ClCG07G001110 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G001110
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionProtein of unknown function (DUF640) LENGTH=219
LocationCG_Chr07 : 1198226 .. 1198902 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTCTCAAGTAGTAGCAGCCATAACATCATCGTCAACAACAATAACAACAGCATCAACCACCACCAACAAGCTGCAACAACCTCCTCTTCCAGCAGTAGATATGAGAATCAAAAGCGTCGTGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGAGGTGCAGCGGAGCTCACGTCCTCGAATTTCTCAGGTAAATAATAAAACTGCCCTCTCCATCTCACCGTTAACGTAGCTAACATACTACTGTTAGTCAACTATGTAAATCTCGATGTCAAATTATGCAGCAATTGTCTTTCTTTAATTATGGCTGGGGTTGGACAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGTCATTTGCCCTTTCTACGGGTTGCCGAACCCTCCGGCACCGTGTCCGTGCCCTCTTCGGCAAGCGTGGGGGAGCCTCGATGCGTTGGTCGGACGGCTTCGAGCAGCTTTTGAAGAGAATGGTGGGAAACCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCTCAATTGCCTTTGACACAACAAACATCTCATGGTACTACTTCATGA

mRNA sequence

ATGGACTTCTCAAGTAGTAGCAGCCATAACATCATCGTCAACAACAATAACAACAGCATCAACCACCACCAACAAGCTGCAACAACCTCCTCTTCCAGCAGTAGATATGAGAATCAAAAGCGTCGTGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGAGGTGCAGCGGAGCTCACGTCCTCGAATTTCTCAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGTCATTTGCCCTTTCTACGGGTTGCCGAACCCTCCGGCACCGTGTCCGTGCCCTCTTCGGCAAGCGTGGGGGAGCCTCGATGCGTTGGTCGGACGGCTTCGAGCAGCTTTTGAAGAGAATGGTGGGAAACCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCTCAATTGCCTTTGACACAACAAACATCTCATGGTACTACTTCATGA

Coding sequence (CDS)

ATGGACTTCTCAAGTAGTAGCAGCCATAACATCATCGTCAACAACAATAACAACAGCATCAACCACCACCAACAAGCTGCAACAACCTCCTCTTCCAGCAGTAGATATGAGAATCAAAAGCGTCGTGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGAGGTGCAGCGGAGCTCACGTCCTCGAATTTCTCAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGTCATTTGCCCTTTCTACGGGTTGCCGAACCCTCCGGCACCGTGTCCGTGCCCTCTTCGGCAAGCGTGGGGGAGCCTCGATGCGTTGGTCGGACGGCTTCGAGCAGCTTTTGAAGAGAATGGTGGGAAACCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCTCAATTGCCTTTGACACAACAAACATCTCATGGTACTACTTCATGA

Protein sequence

MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTTS
Homology
[Close]
BLAST of ClCG07G001110 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.3e-71
Identity = 127/174 (72.99%), Postives = 143/174 (82.18%), Query Frame = 1 

Query: 12  IVNNNNNSINHH---------QQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSR 71
           I++NN++S+              +++ S++SSRYENQKRRDW TFGQYL NHRPPL+LSR
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 72  CSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 131
           CSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAF
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 132 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTS 177
           EENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  +S
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

[Close]
BLAST of ClCG07G001110 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-69
Identity = 132/173 (76.30%), Postives = 136/173 (78.61%), Query Frame = 1 

Query: 14  NNNNNSINHHQQAATTSSSSS------------RYENQKRRDWKTFGQYLNNHRPPLALS 73
           +N N  I       TTSSSSS            RYENQKRRDW TFGQYL NHRPPL+LS
Sbjct: 15  HNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 74

Query: 74  RCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 133
           RCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLRAA
Sbjct: 75  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 134

Query: 134 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLTQ 174
           FEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 135 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]
BLAST of ClCG07G001110 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-67
Identity = 115/141 (81.56%), Postives = 130/141 (92.20%), Query Frame = 1 

Query: 27  ATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTV 86
           +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHT 
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 87  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 146
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 147 RDLQSKARGISYEKKRKRPPS 168
           R+ Q++ARGISYEKK+++ PS
Sbjct: 192 RETQARARGISYEKKKRKKPS 212

[Close]
BLAST of ClCG07G001110 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-67
Identity = 115/141 (81.56%), Postives = 130/141 (92.20%), Query Frame = 1 

