MELO3C006417 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006417
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLight-dependent short hypocotyls 1
Locationchr6 : 3105094 .. 3105633 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCACTTCAAAACGACACCGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCGAGCCCTTCCGGTCCATGCACCTGCCCATTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGGAAGAGGCCGTTGGGTCTGCCGCCGCCGCCGCCGCGCTCGGCTGCTAGCAGTTGTAGTGAAAGTACAATAAGTCAGTTGAAGTTATAA

mRNA sequence

ATGGATTCACTTCAAAACGACACCGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCGAGCCCTTCCGGTCCATGCACCTGCCCATTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGGAAGAGGCCGTTGGGTCTGCCGCCGCCGCCGCCGCGCTCGGCTGCTAGCAGTTGTAGTGAAAGTACAATAAGTCAGTTGAAGTTATAA

Coding sequence (CDS)

ATGGATTCACTTCAAAACGACACCGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCGAGCCCTTCCGGTCCATGCACCTGCCCATTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGGAAGAGGCCGTTGGGTCTGCCGCCGCCGCCGCCGCGCTCGGCTGCTAGCAGTTGTAGTGAAAGTACAATAAGTCAGTTGAAGTTATAA

Protein sequence

MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL*
Homology
[Close]
BLAST of MELO3C006417 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.2e-66
Identity = 116/155 (74.84%), Postives = 131/155 (84.52%), Query Frame = 1 

Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCS 171
           D QAKARGISY+KKKRKRP   PP PP   A S S
Sbjct: 161 DSQAKARGISYEKKKRKRP--PPPLPPAQPAISSS 193

[Close]
BLAST of MELO3C006417 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.6e-65
Identity = 115/176 (65.34%), Postives = 137/176 (77.84%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ +CPF+GHP+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGISYQKKKRKRPL-----------GLPPPPPRSAASSCSESTISQ 177
           REVR+ QA+ARGISY+KKKRK+P            G PPPP  SA+     S   Q
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTSASPQ 244

[Close]
BLAST of MELO3C006417 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.6e-65
Identity = 115/176 (65.34%), Postives = 137/176 (77.84%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ +CPF+GHP+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGISYQKKKRKRPL-----------GLPPPPPRSAASSCSESTISQ 177
           REVR+ QA+ARGISY+KKKRK+P            G PPPP  SA+     S   Q
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTSASPQ 244

[Close]
BLAST of MELO3C006417 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-64
Identity = 112/165 (67.88%), Postives = 135/165 (81.82%), Query Frame = 1 

Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 180
           RD+Q+KARG+SY+KKKRKRPL     P  S +SS + ++  Q ++
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL-----PSSSTSSSSAVASHQQFQM 205

[Close]
BLAST of MELO3C006417 vs. Swiss-Prot
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.0e-62
Identity = 109/154 (70.78%), Postives = 128/154 (83.12%), Query Frame = 1 

Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSN 74
           S++  + SRYE+QKRRDW +FG Y+ NH PPL+LARC+GAHV+EFLRYLDQFGKTK+H+ 
Sbjct: 32  SAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAP 91

Query: 75  LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
            CPFFGHP+P  PC CPLRQAWGSLDALVGRLRAAYEE+GG  E NPFGAR VR+YLREV
Sbjct: 92  ACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREV 151

Query: 135 RDLQAKARGISYQKKKRKRPLGLPPPPPRSAASS 169
           R+ QA+ARG+SY+KKKRK+     PP P SAA++
Sbjct: 152 REHQARARGVSYEKKKRKK-----PPHPSSAAAA 180

[Close]
BLAST of MELO3C006417 vs. TrEMBL
Match: A0A0A0L4D7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134980 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.1e-94
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 180
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 177

[Close]
BLAST of MELO3C006417 vs. TrEMBL
Match: V4S3W7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005901mg PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-67
Identity = 118/152 (77.63%), Postives = 133/152 (87.50%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSS+TTLSRYENQKRRDW +FG Y+ NH PPL+L RC+GAHV+EFLRYLDQFGKTK+
Sbjct: 46  PSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKV 105

Query: 72  HSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EEHGG  E NPFGAR VR+YL
Sbjct: 106 HTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYL 165

Query: 132 REVRDLQAKARGISYQKKKRKRPLGLPPPPPR 164
           REVRD QAKARGISY+KKKRKRP   P P P+
Sbjct: 166 REVRDSQAKARGISYEKKKRKRPPQQPQPQPQ 197

