Lsi05G010250 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G010250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Light-dependent short hypocotyls 1
Location	chr05 : 17739795 .. 17740512 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTAGCAGCCATAACATCATCATCAACAACAATAACAACAACATCAACCACCACCAACAAGCTCCACCAACGTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGCGATGCAGCGGAGCTCATGTCCTTGAATTCCTCAGGTAGATAATAAAACTGCTCTCCCTCTACCTGTTCGTGGACGTAGTTAACACACTCTTAGTGAATCACATAAAAACTCTGTTTCGATCTATCCTGCCTGTGAATTTCAAGTTATACAACAATTGTCTTTCTTTAATTAATTATATAAAAAGTTAGAACGTAAAATTTTGACTCGGGTTCTCGACAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCATACGGCTATTTGCCCTTTCTACGGGCTGCCGAACCCTCCGGCACCGTGCCCGTGCCCTCTTCGACAGGCATGGGGGAGCCTCGACGCGTTGGTCGGACGGCTTCGAGCGGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCACAATTGCCTTTAACACAACAAACATCTCATGGTACTACTTCATAA

mRNA sequence

GTAGTAGCAGCCATAACATCATCATCAACAACAATAACAACAACATCAACCACCACCAACAAGCTCCACCAACGTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGCATGGGGGAGCCTCGACGCGTTGGTCGGACGGCTTCGAGCGGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCACAATTGCCTTTAACACAACAAACATCTCATGGTACTACTTCATAA

Coding sequence (CDS)

GTAGTAGCAGCCATAACATCATCATCAACAACAATAACAACAACATCAACCACCACCAACAAGCTCCACCAACGTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGCATGGGGGAGCCTCGACGCGTTGGTCGGACGGCTTCGAGCGGCTTTCGAAGAGAATGGTGGGAAACCAGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCACAATTGCCTTTAACACAACAAACATCTCATGGTACTACTTCATAA

Protein sequence

VVAAITSSSTTITTTSTTTNKLHQRPLPAADMRIKSVAIGKLSAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHGTTS

Homology

[Close]

BLAST of Lsi05G010250 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRP
Sbjct: 120 AWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

Query: 104 PSQLPLTQ 111
           P  LP  Q
Sbjct: 180 PPPLPPAQ 187

[Close]

BLAST of Lsi05G010250 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-24
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P
Sbjct: 126 AWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

Query: 104 SQLPLTQQTS 114
                T  +S
Sbjct: 186 LPSSSTSSSS 195

[Close]

BLAST of Lsi05G010250 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-24
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDAL+GRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEKKRKR  
Sbjct: 97  AWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVN 156

Query: 104 SQLPLTQ 111
            Q P TQ
Sbjct: 157 RQKPQTQ 163

[Close]

BLAST of Lsi05G010250 vs. Swiss-Prot
Match: G1L2_ORYSI (Protein G1-like2 OS=Oryza sativa subsp. indica GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-23
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK-RKRP 103
           AWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KARGI+YEKK RKRP
Sbjct: 94  AWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKARGIAYEKKRRKRP 153

Query: 104 PSQLPLTQ 111
           P+    +Q
Sbjct: 154 PTSSSSSQ 161

[Close]

BLAST of Lsi05G010250 vs. Swiss-Prot
Match: G1L2_ORYSJ (Protein G1-like2 OS=Oryza sativa subsp. japonica GN=G1L2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-23
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK-RKRP 103
           AWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KARGI+YEKK RKRP
Sbjct: 94  AWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKARGIAYEKKRRKRP 153

Query: 104 PSQLPLTQ 111
           P+    +Q
Sbjct: 154 PTSSSSSQ 161

[Close]

BLAST of Lsi05G010250 vs. TrEMBL
Match: A0A0A0L7E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383760 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP
Sbjct: 106 AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 165