Query: 27  ATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTV 86
           +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHT 
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 87  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 146
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 147 RDLQSKARGISYEKKRKRPPS 168
           R+ Q++ARGISYEKK+++ PS
Sbjct: 192 RETQARARGISYEKKKRKKPS 212

[Close]
BLAST of ClCG07G001110 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.1e-67
Identity = 120/153 (78.43%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 21  NHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGK 80
           N +     T  SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVLEFLRYLDQFGK
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 81  TKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVR 140
           TKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query: 141 LYLREVRDLQSKARGISYEKKRKRPPSQLPLTQ 174
           L+LREVRD Q+KARG+SYEKKRKR   Q P TQ
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]
BLAST of ClCG07G001110 vs. TrEMBL
Match: A0A0A0L7E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383760 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-95
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 1 

Query: 1   MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFSS SSHNII+NNNNN+INH QQ A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSGSSHNIIINNNNNTINH-QQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]
BLAST of ClCG07G001110 vs. TrEMBL
Match: A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.6e-75
Identity = 138/169 (81.66%), Postives = 151/169 (89.35%), Query Frame = 1 

Query: 1   MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MD S+S + ++ V+NN  +      + ++SS+SSRYENQKRRDW TFGQYL NHRPPL+L
Sbjct: 7   MDSSNSENASLNVSNNGTASLASSSSPSSSSTSSRYENQKRRDWNTFGQYLKNHRPPLSL 66

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRA
Sbjct: 67  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 126

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQ 169
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKRPP+Q
Sbjct: 127 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQ 175

[Close]
BLAST of ClCG07G001110 vs. TrEMBL
Match: F6HZL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03530 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73
Identity = 141/174 (81.03%), Postives = 151/174 (86.78%), Query Frame = 1 

Query: 2   DFSSSSSHNIIVNNNNNSINHHQQAATTSSSSS----RYENQKRRDWKTFGQYLNNHRPP 61
           +  SS+S N  +N ++NS      AAT+SSS+S    RYENQKRRDW TFGQYL NHRPP
Sbjct: 6   EMDSSNSENTSINTSSNS-----SAATSSSSASTTPSRYENQKRRDWNTFGQYLKNHRPP 65

Query: 62  LALSRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 121
           L+LSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYG PNPPAPCPCPLRQAWGSLDAL+GR
Sbjct: 66  LSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 125

Query: 122 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLP 171
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKR P Q+P
Sbjct: 126 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRLPQQMP 174

[Close]
BLAST of ClCG07G001110 vs. TrEMBL
Match: A5ARJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036348 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-73
Identity = 141/171 (82.46%), Postives = 150/171 (87.72%), Query Frame = 1 

Query: 5   SSSSHNIIVNNNNNSINHHQQAATTSSSSS----RYENQKRRDWKTFGQYLNNHRPPLAL 64
           SS+S N  +N ++NS      AAT+SSS+S    RYENQKRRDW TFGQYL NHRPPL+L
Sbjct: 3   SSNSENTSINTSSNS-----SAATSSSSASTTPSRYENQKRRDWNTFGQYLKNHRPPLSL 62

Query: 65  SRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 124
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRA
Sbjct: 63  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 122

Query: 125 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLP 171
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKR P Q+P
Sbjct: 123 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRLPQQMP 168

[Close]
BLAST of ClCG07G001110 vs. TrEMBL
Match: A0A0D2Q4B9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G254200 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-73
Identity = 137/173 (79.19%), Postives = 150/173 (86.71%), Query Frame = 1 

Query: 3   FSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSR 62
           FS+S +   + N ++NS        ++SS+SSRYENQKRRDW TFGQYL NHRPPLALSR
Sbjct: 10  FSNSQNGGTLTNVSHNS------GTSSSSTSSRYENQKRRDWNTFGQYLKNHRPPLALSR 69

Query: 63  CSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 122
           CSGAHVLEFLRYLDQFGKTKVHT ICPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAF
Sbjct: 70  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 129

Query: 123 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR--PPSQLPLTQ 174
           EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK+++  PP Q+P  Q
Sbjct: 130 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPPQQIPSLQ 176

[Close]
BLAST of ClCG07G001110 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 267.7 bits (683), Expect = 5.2e-72
Identity = 127/174 (72.99%), Postives = 143/174 (82.18%), Query Frame = 1 

