Csa3G134980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G134980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLight-dependent short hypocotyls 1; contains IPR006936 (Domain of unknown function DUF640)
LocationChr3 : 9117122 .. 9117662 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

mRNA sequence

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

Coding sequence (CDS)

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

Protein sequence

MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL*
Homology
[Close]
BLAST of Csa3G134980 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.4e-63
Identity = 111/152 (73.03%), Postives = 129/152 (84.87%), Query Frame = 1 

Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGISYQKKKRKRPLGP-PPSRSGASS 167
           D QAKARGISY+KKKRKRP  P PP++   SS
Sbjct: 161 DSQAKARGISYEKKKRKRPPPPLPPAQPAISS 192

[Close]
BLAST of Csa3G134980 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-62
Identity = 110/163 (67.48%), Postives = 133/163 (81.60%), Query Frame = 1 

Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           RD+Q+KARG+SY+KKKRKRPL   PS S +SS +  +  Q ++
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL---PSSSTSSSSAVASHQQFQM 205

[Close]
BLAST of Csa3G134980 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-62
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ N  PPL+L+RC+GAHV++FL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ +CPF+GHP+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGISYQKKKRKRPL------------GPPPSRSGASSCSETTMS 174
           REVR+ QA+ARGISY+KKKRK+P              PPP    AS   +T+ S
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTSAS 242

[Close]
BLAST of Csa3G134980 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-62
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 1 

Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ N  PPL+L+RC+GAHV++FL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ +CPF+GHP+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGISYQKKKRKRPL------------GPPPSRSGASSCSETTMS 174
           REVR+ QA+ARGISY+KKKRK+P              PPP    AS   +T+ S
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTSAS 242

[Close]
BLAST of Csa3G134980 vs. Swiss-Prot
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-59
Identity = 105/151 (69.54%), Postives = 125/151 (82.78%), Query Frame = 1 

Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           S++  + SRYE+QKRRDW +FG Y+ N  PPL+LARC+GAHV++FLRYLDQFGKTK+H+ 
Sbjct: 32  SAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAP 91

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
            CPFFGHP+P   C CPLRQAWGSLDALVGRLRAAYEE+GG  E NPFGAR VR+YLREV
Sbjct: 92  ACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREV 151

Query: 135 RDLQAKARGISYQKKKRKRPLGPPPSRSGAS 166
           R+ QA+ARG+SY+KKKRK+P  P PS + A+
Sbjct: 152 REHQARARGVSYEKKKRKKP--PHPSSAAAA 180

[Close]
BLAST of Csa3G134980 vs. TrEMBL
Match: A0A0A0L4D7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134980 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.2e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177

[Close]
BLAST of Csa3G134980 vs. TrEMBL
Match: A0A0S3SPV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G142700 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.4e-64
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = 1 

Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLD+FGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDEFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGPPP 160
           VRD QAKARGISY+KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]
BLAST of Csa3G134980 vs. TrEMBL
Match: V7BHB5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G108200g PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-64
Identity = 113/147 (76.87%), Postives = 130/147 (88.44%), Query Frame = 1 

Query: 13  TPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIH 72
           +P SSSTTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H
Sbjct: 39  SPPSSSTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVH 98

Query: 73  SNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLR 132
           ++LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  E NPFGAR VR+YLR
Sbjct: 99  THLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLR 158

Query: 133 EVRDLQAKARGISYQKKKRKRPLGPPP 160
           EVRD QAKARGISY+KKKRKRP  PPP
Sbjct: 159 EVRDSQAKARGISYEKKKRKRPQHPPP 185

[Close]
BLAST of Csa3G134980 vs. TrEMBL
Match: V7BDG2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G108200g PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-64
Identity = 113/147 (76.87%), Postives = 130/147 (88.44%), Query Frame = 1 

Query: 13  TPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIH 72
           +P SSSTTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H
Sbjct: 39  SPPSSSTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVH 98

Query: 73  SNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLR 132
           ++LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  E NPFGAR VR+YLR
Sbjct: 99  THLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLR 158

