CsGy3G012010 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G012010
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4
Location	Chr3 : 9149254 .. 9149787 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

mRNA sequence

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

Coding sequence (CDS)

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

Protein sequence

MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL

Homology

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_004134409.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothetical protein Csa_3G134980 [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 7.6e-98
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_008438509.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 2.7e-79
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQ 148
           PFGARPVRVYLREVRDLQAKARGISYQ
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQ 147

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: KZV26555.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Dorcoceras hygrometricum])

HSP 1 Score: 243.0 bits (619), Expect = 7.4e-61
Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLR 61
           DSL   +    + +SS TTLSRYENQKRRDW +FG Y++N  PPLAL+RC+GAHV++FLR
Sbjct: 29  DSLIMSSSPAGSSASSPTTLSRYENQKRRDWNTFGQYLSNHRPPLALSRCSGAHVLEFLR 88

Query: 62  YLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121
           YLDQFGKTK+H+ LCPFFGHP P   C CPLRQAWGSLDALVGRLRAAYEE+GG  ETNP
Sbjct: 89  YLDQFGKTKVHTQLCPFFGHPKPPAPCLCPLRQAWGSLDALVGRLRAAYEENGGKPETNP 148

Query: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
           FGAR VR+YLREVRD Q+KARGISY+KKKRK+P
Sbjct: 149 FGARAVRLYLREVRDSQSKARGISYEKKKRKKP 181

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_009102637.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Brassica rapa] >XP_013653070.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Brassica napus] >XP_013717716.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Brassica napus])

HSP 1 Score: 240.4 bits (612), Expect = 4.8e-60
Identity = 110/149 (73.83%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H  +CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHMQICPFFG 105

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
           HP+P   CTCPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVRD QAK
Sbjct: 106 HPNPPAPCTCPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 141 ARGISYQKKKRKRPLG---PPPSRSGASS 167
           ARGISY+KKKRKRP     PPP + G S+
Sbjct: 166 ARGISYEKKKRKRPPQAPLPPPHQPGISN 194

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_011083033.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Sesamum indicum])

HSP 1 Score: 240.0 bits (611), Expect = 6.3e-60
Identity = 110/142 (77.46%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 13  TPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIH 72
           TPSSSS +LSRYENQKRRDW +F  Y+ N  PPLAL RC+GAHV++FLRYLDQFGKTK+H
Sbjct: 28  TPSSSS-SLSRYENQKRRDWNTFCQYLKNHRPPLALTRCSGAHVLEFLRYLDQFGKTKVH 87

Query: 73  SNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLR 132
           + +CPF+GHP P   C CPLRQAWGSLDAL+GRLRAAYEE+GGN ETNPFGAR VR+YLR
Sbjct: 88  NPICPFYGHPHPPAHCPCPLRQAWGSLDALIGRLRAAYEENGGNPETNPFGARAVRLYLR 147

Query: 133 EVRDLQAKARGISYQKKKRKRP 155
           EVRDLQ+KARG+SY+KKKRKRP
Sbjct: 148 EVRDLQSKARGVSYEKKKRKRP 168

[Close]

BLAST of CsGy3G012010 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-59
Identity = 98/127 (77.17%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H++LCPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
           HP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVRD QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 141 ARGISYQ 148
           ARGISY+
Sbjct: 166 ARGISYE 172

[Close]

BLAST of CsGy3G012010 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 0


Query: 2   DSLQNDTV--IEPTP---SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHV 61
           DS ++D V   +P P   SS   T SRYE+QKRRDW +F  Y+ N  PPLAL+RC+GAHV
Sbjct: 5   DSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHV 64

Query: 62  VDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN 121
           ++FL+YLDQFGKTK+H   CP+FGH  P   C+CPL+QAWGSLDAL+GRLRAAYEE+GG 
Sbjct: 65  IEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGR 124

Query: 122 AETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            ++NPF AR VR+YLREVR+ QAKARGI Y+KKKRKRP
Sbjct: 125 PDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of CsGy3G012010 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53
Identity = 92/133 (69.17%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP         LRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPXXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQ 148
           RD+Q+KARG+SY+
Sbjct: 166 RDMQSKARGVSYE 178

