3_3G015030MELO3C006699Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G015030MELO3C006699.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G015030Cla97C05G088000Watermelon (97103) v2cucwmbB206
CsaV3_3G015030Bhi01G000765Wax gourdcucwgoB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G015030Cucumber (Chinese Long) v3cuccucB148
CsaV3_3G015030Silver-seed gourdcarcucB0079
CsaV3_3G015030Silver-seed gourdcarcucB0309
CsaV3_3G015030Silver-seed gourdcarcucB0741
CsaV3_3G015030Silver-seed gourdcarcucB0995
CsaV3_3G015030Cucumber (Gy14) v2cgybcucB276
CsaV3_3G015030Cucumber (Gy14) v1cgycucB066
CsaV3_3G015030Cucumber (Gy14) v1cgycucB387
CsaV3_3G015030Cucurbita maxima (Rimu)cmacucB0001
CsaV3_3G015030Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G015030Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G015030Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G015030Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G015030Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G015030Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G015030Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G015030Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G015030Cucurbita pepo (Zucchini)cpecucB0154
CsaV3_3G015030Cucurbita pepo (Zucchini)cpecucB0379
CsaV3_3G015030Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G015030Wild cucumber (PI 183967)cpicucB344
CsaV3_3G015030Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G015030Bottle gourd (USVL1VR-Ls)cuclsiB218
CsaV3_3G015030Melon (DHL92) v3.5.1cucmeB176
CsaV3_3G015030Melon (DHL92) v3.6.1cucmedB167
CsaV3_3G015030Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G015030Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G015030Watermelon (97103) v1cucwmB239
CsaV3_3G015030Watermelon (97103) v1cucwmB288
CsaV3_3G015030Watermelon (97103) v2cucwmbB233
CsaV3_3G015030Wax gourdcucwgoB257