Query: 133 EVRDLQAKARGISYQKKKRKRPLGPPP 160
           EVRD QAKARGISY+KKKRKRP  PPP
Sbjct: 159 EVRDSQAKARGISYEKKKRKRPQHPPP 185

[Close]
BLAST of Csa3G134980 vs. TrEMBL
Match: A0A068TV89_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026324001 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.8e-64
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 1 

Query: 9   VIEPTPSSSS----TTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLD 68
           +  PTP+SSS    TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLD
Sbjct: 17  IASPTPASSSAASPTTLSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLD 76

Query: 69  QFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGA 128
           QFGKTK+H+ LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  ETNPFGA
Sbjct: 77  QFGKTKVHTQLCPFFGHPNPPSPCPCPLRQAWGSLDALIGRLRAAYEENGGKPETNPFGA 136

Query: 129 RPVRVYLREVRDLQAKARGISYQKKKRKRPLG------PPPSRS 163
           R VR+YLREVRD QAKARGISY+KKKRKRP        PPPS S
Sbjct: 137 RAVRLYLREVRDSQAKARGISYEKKKRKRPQQQQQQALPPPSSS 180

[Close]
BLAST of Csa3G134980 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-64
Identity = 111/152 (73.03%), Postives = 129/152 (84.87%), Query Frame = 1 

Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGISYQKKKRKRPLGP-PPSRSGASS 167
           D QAKARGISY+KKKRKRP  P PP++   SS
Sbjct: 161 DSQAKARGISYEKKKRKRPPPPLPPAQPAISS 192

[Close]
BLAST of Csa3G134980 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 240.7 bits (613), Expect = 6.7e-64
Identity = 110/163 (67.48%), Postives = 133/163 (81.60%), Query Frame = 1 

Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           RD+Q+KARG+SY+KKKRKRPL   PS S +SS +  +  Q ++
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL---PSSSTSSSSAVASHQQFQM 205

[Close]
BLAST of Csa3G134980 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 217.6 bits (553), Expect = 6.1e-57
Identity = 102/158 (64.56%), Postives = 121/158 (76.58%), Query Frame = 1 

Query: 2   DSLQNDTVIEPTP-----SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHV 61
           DS ++D V    P     SS   T SRYE+QKRRDW +F  Y+ N  PPLAL+RC+GAHV
Sbjct: 5   DSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHV 64

Query: 62  VDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN 121
           ++FL+YLDQFGKTK+H   CP+FGH  P   C+CPL+QAWGSLDAL+GRLRAAYEE+GG 
Sbjct: 65  IEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGR 124

Query: 122 AETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            ++NPF AR VR+YLREVR+ QAKARGI Y+KKKRKRP
Sbjct: 125 PDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]
BLAST of Csa3G134980 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 98/149 (65.77%), Postives = 119/149 (79.87%), Query Frame = 1 

Query: 6   NDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYL 65
           N ++   TPSS S+  + SRYENQKRRDW +F  Y+ N  PPL+LA C+GAHV+DFLRYL
Sbjct: 14  NTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYL 73

Query: 66  DQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFG 125
           DQFGKTK+H   C FFG P+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  ET+PFG
Sbjct: 74  DQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFG 133

Query: 126 ARPVRVYLREVRDLQAKARGISYQKKKRK 153
           +R VR++LREVRD QAK+RG+SY+KK+++
Sbjct: 134 SRSVRIFLREVRDFQAKSRGVSYEKKRKR 162

[Close]
BLAST of Csa3G134980 vs. TAIR10
Match: AT5G58500.1 (AT5G58500.1 Protein of unknown function (DUF640))

HSP 1 Score: 211.1 bits (536), Expect = 5.7e-55
Identity = 98/152 (64.47%), Postives = 119/152 (78.29%), Query Frame = 1 

Query: 4   LQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYL 63
           ++ +T  +   SSSS+  SRYE+QKRRDW +F  Y+ N  PPL L+RC+GAHV++FL+YL
Sbjct: 1   MEGETAAKAAASSSSSP-SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYL 60