[Close]

BLAST of CsGy3G012010 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 201.1 bits (510), Expect = 5.9e-52
Identity = 95/149 (63.76%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 6   NDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYL 65
           N ++   TPSS S+  + SRYENQKRRDW +F  Y+ N  PPL+LA C+GAHV+DFLRYL
Sbjct: 14  NTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYL 73

Query: 66  DQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFG 125
           DQFGKTK+H   C FFG P+P       LRQAWGSLDAL+GRLRAAYEE+GG  ET+PFG
Sbjct: 74  DQFGKTKVHHQNCAFFGLPNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFG 133

Query: 126 ARPVRVYLREVRDLQAKARGISYQKKKRK 153
           +R VR++LREVRD QAK+RG+SY+KK+++
Sbjct: 134 SRSVRIFLREVRDFQAKSRGVSYEKKRKR 162

[Close]

BLAST of CsGy3G012010 vs. TAIR10
Match: AT5G58500.1 (Protein of unknown function (DUF640))

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-50
Identity = 87/128 (67.97%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 22  SRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFGH 81
           SRYE+QKRRDW +F  Y+ N  PPL L+RC+GAHV++FL+YLDQFGKTK+H+  CPFFG 
Sbjct: 18  SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQ 77

Query: 82  PSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN-AETNPFGARPVRVYLREVRDLQAK 141
           P+P   CTCPL+QAWGSLDAL+GRLRAA+EE GG   E+NPF A+ VR+YL+EVR  QAK
Sbjct: 78  PNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAK 137

Query: 142 ARGISYQK 149
           ARGI Y K
Sbjct: 138 ARGIPYDK 145

[Close]

BLAST of CsGy3G012010 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.8e-58
Identity = 98/127 (77.17%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H++LCPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
           HP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVRD QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 141 ARGISYQ 148
           ARGISY+
Sbjct: 166 ARGISYE 172

[Close]

BLAST of CsGy3G012010 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.2e-55
Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 0


Query: 2   DSLQNDTV--IEPTP---SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHV 61
           DS ++D V   +P P   SS   T SRYE+QKRRDW +F  Y+ N  PPLAL+RC+GAHV
Sbjct: 5   DSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHV 64

Query: 62  VDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN 121
           ++FL+YLDQFGKTK+H   CP+FGH  P   C+CPL+QAWGSLDAL+GRLRAAYEE+GG 
Sbjct: 65  IEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGR 124

Query: 122 AETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            ++NPF AR VR+YLREVR+ QAKARGI Y+KKKRKRP
Sbjct: 125 PDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of CsGy3G012010 vs. Swiss-Prot
Match: sp|A2XED8|G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-53
Identity = 94/128 (73.44%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYE+QKRRDW +F  Y+ N  PPL LARC+GAHV++FLRYLDQFGKTK+H++ C F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
            PSP G C CPLRQAWGSLDAL+GRLRAAYEE GG  E+NPF AR VR+YLREVRD QAK
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 141 ARGISYQK 149
           ARGI Y+K
Sbjct: 149 ARGIPYEK 156

[Close]

BLAST of CsGy3G012010 vs. Swiss-Prot
Match: sp|Q941W1|G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-53
Identity = 94/128 (73.44%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYE+QKRRDW +F  Y+ N  PPL LARC+GAHV++FLRYLDQFGKTK+H++ C F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
            PSP G C CPLRQAWGSLDAL+GRLRAAYEE GG  E+NPF AR VR+YLREVRD QAK
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 141 ARGISYQK 149
           ARGI Y+K
Sbjct: 149 ARGIPYEK 156

[Close]

BLAST of CsGy3G012010 vs. Swiss-Prot
Match: sp|O82268|LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-52
Identity = 92/133 (69.17%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP         LRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPXXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQ 148
           RD+Q+KARG+SY+
Sbjct: 166 RDMQSKARGVSYE 178

[Close]

BLAST of CsGy3G012010 vs. TrEMBL
Match: tr|A0A0A0L4D7|A0A0A0L4D7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 5.0e-98
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177