Query: 104 SQLPLTQQTSHGTTS 119
           SQLPLTQQT+HG +S
Sbjct: 166 SQLPLTQQTTHGASS 180

[Close]

BLAST of Lsi05G010250 vs. TrEMBL
Match: A0A072VL17_MEDTR (G1-like protein OS=Medicago truncatula GN=MTR_1g069825 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRDLQSKARGISYE KKRKRP
Sbjct: 124 AWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 183

Query: 104 PSQLP 108
           P Q P
Sbjct: 184 PQQQP 188

[Close]

BLAST of Lsi05G010250 vs. TrEMBL
Match: A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKRP
Sbjct: 113 AWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 172

Query: 104 PSQ 106
           P+Q
Sbjct: 173 PAQ 175

[Close]

BLAST of Lsi05G010250 vs. TrEMBL
Match: A0A0D2Q4B9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G254200 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR-- 103
           AWGSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK+++  
Sbjct: 108 AWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 167

Query: 104 PPSQLPLTQ 111
           PP Q+P  Q
Sbjct: 168 PPQQIPSLQ 176

[Close]

BLAST of Lsi05G010250 vs. TrEMBL
Match: A0A067EZ94_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046561mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-24
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISYE KKRKRP
Sbjct: 124 AWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRP 183

Query: 104 PSQLPLTQQ 112
           P Q    QQ
Sbjct: 184 PQQQQQQQQ 192

[Close]

BLAST of Lsi05G010250 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-26
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRP
Sbjct: 120 AWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

Query: 104 PSQLPLTQ 111
           P  LP  Q
Sbjct: 180 PPPLPPAQ 187

[Close]

BLAST of Lsi05G010250 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-25
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P
Sbjct: 126 AWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

Query: 104 SQLPLTQQTS 114
                T  +S
Sbjct: 186 LPSSSTSSSS 195

[Close]

BLAST of Lsi05G010250 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-25
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDAL+GRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEKKRKR  
Sbjct: 97  AWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVN 156

Query: 104 SQLPLTQ 111
            Q P TQ
Sbjct: 157 RQKPQTQ 163

[Close]

BLAST of Lsi05G010250 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-23
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR-- 103
           AWGSLDAL+GRLRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR  
Sbjct: 105 AWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVN 164

Query: 104 --------PPSQLPLTQQ 112
                   P SQ PL QQ
Sbjct: 165 NKQITQSQPQSQPPLPQQ 182

[Close]

BLAST of Lsi05G010250 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-23
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 23  HQRPLPAADMRIKSVAIGKLSAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLRE 82
           HQ+P       +K        AWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLRE
Sbjct: 89  HQQPPSPCSCPLKQ-------AWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLRE 148

Query: 83  VRDLQSKARGISYE-KKRKRPPS 105
           VR+ Q+KARGI YE KKRKRPP+
Sbjct: 149 VRESQAKARGIPYEKKKRKRPPT 164

[Close]

BLAST of Lsi05G010250 vs. NCBI nr
Match: gi|449468688|ref|XP_004152053.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 5.5e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP
Sbjct: 106 AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 165

Query: 104 SQLPLTQQTSHGTTS 119
           SQLPLTQQT+HG +S
Sbjct: 166 SQLPLTQQTTHGASS 180

[Close]

BLAST of Lsi05G010250 vs. NCBI nr
Match: gi|659093192|ref|XP_008447415.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 103
           AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP
Sbjct: 106 AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP 165

Query: 104 SQLPLTQQTSHGTTS 119
           +QLPLTQQT+HG +S
Sbjct: 166 AQLPLTQQTTHGASS 180

[Close]

BLAST of Lsi05G010250 vs. NCBI nr
Match: gi|1012180484|ref|XP_015968040.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR-- 103
           AWGSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK+++  
Sbjct: 123 AWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182

Query: 104 PPSQLPLTQQTSHG 116
           PP Q P  QQ++ G
Sbjct: 183 PPQQQPQQQQSNIG 196

[Close]