Query: 64  DQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN-AETNPF 123
           DQFGKTK+H+  CPFFG P+P   CTCPL+QAWGSLDAL+GRLRAA+EE GG   E+NPF
Sbjct: 61  DQFGKTKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPF 120

Query: 124 GARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            A+ VR+YL+EVR  QAKARGI Y KKKRKRP
Sbjct: 121 AAKAVRIYLKEVRQTQAKARGIPYDKKKRKRP 151

[Close]
BLAST of Csa3G134980 vs. NCBI nr
Match: gi|449433247|ref|XP_004134409.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 4.6e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177

[Close]
BLAST of Csa3G134980 vs. NCBI nr
Match: gi|659076115|ref|XP_008438509.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 1 

Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 178
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 179

[Close]
BLAST of Csa3G134980 vs. NCBI nr
Match: gi|951024213|ref|XP_014513351.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 253.4 bits (646), Expect = 2.8e-64
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 1 

Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGPPP 160
           VRD QAKARGISY+KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]
BLAST of Csa3G134980 vs. NCBI nr
Match: gi|951024210|ref|XP_014513350.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 253.4 bits (646), Expect = 2.8e-64
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 1 

Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGPPP 160
           VRD QAKARGISY+KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]
BLAST of Csa3G134980 vs. NCBI nr
Match: gi|965608300|dbj|BAT94791.1| (hypothetical protein VIGAN_08142700 [Vigna angularis var. angularis])

HSP 1 Score: 252.3 bits (643), Expect = 6.3e-64
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = 1 

Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLD+FGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDEFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGPPP 160
           VRD QAKARGISY+KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