[Close]

BLAST of CsGy3G012010 vs. TrEMBL
Match: tr|A0A1S3AX69|A0A1S3AX69_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC103483585 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.8e-79
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQ 148
           PFGARPVRVYLREVRDLQAKARGISYQ
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQ 147

[Close]

BLAST of CsGy3G012010 vs. TrEMBL
Match: tr|M4DEL3|M4DEL3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.2e-60
Identity = 110/149 (73.83%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H  +CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHMQICPFFG 105

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
           HP+P   CTCPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVRD QAK
Sbjct: 106 HPNPPAPCTCPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 141 ARGISYQKKKRKRPLG---PPPSRSGASS 167
           ARGISY+KKKRKRP     PPP + G S+
Sbjct: 166 ARGISYEKKKRKRPPQAPLPPPHQPGISN 194

[Close]

BLAST of CsGy3G012010 vs. TrEMBL
Match: tr|A0A0D3D5J0|A0A0D3D5J0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106305758 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.1e-59
Identity = 108/142 (76.06%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 21  LSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFG 80
           LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H  +CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHMQICPFFG 105

Query: 81  HPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAK 140
           HP+P   CTCPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVRD QAK
Sbjct: 106 HPNPPAPCTCPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 141 ARGISYQKKKRKRPLG---PPP 160
           ARGISY+KKKRKRP     PPP
Sbjct: 166 ARGISYEKKKRKRPPQAPLPPP 187

[Close]

BLAST of CsGy3G012010 vs. TrEMBL
Match: tr|A0A175YPH1|A0A175YPH1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027321 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.0e-58
Identity = 107/145 (73.79%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 22  SRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFGH 81
           SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+ LCPFFGH
Sbjct: 51  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHNQLCPFFGH 110

Query: 82  PSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAKA 141
           P+P G C CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YLREVRD Q+KA
Sbjct: 111 PNPPGPCPCPLRQAWGSLDALIGRLRAAYEENGGKPEANPFGARAVRLYLREVRDSQSKA 170

Query: 142 RGISYQKKKRKRP------LGPPPS 161
           RGISY+KKKRKRP       G PP+
Sbjct: 171 RGISYEKKKRKRPGQLQXXQGAPPA 195

The following BLAST results are available for this feature:

BLAST of CsGy3G012010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134409.1	7.6e-98	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN5685...	[more]
XP_008438509.1	2.7e-79	97.96	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo]	[more]
KZV26555.1	7.4e-61	73.86	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Dorcoceras hygrometricum]	[more]
XP_009102637.1	4.8e-60	73.83	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Brassica rapa] >XP_013653...	[more]
XP_011083033.1	6.3e-60	77.46	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Sesamum indicum]	[more]

BLAST of CsGy3G012010 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	3.8e-59	77.17	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.8e-56	65.19	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.4e-53	69.17	Protein of unknown function (DUF640)	[more]
AT3G04510.1	5.9e-52	63.76	Protein of unknown function (DUF640)	[more]
AT5G58500.1	2.5e-50	67.97	Protein of unknown function (DUF640)	[more]