[Close]
BLAST of MELO3C006417 vs. TrEMBL
Match: A0A067EQW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037966mg PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-67
Identity = 118/152 (77.63%), Postives = 133/152 (87.50%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSS+TTLSRYENQKRRDW +FG Y+ NH PPL+L RC+GAHV+EFLRYLDQFGKTK+
Sbjct: 46  PSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKV 105

Query: 72  HSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EEHGG  E NPFGAR VR+YL
Sbjct: 106 HTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYL 165

Query: 132 REVRDLQAKARGISYQKKKRKRPLGLPPPPPR 164
           REVRD QAKARGISY+KKKRKRP   P P P+
Sbjct: 166 REVRDSQAKARGISYEKKKRKRPPQQPQPQPQ 197

[Close]
BLAST of MELO3C006417 vs. TrEMBL
Match: V7BHB5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G108200g PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.6e-67
Identity = 119/155 (76.77%), Postives = 136/155 (87.74%), Query Frame = 1 

Query: 13  TPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIH 72
           +P SSSTTLSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H
Sbjct: 39  SPPSSSTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVH 98

Query: 73  SNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLR 132
           ++LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  E NPFGAR VR+YLR
Sbjct: 99  THLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLR 158

Query: 133 EVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAAS 168
           EVRD QAKARGISY+KKKRKRP   PP PP + AS
Sbjct: 159 EVRDSQAKARGISYEKKKRKRPQHPPPLPPSNNAS 193

[Close]
BLAST of MELO3C006417 vs. TrEMBL
Match: A0A078JW20_BRANA (BnaCnng65050D protein OS=Brassica napus GN=BnaCnng65050D PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 9.6e-67
Identity = 118/153 (77.12%), Postives = 135/153 (88.24%), Query Frame = 1 

Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNL 75
           S++T LSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+ L
Sbjct: 40  SATTQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQL 99

Query: 76  CPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P  PCTCPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 100 CPFFGHPNPPAPCTCPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 159

Query: 136 DLQAKARGISYQKKKRKRPLGLPPPPPRSAASS 169
           D QAKARGISY+KKKRKRP   P PPP S  SS
Sbjct: 160 DSQAKARGISYEKKKRKRPPPTPLPPPHSVISS 192

[Close]
BLAST of MELO3C006417 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-67
Identity = 116/155 (74.84%), Postives = 131/155 (84.52%), Query Frame = 1 

Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCS 171
           D QAKARGISY+KKKRKRP   PP PP   A S S
Sbjct: 161 DSQAKARGISYEKKKRKRP--PPPLPPAQPAISSS 193

[Close]
BLAST of MELO3C006417 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-65
Identity = 112/165 (67.88%), Postives = 135/165 (81.82%), Query Frame = 1 

Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 180
           RD+Q+KARG+SY+KKKRKRPL     P  S +SS + ++  Q ++
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL-----PSSSTSSSSAVASHQQFQM 205

[Close]
BLAST of MELO3C006417 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-59
Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 1 

Query: 2   DSLQNDTVIEPTP-----SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHV 61
           DS ++D V    P     SS   T SRYE+QKRRDW +F  Y+ NH PPLAL+RC+GAHV
Sbjct: 5   DSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHV 64

Query: 62  VEFLRYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGN 121
           +EFL+YLDQFGKTK+H   CP+FGH  P  PC+CPL+QAWGSLDAL+GRLRAAYEE+GG 
Sbjct: 65  IEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGR 124

Query: 122 AETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            ++NPF AR VR+YLREVR+ QAKARGI Y+KKKRKRP
Sbjct: 125 PDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]
BLAST of MELO3C006417 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 218.0 bits (554), Expect = 4.7e-57
Identity = 103/167 (61.68%), Postives = 126/167 (75.45%), Query Frame = 1 

Query: 6   NDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYL 65
           N ++   TPSS S+  + SRYENQKRRDW +F  Y+ NH PPL+LA C+GAHV++FLRYL
Sbjct: 14  NTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYL 73

Query: 66  DQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFG 125
           DQFGKTK+H   C FFG P+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  ET+PFG
Sbjct: 74  DQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFG 133

Query: 126 ARPVRVYLREVRDLQAKARGISYQKKKRK---------RPLGLPPPP 162
           +R VR++LREVRD QAK+RG+SY+KK+++         +P   PP P
Sbjct: 134 SRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLP 180

