CsGy3G007850 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007850
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Arginine/serine-rich splicing factor, putative
Location	Chr3 : 6679100 .. 6683686 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTTTAACAACACCCTCTGTTTCTTCAGCTCTCAGAGTTCCGTCAAGAACCCTAACTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCCCAAACCCTAAATCCCTCCATCCCCTTTTCCACCCCCCGCCGCTCCTCTTCTCCACTCCTCCACCGACGCCCTGCCTCAGGTTACGCCGCTGCACTCCTCGACGCATCTCAATCTACCGGCACGATTCACTCGGTGGCGAAGGATGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATTGGAAGGGTCTTGAATGATCCGTTGGTGGGAGACGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGTGGGTTTGAGAGGCAGGTGGTGAAGTTAACGAAGCTGCTGATTGAGAAGAGCAAACTAAGTATTTTAACGGAGGTGTTTAGCGAATTCGAAAGGGTTTATGATGAGCTCTGTGGAACGGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGGAGGAAGAAGAGTTGATTGGGATTGCGAAGAACGTGCAAAGGCTGAGTGGGGCTATCAAAGTGAAGGTCAGAAGCTTCATTCATGGCGGATTAATGGTTTAGAGTTGATACAATCAATAGCAATATGTTGGATATGAAGTTTGTAATTCATGAACGATTGCAAAGATTTCAGAATACTGCTATCGAATCAAAATTGTTGGATTGAAGTTCTTATGTACAATCACCATGATTCATAACATCACATTTTTTATCCAAAACCAATTTTGGAAATCAAAGGATTGTTGTCTACAAGGCAATCTTTGATTGTGTAATTCAAATCACTACATAATCTCACAACAACAAATTTATCTTTTTCATTTGATCAAATTTCTGTTATGATTGCCCAAGCATTGTTATGTTTGAATGGTGATTTCTTTGACTTAAAAAGATAAGTTTTCTTCTGAAGAAACTTTAATATACACAATATTTCATATTTTTGGACTCAACTTTGTTGGTTGAAGTCGATGGTGTATAGTGTATTTAGAAGAGAATATGATAGTTAATGACAATTTATAAATATAGTAAAATCTTTTAAAATATTATGAGTTAGAGCATATAAAACAACGTTGATCTATTACTTATAGAATAAAATTACCTATAGATTTGTTGTTGGTAATTGAATTTTTTTAAAAATGTTAGTATCCATAGTTATTTTTTCTAAAATCGAGAAATTAGGGATCAAAAAGTGAAAGGAACCGAGAATTGGGCCTTCTTCCACACAAAGCCCAATCATCCTTCTAAAAATTGCAAATCTCAAAAATACCCTTTAGGGAGTCTAAGGGTGAAATCTGGGTCGACGGTAGTCTTGCATAGGAAAGTCAGATAATCGGACGGTGTGAAAGGAAGAACATCAAGAGTACCGGTTTTGCTTTGCGGTTTAAAATGAATCGATTTGCGTCATTAGGGCTTCTTTGAAAAAAGAAAAGACACAGCCTTTCTCTTCCTCTCTCTCCTAGGGTTTCTCTGTTCTGTTCGAATCCGAGAATCTCCAAGGTTTGTTCTCTTCAATCCTTTGGTAATTGATCCAATCGATCGTTTTACTTTTCGTTTCTGGTCAAACCCCCAAACCAAGTTCTTCCCTTTCTTTCATCGTTTGATTCGAAAGAACATAGGTCGATTCATGTCGATGAAGTTGTTTATTATATATATATATATACACACACACACACACATTTATGGAGGAAGCTGTTATCTTTCTTTCACTTTTCGTCTGATTAACGTTCGAGCTTATTGATTTCGCTTTGTTTCGGTTTCGTATTTTCTACAGTACGATCTTTTGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCTCCAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTATATTGCAATTTCTTTAATGTAGTATGCCATTTTTAACAAAGATGTTAGTAAGTGGGTCATAACTTGTGCAGATTGTATTGTACGAAGGATCCCTTCTGTGGTCAGCTTTGAGTGAATTGATTGTCTTGAATATTGCTCTTAAAACCTTTTTTTTTTTGGTATTGCCATCGGTGGAATGAGTGTGTTGTAATGTGAAACTGTATTAAGATAATAGATGCACCAAAATGATCATGTTCATTTTGGTGTCATACGCATTGGATGTTGCATCTGGATTATTGATGTGTGTTTTAATCTGAATTCTTTGATGTTCTTGAAGAACCATACTCCTCTTGGCTCACAGTTGTCTGCATGTATGCATTGATGGTTAGTATTGTCAAGTATAATTCCTACTTTTAAGCTTCATAGCTTGGAGTTTTGTTTGGTTTTTTTTTTTTTTAACATTCTTACATGTGGATGTTTGTGCATTCACTGGAATCATCTTACGTTTTCCTTGCTAACTGAAATTGCTTACTTTGGGCATGAGTTTTAAATTATCTTTATTTTCTGGAAAATATCCTTGGTCCTCACCCACCTTGCCCTACATCGTATGAAGTTATATGTAAATCAACGATTTTGGAAATTTTGGCTATAGGGTTTATTAAATTGTGGTATTATAGTGCAAGGCTTCTCCACAGATACTAACACTAAGTGTAAAAGTAATATCACGTTTTTATGATTAATACTAAAACCGATGTTTTTTACATAATAAAATCCAGTTCAGTGACATGGATGCATAGCTATTATGCTGTGAATATCATCCAATGGTCCATTTTTCTGATGAAAACTTAATGGCAGGCACAATTGCTATTTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTTCTAAGGAAAATGAGCCAAGCTCCTATCTGGGCTCACCACCATGACACCATCTGTGCATTAAAATTAATTTGGAAGGAAACTTCCTGCTTGCCTGCTTACCTTCACCTACAGATAGCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCATCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTTGCAATTCATCAGAATCGTGTTAATGGATTGATCTTTATCTCATGCCTTGCCTATCTATCACCACTGATCATAGGACATCACTGAAATCTGATCATGCCTTCCATATGATAATAGTGGCTGAATGAAATCTATCATGCCTTCCATTTGATAATAGTGGCTGAATGAAATCTGTCATGCCATGCCTTCCATATCTGAACTCGTGCTGTGTGAAGGTGAAGGATAGTTGAATTTTTGGATTAAAACCTTAAGTAGGCAACCATCTTAGTCCATCATGCAACGTCTCTACCGCTATATGTGCATCAGTCCTCCCATATTTGCAGGTGTTGTATTTTTTATAGTTTATCCCAGGGAGAGAATTCAAGGGGCTGAGTGACAATACCTGCTTAATGGATGATGCTTCAACAGCTTACCAGTTTTGTATGTCTAATTGTTATTATTTGGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGTAGACCTCTCTCACTACGTTTTTCTGTGCCCTTCGTTCTTCCTTTTGAGTTTATGCAAGTTAGAAGCTGTTTTTTTTTTCATGATTAGTAGATAGGTATTTTATTCTAACTTTTGGGTTGGGTTGGTTTAGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGGTAAGCTTTGTCTGGATTCTCCTGCATGCGTGCTCTTTCTATTTGGTGTATTTATTTTCTTCTCTCTTATGGACGTGAAGTATTTGTACTGTGCCTTATAATTTTGCAGCAAGATACTAGACAGGGTTGTATCAGTTGAATATGCTTTGAGGGATGATGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCTCCAAGTCCGGTGTTTCGCCGTCGACCAAGTCCTGACTATGGGCGAGCTCATAGCCCTGCTTATGACAGATATAATGGACCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAATCGAAGCCCTGAATACGGTGGTAGATTTCGCAGGTATTTATTGTTCTTTGATAGTTTGCACAGCCTGCCTTTTGAGTTACCATAGCTTGTAGTTGAAGCTAACTGTCCGTTTTCCTGATGTCTTTGTTGGCAGCCGTTCACCCATTCGAAGGTCAAGA