BLAST of Lsi05G010250 vs. NCBI nr
Match: gi|1012014685|ref|XP_015948741.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis])

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKRP
Sbjct: 136 AWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 195

Query: 104 PSQLPLTQQTSH 115
           P Q    QQ  H
Sbjct: 196 PQQHNHHQQHQH 207

[Close]

BLAST of Lsi05G010250 vs. NCBI nr
Match: gi|1021528128|ref|XP_016207583.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis ipaensis])

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-24
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 44  AWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP 103
           AWGSLDAL+GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE KKRKRP
Sbjct: 123 AWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182

Query: 104 PSQLPLTQQTSHG 116
           P Q    QQ + G
Sbjct: 183 PPQQQPQQQPNIG 195

The following BLAST results are available for this feature:

BLAST of Lsi05G010250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH4_ARATH	1.1e-24	85.29	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
LSH3_ARATH	4.2e-24	77.14	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ...	[more]
LSH1_ARATH	5.5e-24	80.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ...	[more]
G1L2_ORYSI	1.6e-23	82.35	Protein G1-like2 OS=Oryza sativa subsp. indica GN=OsI_24078 PE=3 SV=1	[more]
G1L2_ORYSJ	1.6e-23	82.35	Protein G1-like2 OS=Oryza sativa subsp. japonica GN=G1L2 PE=1 SV=1	[more]

BLAST of Lsi05G010250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E1_CUCSA	3.9e-32	96.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383760 PE=4 SV=1	[more]
A0A072VL17_MEDTR	3.9e-24	92.31	G1-like protein OS=Medicago truncatula GN=MTR_1g069825 PE=4 SV=1	[more]
A0A061DNN8_THECC	3.9e-24	95.24	IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 P...	[more]
A0A0D2Q4B9_GOSRA	3.9e-24	85.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G254200 PE=4 SV=1	[more]
A0A067EZ94_CITSI	5.0e-24	88.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046561mg PE=4 SV=1	[more]

BLAST of Lsi05G010250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	6.3e-26	85.29	Protein of unknown function (DUF640)	[more]
AT2G31160.1	2.4e-25	77.14	Protein of unknown function (DUF640)	[more]
AT5G28490.1	3.1e-25	80.60	Protein of unknown function (DUF640)	[more]
AT3G04510.1	6.5e-23	66.67	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.5e-23	63.86	Protein of unknown function (DUF640)	[more]