Query: 12  IVNNNNNSINHH---------QQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSR 71
           I++NN++S+              +++ S++SSRYENQKRRDW TFGQYL NHRPPL+LSR
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 72  CSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 131
           CSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAF
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 132 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTS 177
           EENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  +S
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

[Close]
BLAST of ClCG07G001110 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 263.8 bits (673), Expect = 7.5e-71
Identity = 132/173 (76.30%), Postives = 136/173 (78.61%), Query Frame = 1 

Query: 14  NNNNNSINHHQQAATTSSSSS------------RYENQKRRDWKTFGQYLNNHRPPLALS 73
           +N N  I       TTSSSSS            RYENQKRRDW TFGQYL NHRPPL+LS
Sbjct: 15  HNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 74

Query: 74  RCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 133
           RCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLRAA
Sbjct: 75  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 134

Query: 134 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLTQ 174
           FEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 135 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]
BLAST of ClCG07G001110 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 254.6 bits (649), Expect = 4.6e-68
Identity = 120/153 (78.43%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 21  NHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGK 80
           N +     T  SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVLEFLRYLDQFGK
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 81  TKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVR 140
           TKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query: 141 LYLREVRDLQSKARGISYEKKRKRPPSQLPLTQ 174
           L+LREVRD Q+KARG+SYEKKRKR   Q P TQ
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]
BLAST of ClCG07G001110 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 247.7 bits (631), Expect = 5.6e-66
Identity = 121/176 (68.75%), Postives = 135/176 (76.70%), Query Frame = 1 

Query: 14  NNNNNSINHHQQAATTSS-----SSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHV 73
           N+NN + N      T SS     SSSRYENQKRRDW TF QYL NH PPL+L+ CSGAHV
Sbjct: 7   NHNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHV 66

Query: 74  LEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGK 133
           L+FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG 
Sbjct: 67  LDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGA 126

Query: 134 PEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR----------PPSQLPLTQQ 175
           PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR          P SQ PL QQ
Sbjct: 127 PETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQ 182

[Close]
BLAST of ClCG07G001110 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 231.1 bits (588), Expect = 5.4e-61
Identity = 104/138 (75.36%), Postives = 122/138 (88.41%), Query Frame = 1 

Query: 31  SSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTVICPF 90
           ++ SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP+
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 91  YGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQ 150
           +G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 151 SKARGISYE-KKRKRPPS 168
           +KARGI YE KKRKRPP+
Sbjct: 147 AKARGIPYEKKKRKRPPT 164

[Close]
BLAST of ClCG07G001110 vs. NCBI nr
Match: gi|449468688|ref|XP_004152053.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-95
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 1 

Query: 1   MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFSS SSHNII+NNNNN+INH QQ A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSGSSHNIIINNNNNTINH-QQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]
BLAST of ClCG07G001110 vs. NCBI nr
Match: gi|659093192|ref|XP_008447415.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 5.4e-95
Identity = 170/181 (93.92%), Postives = 176/181 (97.24%), Query Frame = 1 

Query: 1   MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MDFSSSSSHNII+N+NNN+INH QQ A TSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL
Sbjct: 1   MDFSSSSSHNIIINHNNNTINH-QQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTT 180
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+HG +
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTHGAS 180

Query: 181 S 182
           S
Sbjct: 181 S 180

[Close]
BLAST of ClCG07G001110 vs. NCBI nr
Match: gi|698458156|ref|XP_009780996.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Nicotiana sylvestris])

HSP 1 Score: 289.7 bits (740), Expect = 3.6e-75
Identity = 141/178 (79.21%), Postives = 156/178 (87.64%), Query Frame = 1 

Query: 4   SSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRC 63
           ++SSSH  + N+NN++I     ++T+SS+SSRYENQKRRDW TFGQYL NHRPPLALSRC
Sbjct: 5   NNSSSH--LNNSNNSNITITSSSSTSSSTSSRYENQKRRDWNTFGQYLKNHRPPLALSRC 64

Query: 64  SGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFE 123
           SGAHVLEFLRYLDQFGKTK+HT ICPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+E
Sbjct: 65  SGAHVLEFLRYLDQFGKTKIHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 124

Query: 124 ENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPP--SQLPLTQQTSHG 179
           ENGGKPE NPFGARAVRLYLREVRDLQSKARG+SYE KKRKRPP   QLP+    S G
Sbjct: 125 ENGGKPETNPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPPLQQLPIPPPPSSG 180

[Close]
BLAST of ClCG07G001110 vs. NCBI nr
Match: gi|1012014685|ref|XP_015948741.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis])

HSP 1 Score: 288.9 bits (738), Expect = 6.2e-75
Identity = 145/190 (76.32%), Postives = 153/190 (80.53%), Query Frame = 1 

Query: 4   SSSSSHNIIVNNNNNSIN---------------HHQQAATTSSSSSRYENQKRRDWKTFG 63
           +++ + NII NNNNNS +                     TTS+SSSRYENQKRRDW TFG
Sbjct: 18  TNNINRNIISNNNNNSSSIVVGGGGSSPSGGGSSSTTTTTTSTSSSRYENQKRRDWNTFG 77

Query: 64  QYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAW 123
           QYL NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYG PNPPAPCPCPLRQAW
Sbjct: 78  QYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 137

Query: 124 GSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPS 178
           GSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKRPP 
Sbjct: 138 GSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPQ 197

[Close]
BLAST of ClCG07G001110 vs. NCBI nr
Match: gi|590715738|ref|XP_007050277.1| (IQ motif and SEC7 domain-containing protein 2 [Theobroma cacao])

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 138/169 (81.66%), Postives = 151/169 (89.35%), Query Frame = 1 

Query: 1   MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60
           MD S+S + ++ V+NN  +      + ++SS+SSRYENQKRRDW TFGQYL NHRPPL+L
Sbjct: 7   MDSSNSENASLNVSNNGTASLASSSSPSSSSTSSRYENQKRRDWNTFGQYLKNHRPPLSL 66

Query: 61  SRCSGAHVLEFLRYLDQFGKTKVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120
           SRCSGAHVLEFLRYLDQFGKTKVHT ICPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRA
Sbjct: 67  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 126

Query: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQ 169
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKRPP+Q
Sbjct: 127 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQ 175