[Close]
BLAST of MELO3C006417 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVE 60
           MD + +     P  S+  T  + SRYENQKRRDW +F  Y+ NH PPL+L  C+GAHV+E
Sbjct: 1   MDLISHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLE 60

Query: 61  FLRYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAE 120
           FLRYLDQFGKTK+H   C FFG P+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  E
Sbjct: 61  FLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPE 120

Query: 121 TNPFGARPVRVYLREVRDLQAKARGISYQKKK----RKRPLGLPP 160
            NPFG+R VR++LREVRD QAKARG+SY+KK+    R++P   PP
Sbjct: 121 ANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165

[Close]
BLAST of MELO3C006417 vs. NCBI nr
Match: gi|659076115|ref|XP_008438509.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 8.5e-101
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 180
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 179

[Close]
BLAST of MELO3C006417 vs. NCBI nr
Match: gi|449433247|ref|XP_004134409.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 180
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 177

[Close]
BLAST of MELO3C006417 vs. NCBI nr
Match: gi|951024213|ref|XP_014513351.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 263.1 bits (671), Expect = 3.6e-67
Identity = 120/154 (77.92%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGLPPPPPRSAAS 168
           VRD QAKARGISY+KKKRKRP   PP PP + AS
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPPLPPPNNAS 194

[Close]
BLAST of MELO3C006417 vs. NCBI nr
Match: gi|567854261|ref|XP_006420250.1| (hypothetical protein CICLE_v10005901mg [Citrus clementina])

HSP 1 Score: 262.7 bits (670), Expect = 4.7e-67
Identity = 118/152 (77.63%), Postives = 133/152 (87.50%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSS+TTLSRYENQKRRDW +FG Y+ NH PPL+L RC+GAHV+EFLRYLDQFGKTK+
Sbjct: 46  PSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKV 105

Query: 72  HSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EEHGG  E NPFGAR VR+YL
Sbjct: 106 HTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYL 165

Query: 132 REVRDLQAKARGISYQKKKRKRPLGLPPPPPR 164
           REVRD QAKARGISY+KKKRKRP   P P P+
Sbjct: 166 REVRDSQAKARGISYEKKKRKRPPQQPQPQPQ 197

[Close]
BLAST of MELO3C006417 vs. NCBI nr
Match: gi|951024210|ref|XP_014513350.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 262.3 bits (669), Expect = 6.2e-67
Identity = 120/153 (78.43%), Postives = 136/153 (88.89%), Query Frame = 1 

Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGLPP-PPPRSA 166
           VRD QAKARGISY+KKKRKRP   PP PPP +A
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPPLPPPNNA 193