mRNA sequence

ATGGATACTTTAACAACACCCTCTGTTTCTTCAGCTCTCAGAGTTCCGTCAAGAACCCTAACTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCCCAAACCCTAAATCCCTCCATCCCCTTTTCCACCCCCCGCCGCTCCTCTTCTCCACTCCTCCACCGACGCCCTGCCTCAGGTTACGCCGCTGCACTCCTCGACGCATCTCAATCTACCGGCACGATTCACTCGGTGGCGAAGGATGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATTGGAAGGGTCTTGAATGATCCGTTGGTGGGAGACGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGTGGGTTTGAGAGGCAGGTGGTGAAGTTAACGAAGCTGCTGATTGAGAAGAGCAAACTAAGTATTTTAACGGAGGTGTTTAGCGAATTCGAAAGGGTTTATGATGAGCTCTGTGGAACGGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGGAGGAAGAAGAGTTGATTGGGATTGCGAAGAACGTGCAAAGGCTGAGTGGGGCTATCAAAGTGAAGGTCAGAAGCTTCATTCATGGCGGATTAATGGGTTTCTCTGTTCTGTTCGAATCCGAGAATCTCCAAGTACGATCTTTTGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCTCCAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGCAAGATACTAGACAGGGTTGTATCAGTTGAATATGCTTTGAGGGATGATGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCTCCAAGTCCGGTGTTTCGCCGTCGACCAAGTCCTGACTATGGGCGAGCTCATAGCCCTGCTTATGACAGATATAATGGACCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAATCGAAGCCCTGAATACGGTGGTAGATTTCGCAGCCGTTCACCCATTCGAAGGTCAAGA