BLAST of CsGy3G012010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW68\|LSH4_ARATH	6.8e-58	77.17	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LMK2\|LSH6_ARATH	3.2e-55	65.19	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XED8\|G1L7_ORYSI	1.7e-53	73.44	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
sp\|Q941W1\|G1L7_ORYSJ	1.7e-53	73.44	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
sp\|O82268\|LSH3_ARATH	2.5e-52	69.17	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CsGy3G012010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4D7\|A0A0A0L4D7_CUCSA	5.0e-98	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=4 SV=1	[more]
tr\|A0A1S3AX69\|A0A1S3AX69_CUCME	1.8e-79	97.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC1034835...	[more]
tr\|M4DEL3\|M4DEL3_BRARP	3.2e-60	73.83	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|A0A0D3D5J0\|A0A0D3D5J0_BRAOL	2.1e-59	76.06	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10630575...	[more]
tr\|A0A175YPH1\|A0A175YPH1_DAUCA	1.0e-58	73.79	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027321 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G012010.1	CsGy3G012010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 16..136 e-value: 7.6E-60 score: 200.5
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 23..150 score: 70.315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..177
None	No IPR available	PANTHER	PTHR31165:SF36	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	coord: 10..156
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 10..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G012010	Cla021516	Watermelon (97103) v1	cgybwmB217
CsGy3G012010	Cla005972	Watermelon (97103) v1	cgybwmB207
CsGy3G012010	Csa3G134980	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G012010	MELO3C006417	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G012010	ClCG07G001110	Watermelon (Charleston Gray)	cgybwcgB238
CsGy3G012010	CSPI03G11880	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G012010	CmoCh19G001060	Cucurbita moschata (Rifu)	cgybcmoB357
CsGy3G012010	Lsi05G017360	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G012010	Lsi05G010250	Bottle gourd (USVL1VR-Ls)	cgyblsiB204
CsGy3G012010	Cp4.1LG15g00850	Cucurbita pepo (Zucchini)	cgybcpeB343
CsGy3G012010	MELO3C006417.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G012010	MELO3C012877.2	Melon (DHL92) v3.6.1	cgybmedB184
CsGy3G012010	CsaV3_3G012030	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G012010	CsaV3_3G022180	Cucumber (Chinese Long) v3	cgybcucB122
CsGy3G012010	Cla97C05G085040	Watermelon (97103) v2	cgybwmbB196
CsGy3G012010	Cla97C07G129380	Watermelon (97103) v2	cgybwmbB231
CsGy3G012010	Bhi01G000519	Wax gourd	cgybwgoB261
CsGy3G012010	Carg08963	Silver-seed gourd	carcgybB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G012010	Cucumber (Gy14) v2	cgybcgybB045
CsGy3G012010	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G012010	Cucurbita maxima (Rimu)	cgybcmaB345
CsGy3G012010	Cucurbita maxima (Rimu)	cgybcmaB386
CsGy3G012010	Cucurbita maxima (Rimu)	cgybcmaB391
CsGy3G012010	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G012010	Cucurbita maxima (Rimu)	cgybcmaB454
CsGy3G012010	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G012010	Cucurbita moschata (Rifu)	cgybcmoB317
CsGy3G012010	Cucurbita moschata (Rifu)	cgybcmoB362
CsGy3G012010	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G012010	Cucurbita moschata (Rifu)	cgybcmoB421
CsGy3G012010	Cucurbita pepo (Zucchini)	cgybcpeB302
CsGy3G012010	Cucurbita pepo (Zucchini)	cgybcpeB354
CsGy3G012010	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G012010	Cucurbita pepo (Zucchini)	cgybcpeB432
CsGy3G012010	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G012010	Cucumber (Chinese Long) v2	cgybcuB101
CsGy3G012010	Cucumber (Chinese Long) v2	cgybcuB117
CsGy3G012010	Bottle gourd (USVL1VR-Ls)	cgyblsiB136
CsGy3G012010	Melon (DHL92) v3.5.1	cgybmeB183
CsGy3G012010	Melon (DHL92) v3.5.1	cgybmeB195
CsGy3G012010	Melon (DHL92) v3.6.1	cgybmedB197
CsGy3G012010	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G012010	Watermelon (Charleston Gray)	cgybwcgB230
CsGy3G012010	Watermelon (97103) v1	cgybwmB262
CsGy3G012010	Wild cucumber (PI 183967)	cgybcpiB100
CsGy3G012010	Wild cucumber (PI 183967)	cgybcpiB118
CsGy3G012010	Silver-seed gourd	carcgybB0251
CsGy3G012010	Silver-seed gourd	carcgybB0245
CsGy3G012010	Silver-seed gourd	carcgybB0948
CsGy3G012010	Silver-seed gourd	carcgybB1059
CsGy3G012010	Cucumber (Chinese Long) v3	cgybcucB109
CsGy3G012010	Watermelon (97103) v2	cgybwmbB222
CsGy3G012010	Wax gourd	cgybwgoB238
CsGy3G012010	Wax gourd	cgybwgoB293