BLAST of Lsi05G010250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468688\|ref\|XP_004152053.1\|	5.5e-32	96.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus]	[more]
gi\|659093192\|ref\|XP_008447415.1\|	1.2e-31	94.67	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
gi\|1012180484\|ref\|XP_015968040.1\|	1.5e-24	82.43	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis]	[more]
gi\|1012014685\|ref\|XP_015948741.1\|	1.9e-24	87.50	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis duranensis]	[more]
gi\|1021528128\|ref\|XP_016207583.1\|	2.5e-24	86.30	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010492	maintenance of shoot apical meristem identity
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
biological_process	GO:0048441	petal development
biological_process	GO:0009886	post-embryonic animal morphogenesis
biological_process	GO:0048834	specification of petal number
biological_process	GO:0007389	pattern specification process
biological_process	GO:0048731	system development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G010250.1	Lsi05G010250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 43..85 score: 6.3
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 1..99 score: 32
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 44..115 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G010250	MELO3C006417.2	Melon (DHL92) v3.6.1	lsimedB398
Lsi05G010250	Cp4.1LG15g00850	Cucurbita pepo (Zucchini)	cpelsiB209
Lsi05G010250	CsGy3G012010	Cucumber (Gy14) v2	cgyblsiB204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G010250	Wax gourd	lsiwgoB425
Lsi05G010250	Wax gourd	lsiwgoB453
Lsi05G010250	Wax gourd	lsiwgoB459
Lsi05G010250	Bottle gourd (USVL1VR-Ls)	lsilsiB012
Lsi05G010250	Bottle gourd (USVL1VR-Ls)	lsilsiB156
Lsi05G010250	Cucumber (Gy14) v1	cgylsiB417
Lsi05G010250	Cucumber (Gy14) v1	cgylsiB621
Lsi05G010250	Cucurbita maxima (Rimu)	cmalsiB247
Lsi05G010250	Cucurbita maxima (Rimu)	cmalsiB486
Lsi05G010250	Cucurbita maxima (Rimu)	cmalsiB585
Lsi05G010250	Cucurbita maxima (Rimu)	cmalsiB769
Lsi05G010250	Cucurbita maxima (Rimu)	cmalsiB840
Lsi05G010250	Cucurbita moschata (Rifu)	cmolsiB235
Lsi05G010250	Cucurbita moschata (Rifu)	cmolsiB470
Lsi05G010250	Cucurbita moschata (Rifu)	cmolsiB565
Lsi05G010250	Cucurbita moschata (Rifu)	cmolsiB761
Lsi05G010250	Cucurbita moschata (Rifu)	cmolsiB824
Lsi05G010250	Cucurbita pepo (Zucchini)	cpelsiB124
Lsi05G010250	Cucurbita pepo (Zucchini)	cpelsiB269
Lsi05G010250	Cucurbita pepo (Zucchini)	cpelsiB508
Lsi05G010250	Cucurbita pepo (Zucchini)	cpelsiB616
Lsi05G010250	Cucurbita pepo (Zucchini)	cpelsiB716
Lsi05G010250	Wild cucumber (PI 183967)	cpilsiB127
Lsi05G010250	Wild cucumber (PI 183967)	cpilsiB213
Lsi05G010250	Wild cucumber (PI 183967)	cpilsiB214
Lsi05G010250	Cucumber (Chinese Long) v2	culsiB129
Lsi05G010250	Cucumber (Chinese Long) v2	culsiB215
Lsi05G010250	Cucumber (Chinese Long) v2	culsiB216
Lsi05G010250	Melon (DHL92) v3.5.1	lsimeB356
Lsi05G010250	Melon (DHL92) v3.5.1	lsimeB364
Lsi05G010250	Melon (DHL92) v3.5.1	lsimeB382
Lsi05G010250	Watermelon (Charleston Gray)	lsiwcgB337
Lsi05G010250	Watermelon (Charleston Gray)	lsiwcgB344
Lsi05G010250	Watermelon (Charleston Gray)	lsiwcgB348
Lsi05G010250	Watermelon (97103) v1	lsiwmB356
Lsi05G010250	Watermelon (97103) v1	lsiwmB367
Lsi05G010250	Watermelon (97103) v1	lsiwmB383
Lsi05G010250	Cucumber (Gy14) v2	cgyblsiB117
Lsi05G010250	Cucumber (Gy14) v2	cgyblsiB202
Lsi05G010250	Melon (DHL92) v3.6.1	lsimedB370
Lsi05G010250	Melon (DHL92) v3.6.1	lsimedB379
Lsi05G010250	Silver-seed gourd	carlsiB211
Lsi05G010250	Silver-seed gourd	carlsiB689
Lsi05G010250	Silver-seed gourd	carlsiB717
Lsi05G010250	Silver-seed gourd	carlsiB879
Lsi05G010250	Silver-seed gourd	carlsiB984
Lsi05G010250	Cucumber (Chinese Long) v3	cuclsiB140
Lsi05G010250	Cucumber (Chinese Long) v3	cuclsiB234
Lsi05G010250	Cucumber (Chinese Long) v3	cuclsiB236
Lsi05G010250	Watermelon (97103) v2	lsiwmbB335
Lsi05G010250	Watermelon (97103) v2	lsiwmbB342
Lsi05G010250	Watermelon (97103) v2	lsiwmbB346