Coding sequence (CDS)

ATGGATACTTTAACAACACCCTCTGTTTCTTCAGCTCTCAGAGTTCCGTCAAGAACCCTAACTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCCCAAACCCTAAATCCCTCCATCCCCTTTTCCACCCCCCGCCGCTCCTCTTCTCCACTCCTCCACCGACGCCCTGCCTCAGGTTACGCCGCTGCACTCCTCGACGCATCTCAATCTACCGGCACGATTCACTCGGTGGCGAAGGATGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATTGGAAGGGTCTTGAATGATCCGTTGGTGGGAGACGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGTGGGTTTGAGAGGCAGGTGGTGAAGTTAACGAAGCTGCTGATTGAGAAGAGCAAACTAAGTATTTTAACGGAGGTGTTTAGCGAATTCGAAAGGGTTTATGATGAGCTCTGTGGAACGGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGGAGGAAGAAGAGTTGATTGGGATTGCGAAGAACGTGCAAAGGCTGAGTGGGGCTATCAAAGTGAAGGTCAGAAGCTTCATTCATGGCGGATTAATGGGTTTCTCTGTTCTGTTCGAATCCGAGAATCTCCAAGTACGATCTTTTGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCTCCAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGCAAGATACTAGACAGGGTTGTATCAGTTGAATATGCTTTGAGGGATGATGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCTCCAAGTCCGGTGTTTCGCCGTCGACCAAGTCCTGACTATGGGCGAGCTCATAGCCCTGCTTATGACAGATATAATGGACCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAATCGAAGCCCTGAATACGGTGGTAGATTTCGCAGCCGTTCACCCATTCGAAGGTCAAGA

Protein sequence

MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMGFSVLFESENLQVRSFVATMRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSR

Homology

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BLAST of CsGy3G007850 vs. NCBI nr
Match: XP_004134294.1 (PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus] >KGN56400.1 hypothetical protein Csa_3G119340 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 8.6e-115
Identity = 225/226 (99.56%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTK+LIEKSKLSILTEVFSEFERVYDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 227
           CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 226

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BLAST of CsGy3G007850 vs. NCBI nr
Match: XP_008437855.1 (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 400.2 bits (1027), Expect = 1.0e-107
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTT SVSS LRVPSRTL SSRDFLHLKNPTAHLPHRSP RTSNSISKPPNFLSTP+T
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAAL+DASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTK+LIEK  L ILTEVFSEF+R+YDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 227
           CGTEVVMVSS+KKMEEEEL GIAKN QRLSGA+KVKVRSF+HGGLM
Sbjct: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLM 226

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BLAST of CsGy3G007850 vs. NCBI nr
Match: XP_004133800.1 (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus] >XP_008437857.1 PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Cucumis melo] >KGN56401.1 hypothetical protein Csa_3G119350 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 4.7e-105
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 425
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 426 GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 485
           GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 486 RFRSRSPIRRSR 498
           RFRSRSPIRRSR
Sbjct: 241 RFRSRSPIRRSR 252

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BLAST of CsGy3G007850 vs. NCBI nr
Match: XP_022147391.1 (serine/arginine-rich splicing factor RS31-like isoform X1 [Momordica charantia])

HSP 1 Score: 371.3 bits (952), Expect = 5.1e-99
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDN+ F
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNMAF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           GYDRRRLSVEWARGERGRHRDGSKS+ANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSIANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 425
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 426 GGYGRPGDS 435
             YGRPGDS
Sbjct: 181 -AYGRPGDS 188