The following BLAST results are available for this feature:
BLAST of Csa3G134980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH4_ARATH2.4e-6373.03Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ... [more]
LSH3_ARATH1.2e-6267.48Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ... [more]
G1L6_ORYSJ2.0e-6263.22Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1[more]
G1L6_ORYSI2.0e-6263.22Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1[more]
G1L5_ORYSJ1.2e-5969.54Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1[more]
BLAST of Csa3G134980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4D7_CUCSA3.2e-99100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134980 PE=4 SV=1[more]
A0A0S3SPV5_PHAAN4.4e-6477.40Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G142700 PE=... [more]
V7BHB5_PHAVU5.8e-6476.87Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G108200g PE=4 SV=1[more]
V7BDG2_PHAVU5.8e-6476.87Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G108200g PE=4 SV=1[more]
A0A068TV89_COFCA9.8e-6472.56Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026324001 PE=4 SV=1[more]
BLAST of Csa3G134980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23290.21.4e-6473.03 Protein of unknown function (DUF640)[more]
AT2G31160.16.7e-6467.48 Protein of unknown function (DUF640)[more]
AT1G07090.16.1e-5764.56 Protein of unknown function (DUF640)[more]
AT3G04510.12.0e-5565.77 Protein of unknown function (DUF640)[more]
AT5G58500.15.7e-5564.47 Protein of unknown function (DUF640)[more]
BLAST of Csa3G134980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433247|ref|XP_004134409.1|4.6e-99100.00PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus][more]
gi|659076115|ref|XP_008438509.1|1.0e-9394.97PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo][more]
gi|951024213|ref|XP_014513351.1|2.8e-6478.08PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 [Vigna radiata ... [more]
gi|951024210|ref|XP_014513350.1|2.8e-6478.08PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Vigna radiata ... [more]
gi|965608300|dbj|BAT94791.1|6.3e-6477.40hypothetical protein VIGAN_08142700 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0010492 maintenance of shoot apical meristem identity
biological_process GO:0010199 organ boundary specification between lateral organs and the meristem
biological_process GO:0048441 petal development
biological_process GO:0048834 specification of petal number
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0048439 flower morphogenesis
biological_process GO:0010014 meristem initiation
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0048438 floral whorl development
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G134980.1Csa3G134980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 17..136
score: 1.1
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 23..150
score: 70
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 5..162
score: 1.3E
NoneNo IPR availablePANTHERPTHR31165:SF13PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATEDcoord: 5..162
score: 1.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G134980Cla021516Watermelon (97103) v1cuwmB233
Csa3G134980Cla005972Watermelon (97103) v1cuwmB221
Csa3G134980MELO3C012877Melon (DHL92) v3.5.1cumeB219
Csa3G134980MELO3C006417Melon (DHL92) v3.5.1cumeB236
Csa3G134980ClCG07G001100Watermelon (Charleston Gray)cuwcgB255
Csa3G134980Lsi05G010230Bottle gourd (USVL1VR-Ls)culsiB215
Csa3G134980Lsi05G017360Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G134980MELO3C012877.2Melon (DHL92) v3.6.1cumedB205
Csa3G134980MELO3C006417.2Melon (DHL92) v3.6.1cumedB223
Csa3G134980Cla97C05G085040Watermelon (97103) v2cuwmbB204
Csa3G134980Cla97C07G129380Watermelon (97103) v2cuwmbB241
Csa3G134980Bhi01G000519Wax gourdcuwgoB273
Csa3G134980CSPI03G11880Wild cucumber (PI 183967)cpicuB120
Csa3G134980CSPI03G22470Wild cucumber (PI 183967)cpicuB127
Csa3G134980Cucsa.255460Cucumber (Gy14) v1cgycuB366
Csa3G134980CmaCh19G000940Cucurbita maxima (Rimu)cmacuB518
Csa3G134980CmoCh02G017850Cucurbita moschata (Rifu)cmocuB585
Csa3G134980Cp4.1LG05g01210Cucurbita pepo (Zucchini)cpecuB724
Csa3G134980CsGy3G012010Cucumber (Gy14) v2cgybcuB109
Csa3G134980Carg08963Silver-seed gourdcarcuB0795
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa3G134980Csa3G383760Cucumber (Chinese Long) v2cucuB087
The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G134980Melon (DHL92) v3.6.1cumedB220
Csa3G134980Silver-seed gourdcarcuB0256
Csa3G134980Silver-seed gourdcarcuB0262
Csa3G134980Silver-seed gourdcarcuB0975
Csa3G134980Silver-seed gourdcarcuB1093
Csa3G134980Watermelon (97103) v2cuwmbB231
Csa3G134980Wax gourdcuwgoB251
Csa3G134980Wax gourdcuwgoB303
Csa3G134980Cucumber (Chinese Long) v2cucuB050
Csa3G134980Cucumber (Gy14) v1cgycuB537
Csa3G134980Cucurbita maxima (Rimu)cmacuB253
Csa3G134980Cucurbita maxima (Rimu)cmacuB356
Csa3G134980Cucurbita maxima (Rimu)cmacuB597
Csa3G134980Cucurbita maxima (Rimu)cmacuB814
Csa3G134980Cucurbita maxima (Rimu)cmacuB885
Csa3G134980Cucurbita moschata (Rifu)cmocuB239
Csa3G134980Cucurbita moschata (Rifu)cmocuB346
Csa3G134980Cucurbita moschata (Rifu)cmocuB509
Csa3G134980Cucurbita moschata (Rifu)cmocuB806
Csa3G134980Cucurbita moschata (Rifu)cmocuB872
Csa3G134980Melon (DHL92) v3.5.1cumeB231
Csa3G134980Watermelon (Charleston Gray)cuwcgB222
Csa3G134980Watermelon (Charleston Gray)cuwcgB246
Csa3G134980Watermelon (97103) v1cuwmB279
Csa3G134980Cucurbita pepo (Zucchini)cpecuB134
Csa3G134980Cucurbita pepo (Zucchini)cpecuB310
Csa3G134980Cucurbita pepo (Zucchini)cpecuB609
Csa3G134980Cucurbita pepo (Zucchini)cpecuB859
Csa3G134980Bottle gourd (USVL1VR-Ls)culsiB150
Csa3G134980Cucumber (Gy14) v2cgybcuB065