The following BLAST results are available for this feature:
BLAST of ClCG07G001110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH3_ARATH9.3e-7172.99Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ... [more]
LSH4_ARATH1.3e-6976.30Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ... [more]
G1L6_ORYSI2.1e-6781.56Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1[more]
G1L6_ORYSJ2.1e-6781.56Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1[more]
LSH1_ARATH8.1e-6778.43Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ... [more]
BLAST of ClCG07G001110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7E1_CUCSA1.3e-9594.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383760 PE=4 SV=1[more]
A0A061DNN8_THECC9.6e-7581.66IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 P... [more]
F6HZL1_VITVI1.1e-7381.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03530 PE=4 SV=... [more]
A5ARJ1_VITVI1.8e-7382.46Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036348 PE=4 SV=1[more]
A0A0D2Q4B9_GOSRA1.8e-7379.19Uncharacterized protein OS=Gossypium raimondii GN=B456_001G254200 PE=4 SV=1[more]
BLAST of ClCG07G001110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31160.15.2e-7272.99 Protein of unknown function (DUF640)[more]
AT3G23290.27.5e-7176.30 Protein of unknown function (DUF640)[more]
AT5G28490.14.6e-6878.43 Protein of unknown function (DUF640)[more]
AT3G04510.15.6e-6668.75 Protein of unknown function (DUF640)[more]
AT1G07090.15.4e-6175.36 Protein of unknown function (DUF640)[more]
BLAST of ClCG07G001110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449468688|ref|XP_004152053.1|1.9e-9594.48PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus][more]
gi|659093192|ref|XP_008447415.1|5.4e-9593.92PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo][more]
gi|698458156|ref|XP_009780996.1|3.6e-7579.21PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Nicotiana sylvestris... [more]
gi|1012014685|ref|XP_015948741.1|6.2e-7576.32PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis][more]
gi|590715738|ref|XP_007050277.1|1.4e-7481.66IQ motif and SEC7 domain-containing protein 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010492 maintenance of shoot apical meristem identity
biological_process GO:0010199 organ boundary specification between lateral organs and the meristem
biological_process GO:0048441 petal development
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0048834 specification of petal number
biological_process GO:0008150 biological_process
biological_process GO:0009299 mRNA transcription
biological_process GO:0007275 multicellular organism development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009416 response to light stimulus
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G001110.1ClCG07G001110.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 29..148
score: 7.2
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 35..162
score: 82
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 1..178
score: 7.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G001110Cucsa.255460Cucumber (Gy14) v1cgywcgB457
ClCG07G001110CsGy3G012010Cucumber (Gy14) v2cgybwcgB238
ClCG07G001110MELO3C006417.2Melon (DHL92) v3.6.1medwcgB439
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G001110Watermelon (Charleston Gray)wcgwcgB164
ClCG07G001110Watermelon (Charleston Gray)wcgwcgB174
ClCG07G001110Cucumber (Gy14) v1cgywcgB655
ClCG07G001110Cucurbita maxima (Rimu)cmawcgB240
ClCG07G001110Cucurbita maxima (Rimu)cmawcgB333
ClCG07G001110Cucurbita maxima (Rimu)cmawcgB467
ClCG07G001110Cucurbita maxima (Rimu)cmawcgB568
ClCG07G001110Cucurbita maxima (Rimu)cmawcgB749
ClCG07G001110Cucurbita maxima (Rimu)cmawcgB811
ClCG07G001110Cucurbita moschata (Rifu)cmowcgB227
ClCG07G001110Cucurbita moschata (Rifu)cmowcgB331
ClCG07G001110Cucurbita moschata (Rifu)cmowcgB466
ClCG07G001110Cucurbita moschata (Rifu)cmowcgB566
ClCG07G001110Cucurbita moschata (Rifu)cmowcgB750
ClCG07G001110Cucurbita moschata (Rifu)cmowcgB808
ClCG07G001110Wild cucumber (PI 183967)cpiwcgB163
ClCG07G001110Wild cucumber (PI 183967)cpiwcgB264
ClCG07G001110Wild cucumber (PI 183967)cpiwcgB266
ClCG07G001110Cucumber (Chinese Long) v2cuwcgB160
ClCG07G001110Cucumber (Chinese Long) v2cuwcgB255
ClCG07G001110Cucumber (Chinese Long) v2cuwcgB257
ClCG07G001110Melon (DHL92) v3.5.1mewcgB346
ClCG07G001110Melon (DHL92) v3.5.1mewcgB402
ClCG07G001110Melon (DHL92) v3.5.1mewcgB445
ClCG07G001110Watermelon (97103) v1wcgwmB373
ClCG07G001110Watermelon (97103) v1wcgwmB382
ClCG07G001110Watermelon (97103) v1wcgwmB395
ClCG07G001110Cucurbita pepo (Zucchini)cpewcgB150
ClCG07G001110Cucurbita pepo (Zucchini)cpewcgB240
ClCG07G001110Cucurbita pepo (Zucchini)cpewcgB306
ClCG07G001110Cucurbita pepo (Zucchini)cpewcgB569
ClCG07G001110Cucurbita pepo (Zucchini)cpewcgB683
ClCG07G001110Cucurbita pepo (Zucchini)cpewcgB792
ClCG07G001110Bottle gourd (USVL1VR-Ls)lsiwcgB032
ClCG07G001110Bottle gourd (USVL1VR-Ls)lsiwcgB348
ClCG07G001110Bottle gourd (USVL1VR-Ls)lsiwcgB349
ClCG07G001110Cucumber (Gy14) v2cgybwcgB149
ClCG07G001110Cucumber (Gy14) v2cgybwcgB239
ClCG07G001110Melon (DHL92) v3.6.1medwcgB342
ClCG07G001110Melon (DHL92) v3.6.1medwcgB390
ClCG07G001110Silver-seed gourdcarwcgB0224
ClCG07G001110Silver-seed gourdcarwcgB0228
ClCG07G001110Silver-seed gourdcarwcgB0730
ClCG07G001110Silver-seed gourdcarwcgB0760
ClCG07G001110Silver-seed gourdcarwcgB0938
ClCG07G001110Silver-seed gourdcarwcgB1050
ClCG07G001110Cucumber (Chinese Long) v3cucwcgB168
ClCG07G001110Cucumber (Chinese Long) v3cucwcgB264
ClCG07G001110Cucumber (Chinese Long) v3cucwcgB265
ClCG07G001110Watermelon (97103) v2wcgwmbB304
ClCG07G001110Watermelon (97103) v2wcgwmbB305
ClCG07G001110Watermelon (97103) v2wcgwmbB307
ClCG07G001110Wax gourdwcgwgoB556
ClCG07G001110Wax gourdwcgwgoB582
ClCG07G001110Wax gourdwcgwgoB585