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BLAST of CsGy3G007850 vs. NCBI nr
Match: XP_023539917.1 (serine/arginine-rich splicing factor RS31-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97
Identity = 176/190 (92.63%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           M+PIFVGNFGYDTRQSELER F+KYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDN+PF
Sbjct: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           G+DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TRVRDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 425
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRRA
Sbjct: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180

Query: 426 GGYGRPGDSP 436
             YGRPGDSP
Sbjct: 181 -AYGRPGDSP 189

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BLAST of CsGy3G007850 vs. TAIR10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-77
Identity = 141/181 (77.90%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFEDERDAEDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD-PFDESPRR 425
            NVRIRRNF+FVQFETQEDATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

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BLAST of CsGy3G007850 vs. TAIR10
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-73
Identity = 136/174 (78.16%), Postives = 155/174 (89.08%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MR ++VGNF YDTR S+LERLFSK+GRV+R+DMKSG+AFVYFEDERDAEDAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 306 GYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 365
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 366 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD 417
           GKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK+LD+VVSVEYALR+ GER D
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGERED 173

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BLAST of CsGy3G007850 vs. TAIR10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 239.6 bits (610), Expect = 4.2e-63
Identity = 113/182 (62.09%), Postives = 142/182 (78.02%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 306 GYDRRRLSVEWARGER---GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 365
           G   RRL VEW + +R   GR     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 366 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 425
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

[Close]

BLAST of CsGy3G007850 vs. TAIR10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35)

HSP 1 Score: 229.6 bits (584), Expect = 4.3e-60
Identity = 110/183 (60.11%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           M+P+F GNF YD R+ +LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 306 GYDRRRLSVEWARGERGRHR----DGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEP 365
           G   RRL VEW + ERG  +             RP+KTLFVINFD   TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKXXXXXXXXXXXXXRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 366 YGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDES 425
           YGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ SK++D+V+SVEYA++DD  RG+     
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

[Close]

BLAST of CsGy3G007850 vs. TAIR10
Match: AT4G09650.1 (ATP synthase delta-subunit gene)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-14
Identity = 43/151 (28.48%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 83  ASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAV 142
           AS YA AL D ++   T+     D+ +  ++    ++     +P +  E+K +++ +I  
Sbjct: 52  ASSYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVK 111

Query: 143 KGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEEELIGI 202
               +        +L++ ++++I+TE+  EFE VY++L  T++  V S  K+E  +L  I
Sbjct: 112 SSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQI 171

Query: 203 AKNVQRLSGAIKVKVRSFIHGGLM-GFSVLF 233
           AK VQ+L+GA  V+V++ I   L+ GF++ +
Sbjct: 172 AKQVQKLTGAKNVRVKTVIDASLVAGFTIRY 202

[Close]

BLAST of CsGy3G007850 vs. Swiss-Prot
Match: sp|P92964|SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 287.7 bits (735), Expect = 2.4e-76
Identity = 141/181 (77.90%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFEDERDAEDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD-PFDESPRR 425
            NVRIRRNF+FVQFETQEDATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

[Close]

BLAST of CsGy3G007850 vs. Swiss-Prot
Match: sp|Q9ZPX8|RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.8e-72
Identity = 136/174 (78.16%), Postives = 155/174 (89.08%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MR ++VGNF YDTR S+LERLFSK+GRV+R+DMKSG+AFVYFEDERDAEDAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 306 GYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 365
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 366 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD 417
           GKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK+LD+VVSVEYALR+ GER D
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGERED 173

[Close]

BLAST of CsGy3G007850 vs. Swiss-Prot
Match: sp|P92966|SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 239.6 bits (610), Expect = 7.5e-62
Identity = 113/182 (62.09%), Postives = 142/182 (78.02%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 306 GYDRRRLSVEWARGER---GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 365
           G   RRL VEW + +R   GR     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 366 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 425
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

[Close]

BLAST of CsGy3G007850 vs. Swiss-Prot
Match: sp|P92965|RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 7.8e-59
Identity = 110/183 (60.11%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           M+P+F GNF YD R+ +LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 306 GYDRRRLSVEWARGERGRHR----DGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEP 365
           G   RRL VEW + ERG  +             RP+KTLFVINFD   TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKXXXXXXXXXXXXXRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 366 YGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDES 425
           YGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ SK++D+V+SVEYA++DD  RG+     
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

[Close]

BLAST of CsGy3G007850 vs. Swiss-Prot
Match: sp|Q02758|ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-17
Identity = 69/218 (31.65%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 34  AHLPHRSPSRTSNSISKPPNFLSTPQTLN-PSIPFSTP-------------RRSSSPLLH 93
           A L H + S  S  I K  N L+    LN  S  F +P             RRS+   L 
Sbjct: 2   ASLQHTTASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLXXXXXXXXXXXRRSTGGALG 61