The following BLAST results are available for this feature:
BLAST of MELO3C006417 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH4_ARATH5.2e-6674.84Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ... [more]
G1L6_ORYSI2.6e-6565.34Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1[more]
G1L6_ORYSJ2.6e-6565.34Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1[more]
LSH3_ARATH2.9e-6467.88Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ... [more]
G1L5_ORYSJ6.0e-6270.78Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1[more]
BLAST of MELO3C006417 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4D7_CUCSA7.1e-9494.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134980 PE=4 SV=1[more]
V4S3W7_9ROSI3.3e-6777.63Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005901mg PE=4 SV=1[more]
A0A067EQW0_CITSI3.3e-6777.63Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037966mg PE=4 SV=1[more]
V7BHB5_PHAVU5.6e-6776.77Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G108200g PE=4 SV=1[more]
A0A078JW20_BRANA9.6e-6777.12BnaCnng65050D protein OS=Brassica napus GN=BnaCnng65050D PE=4 SV=1[more]
BLAST of MELO3C006417 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23290.22.9e-6774.84 Protein of unknown function (DUF640)[more]
AT2G31160.11.6e-6567.88 Protein of unknown function (DUF640)[more]
AT1G07090.13.9e-5966.46 Protein of unknown function (DUF640)[more]
AT3G04510.14.7e-5761.68 Protein of unknown function (DUF640)[more]
AT5G28490.11.8e-5662.42 Protein of unknown function (DUF640)[more]
BLAST of MELO3C006417 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076115|ref|XP_008438509.1|8.5e-101100.00PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo][more]
gi|449433247|ref|XP_004134409.1|1.0e-9394.97PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus][more]
gi|951024213|ref|XP_014513351.1|3.6e-6777.92PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 [Vigna radiata ... [more]
gi|567854261|ref|XP_006420250.1|4.7e-6777.63hypothetical protein CICLE_v10005901mg [Citrus clementina][more]
gi|951024210|ref|XP_014513350.1|6.2e-6778.43PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Vigna radiata ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010492 maintenance of shoot apical meristem identity
biological_process GO:0010199 organ boundary specification between lateral organs and the meristem
biological_process GO:0048441 petal development
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0048834 specification of petal number
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0048439 flower morphogenesis
biological_process GO:0010014 meristem initiation
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0048438 floral whorl development
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006417T1MELO3C006417T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 17..136
score: 1.4
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 23..150
score: 72
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 5..154
score: 3.9E
NoneNo IPR availablePANTHERPTHR31165:SF13PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATEDcoord: 5..154
score: 3.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006417Csa3G134980Cucumber (Chinese Long) v2cumeB236
MELO3C006417Csa3G383760Cucumber (Chinese Long) v2cumeB240
MELO3C006417Cla021516Watermelon (97103) v1mewmB461
MELO3C006417Cla005972Watermelon (97103) v1mewmB459
MELO3C006417ClCG07G001100Watermelon (Charleston Gray)mewcgB445
MELO3C006417Cla97C07G129380Watermelon (97103) v2mewmbB451
MELO3C006417Cla97C05G085040Watermelon (97103) v2mewmbB434
MELO3C006417Bhi01G000519Wax gourdmewgoB534
MELO3C006417CSPI03G22470Wild cucumber (PI 183967)cpimeB239
MELO3C006417CSPI03G11880Wild cucumber (PI 183967)cpimeB230
MELO3C006417Cucsa.255460Cucumber (Gy14) v1cgymeB439
MELO3C006417CmaCh19G000940Cucurbita maxima (Rimu)cmameB482
MELO3C006417CmoCh02G017850Cucurbita moschata (Rifu)cmomeB568
MELO3C006417Lsi05G017360Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006417Lsi05G010230Bottle gourd (USVL1VR-Ls)lsimeB382
MELO3C006417Cp4.1LG05g01210Cucurbita pepo (Zucchini)cpemeB702
MELO3C006417CsGy3G012010Cucumber (Gy14) v2cgybmeB200
MELO3C006417Carg08963Silver-seed gourdcarmeB0780
MELO3C006417Carg16881Silver-seed gourdcarmeB0749
MELO3C006417CsaV3_3G012030Cucumber (Chinese Long) v3cucmeB236
MELO3C006417CsaV3_3G022180Cucumber (Chinese Long) v3cucmeB245
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C006417MELO3C012877Melon (DHL92) v3.5.1memeB140
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006417Wild cucumber (PI 183967)cpimeB144
MELO3C006417Cucumber (Chinese Long) v2cumeB145
MELO3C006417Watermelon (Charleston Gray)mewcgB427
MELO3C006417Watermelon (Charleston Gray)mewcgB441
MELO3C006417Watermelon (97103) v1mewmB486
MELO3C006417Cucurbita pepo (Zucchini)cpemeB143
MELO3C006417Cucurbita pepo (Zucchini)cpemeB316
MELO3C006417Cucurbita pepo (Zucchini)cpemeB585
MELO3C006417Cucurbita pepo (Zucchini)cpemeB813
MELO3C006417Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006417Cucumber (Gy14) v2cgybmeB126
MELO3C006417Silver-seed gourdcarmeB0236
MELO3C006417Silver-seed gourdcarmeB0240
MELO3C006417Silver-seed gourdcarmeB0941
MELO3C006417Silver-seed gourdcarmeB1050
MELO3C006417Cucumber (Chinese Long) v3cucmeB147
MELO3C006417Watermelon (97103) v2mewmbB448
MELO3C006417Wax gourdmewgoB514
MELO3C006417Wax gourdmewgoB552
MELO3C006417Melon (DHL92) v3.5.1memeB147
MELO3C006417Cucumber (Gy14) v1cgymeB625
MELO3C006417Cucurbita maxima (Rimu)cmameB242
MELO3C006417Cucurbita maxima (Rimu)cmameB344
MELO3C006417Cucurbita maxima (Rimu)cmameB580
MELO3C006417Cucurbita maxima (Rimu)cmameB763
MELO3C006417Cucurbita maxima (Rimu)cmameB850
MELO3C006417Cucurbita moschata (Rifu)cmomeB230
MELO3C006417Cucurbita moschata (Rifu)cmomeB337
MELO3C006417Cucurbita moschata (Rifu)cmomeB474
MELO3C006417Cucurbita moschata (Rifu)cmomeB832
MELO3C006417Cucurbita moschata (Rifu)cmomeB755