Query: 94  RR----PASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGR 153
            R     A  YAAAL D + S  T+ ++  D  +  +L    ++    + P+V D  K +
Sbjct: 62  ARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQ 121

Query: 154 LVKEIAVKGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKME 213
           L+ E A   GF+        +LI+  ++ ++ ++  EFE VY+ L  TE+V+V+S  K+E
Sbjct: 122 LIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLE 181

Query: 214 EEELIGIAKNVQRLSGAIKVKVRSFIHGGLM-GFSVLF 233
              L  IAK VQ+L+GA KV+ ++ +   L+ GF+V +
Sbjct: 182 SHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRY 219

[Close]

BLAST of CsGy3G007850 vs. TrEMBL
Match: tr|A0A0A0L326|A0A0A0L326_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.7e-115
Identity = 225/226 (99.56%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTK+LIEKSKLSILTEVFSEFERVYDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 227
           CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 226

[Close]

BLAST of CsGy3G007850 vs. TrEMBL
Match: tr|A0A1S3AUM9|A0A1S3AUM9_CUCME (ATP synthase delta chain, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483162 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.7e-108
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTT SVSS LRVPSRTL SSRDFLHLKNPTAHLPHRSP RTSNSISKPPNFLSTP+T
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAAL+DASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKLLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTK+LIEK  L ILTEVFSEF+R+YDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 227
           CGTEVVMVSS+KKMEEEEL GIAKN QRLSGA+KVKVRSF+HGGLM
Sbjct: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLM 226

[Close]

BLAST of CsGy3G007850 vs. TrEMBL
Match: tr|A0A1S3AUZ7|A0A1S3AUZ7_CUCME (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 3.1e-105
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 425
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 426 GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 485
           GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 486 RFRSRSPIRRSR 498
           RFRSRSPIRRSR
Sbjct: 241 RFRSRSPIRRSR 252

[Close]

BLAST of CsGy3G007850 vs. TrEMBL
Match: tr|A0A0A0L8H4|A0A0A0L8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 3.1e-105
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 425
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 426 GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 485
           GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 486 RFRSRSPIRRSR 498
           RFRSRSPIRRSR
Sbjct: 241 RFRSRSPIRRSR 252

[Close]

BLAST of CsGy3G007850 vs. TrEMBL
Match: tr|A0A068UJD0|A0A068UJD0_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027680001 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.8e-89
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 246 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 305
           MRP+F GNF Y+TRQS+LERLFSKYGRVER+DMKSGFAFVYFEDERDAEDAIRGLDN PF
Sbjct: 1   MRPVFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNAPF 60

Query: 306 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 365
           G+DRRRLSVEWA+GERGRHRD S+SM NQRPTKTLFVINFDPIRTR+RDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWAKGERGRHRDSSRSMVNQRPTKTLFVINFDPIRTRIRDIERHFEPYGKV 120

Query: 366 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 425
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD +D SPRR 
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDRYD-SPRR- 180

Query: 426 GGYGRPGDSP 436
             YG  G SP
Sbjct: 181 -DYGGRGGSP 187

The following BLAST results are available for this feature:

BLAST of CsGy3G007850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134294.1	8.6e-115	99.56	PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus] >KGN56...	[more]
XP_008437855.1	1.0e-107	92.48	PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo]	[more]
XP_004133800.1	4.7e-105	100.00	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus...	[more]
XP_022147391.1	5.1e-99	96.83	serine/arginine-rich splicing factor RS31-like isoform X1 [Momordica charantia]	[more]
XP_023539917.1	6.2e-97	92.63	serine/arginine-rich splicing factor RS31-like isoform X1 [Cucurbita pepo subsp....	[more]

BLAST of CsGy3G007850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61860.1	1.3e-77	77.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	1.5e-73	78.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.2	4.2e-63	62.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.1	4.3e-60	60.11	arginine/serine-rich splicing factor 35	[more]
AT4G09650.1	1.6e-14	28.48	ATP synthase delta-subunit gene	[more]

BLAST of CsGy3G007850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P92964\|SRS31_ARATH	2.4e-76	77.90	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
sp\|Q9ZPX8\|RS31A_ARATH	2.8e-72	78.16	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
sp\|P92966\|SRS41_ARATH	7.5e-62	62.09	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
sp\|P92965\|RS40_ARATH	7.8e-59	60.11	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
sp\|Q02758\|ATPD_PEA	1.9e-17	31.65	ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV...	[more]

BLAST of CsGy3G007850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L326\|A0A0A0L326_CUCSA	5.7e-115	99.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=4 SV=1	[more]
tr\|A0A1S3AUM9\|A0A1S3AUM9_CUCME	6.7e-108	92.48	ATP synthase delta chain, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483162 ...	[more]
tr\|A0A1S3AUZ7\|A0A1S3AUZ7_CUCME	3.1e-105	100.00	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=365...	[more]
tr\|A0A0A0L8H4\|A0A0A0L8H4_CUCSA	3.1e-105	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1	[more]
tr\|A0A068UJD0\|A0A068UJD0_COFCA	1.8e-89	88.42	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027680001 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005681	spliceosomal complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR029537	RSP31/31A/40/41
IPR029536	RS31
IPR000711	ATPase_OSCP/dsu
IPR026015	ATP_synth_OSCP/delta_N_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0045259	proton-transporting ATP synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007850.1	CsGy3G007850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 248..315 e-value: 2.4E-16 score: 70.3 coord: 339..405 e-value: 3.3E-17 score: 73.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 249..305 e-value: 2.1E-16 score: 59.4 coord: 340..402 e-value: 8.8E-12 score: 44.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 338..409 score: 15.221
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 247..319 score: 17.558
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 330..417 e-value: 5.2E-19 score: 70.3 coord: 243..329 e-value: 8.0E-21 score: 76.1
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	GENE3D	G3DSA:1.10.520.20		coord: 83..175 e-value: 1.1E-10 score: 44.1
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	SUPERFAMILY	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 83..180
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 84..224 e-value: 4.3E-19 score: 69.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 463..484
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..497
None	No IPR available	CDD	cd12234	RRM1_AtRSp31_like	coord: 247..318 e-value: 1.01289E-37 score: 132.252
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 339..408 e-value: 4.26485E-40 score: 138.835
IPR029536	Serine/arginine-rich splicing factor RS31	PANTHER	PTHR44257:SF3	SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED	coord: 246..497
IPR029537	Arginine/serine-rich-splicing factor RSP31/31A/40/41	PANTHER	PTHR44257	FAMILY NOT NAMED	coord: 246..497
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 247..411

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007850	Cla021131	Watermelon (97103) v1	cgybwmB217
CsGy3G007850	Csa3G119340	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007850	MELO3C006001	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007850	ClCG05G000620	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007850	CSPI03G07720	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007850	CmaCh14G021260	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G007850	CmaCh06G009800	Cucurbita maxima (Rimu)	cgybcmaB443
CsGy3G007850	CmoCh14G021870	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G007850	CmoCh06G010240	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007850	Lsi05G021500	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007850	Cp4.1LG08g00860	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007850	MELO3C006001.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007850	Cla97C05G080690	Watermelon (97103) v2	cgybwmbB196
CsGy3G007850	Bhi01G000378	Wax gourd	cgybwgoB272
CsGy3G007850	Carg25710	Silver-seed gourd	carcgybB0131
CsGy3G007850	Carg20909	Silver-seed gourd	carcgybB0980

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007850	Cucumber (Gy14) v2	cgybcgybB085
CsGy3G007850	Cucurbita maxima (Rimu)	cgybcmaB401
CsGy3G007850	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007850	Cucurbita moschata (Rifu)	cgybcmoB372
CsGy3G007850	Cucurbita moschata (Rifu)	cgybcmoB430
CsGy3G007850	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G007850	Cucurbita pepo (Zucchini)	cgybcpeB428
CsGy3G007850	Cucumber (Chinese Long) v2	cgybcuB125
CsGy3G007850	Bottle gourd (USVL1VR-Ls)	cgyblsiB137
CsGy3G007850	Melon (DHL92) v3.5.1	cgybmeB142
CsGy3G007850	Melon (DHL92) v3.6.1	cgybmedB139
CsGy3G007850	Watermelon (Charleston Gray)	cgybwcgB189
CsGy3G007850	Watermelon (97103) v1	cgybwmB243
CsGy3G007850	Wild cucumber (PI 183967)	cgybcpiB126
CsGy3G007850	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G007850	Cucumber (Chinese Long) v3	cgybcucB130
CsGy3G007850	Watermelon (97103) v2	cgybwmbB166
CsGy3G007850	Wax gourd	cgybwgoB249