Carg20909 (gene) Silver-seed gourd

Overview
NameCarg20909
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionATP synthase delta chain, chloroplastic
LocationCucurbita_argyrosperma_scaffold_141 : 287877 .. 289244 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTCTAACAAGCTCTGTTTCAACTCTCAGAGTTCCATCCACTTTAGCTTCATCTCGCGACCTTCTTCACCTCAAGAATTACTCTGCTCATCTTCCTCATCGCTCTCCTTCTCGCAGATCCAACTCAATCTCCAAACCCCCTAATTTTCTCTCTACTCACAAAACCCTAAATCCGCTTCCGTTTTCTTCTTCCTTCTCCTCTTCCTCCCCACGCCGCTCCTCTTCGCCGTCACTTCACCGTCGTCCTGCTGCTGGATACGCCGCGGCACTCGTCGATGCATCGCAAACTACCGGATCGATTCACTCGGTGGCGAAGGACGTTGGGAGATTCTCGAAGGTGTTGAGAACGAAGCGAATCGGGGGGTTTTTGAACGATCCGTTTGTAGTGGAGGAGGAGAAAGGGCGATTGGTGAGGGAAATTGCGGCGAAGGGAGGGTTTGAGAAACAGGTGGTGAAGTTGACGAAGATGTTGGTTGAGAAAAAGAGATTGGGGATTCTGAATGAGGTGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTTTTGGTTTCTTCCAACAGGAAGATGCAGGAACAGGAGCTGTTTGGGATTGCGAAGAATGTGCAAAGACTTAGTGGGGCTATGAAAGTGAAGGTTAGAAGCTTCATCAATGGCGGATTAATGGTGTAGAAGAACTTAATCTGTCTACAGAAGCTTTGAGTATGTGTTCAATTAACTTATCATTTTGATTACATTTCTTCTTCTTCAAGCTTCTACACTCAGCCCATTTTCTTCTCTTCTTCTTCTTCTCTTTTCATCGCATTCTTCAGCCACCCAATGTTTGCCTTCTCCTAAACAAAAATGGTGGGAAGCAATTTAATGGGTTTGTTTTTAATTTGCAGAAATCCGTGCTGGAACTGGAAATTGTCGTGGTTTTCGAATTTTAGGTAATCTCGACCCCCACCCCAACCCCCACCAAAAGGGCCTTCCAAGCGAGATTTCCCTACCTCATAAATGAATATTAGAACAGTTCCCTCCTCTTTCAACCAACATTATTGTAGCCCTTTTCCTCTGTAACTTCACATATGATACGAGAAGTAGATCCAGAAAAATTAGTTTTGGTGGAACACATTATGTAAATATATGTTCAACTGGCACTCTGTGTTTGTTTTGAATCTCTGGAACTTTCTTTTGCAATCATTAATGTAGCGTTGTATGTGGAAATTTATGGTGCATTACGATGATAGCTAATGAGCGTGGAATGAATTATTGTTGCGTAAAATCATTCAACTTACTATTGTAAGTTTATGGGTGAAGTTTTAATATGGTGCCATCGTAAGAATGTTATTGTCCACGAGAATAAAGTTC

mRNA sequence

ATGGATACTCTAACAAGCTCTGTTTCAACTCTCAGAGTTCCATCCACTTTAGCTTCATCTCGCGACCTTCTTCACCTCAAGAATTACTCTGCTCATCTTCCTCATCGCTCTCCTTCTCGCAGATCCAACTCAATCTCCAAACCCCCTAATTTTCTCTCTACTCACAAAACCCTAAATCCGCTTCCGTTTTCTTCTTCCTTCTCCTCTTCCTCCCCACGCCGCTCCTCTTCGCCGTCACTTCACCGTCGTCCTGCTGCTGGATACGCCGCGGCACTCGTCGATGCATCGCAAACTACCGGATCGATTCACTCGGTGGCGAAGGACGTTGGGAGATTCTCGAAGGTGTTGAGAACGAAGCGAATCGGGGGGTTTTTGAACGATCCGTTTGTAGTGGAGGAGGAGAAAGGGCGATTGGTGAGGGAAATTGCGGCGAAGGGAGGGTTTGAGAAACAGGTGGTGAAGTTGACGAAGATGTTGGTTGAGAAAAAGAGATTGGGGATTCTGAATGAGGTGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTTTTGGTTTCTTCCAACAGGAAGATGCAGGAACAGGAGCTGTTTGGGATTGCGAAGAATGTGCAAAGACTTAGTGGGGCTATGAAAGTGAAGGTTAGAAGCTTCATCAATGGCGGATTAATGAAATCCGTGCTGGAACTGGAAATTGTCGTGGTTTTCGAATTTTAGGTAATCTCGACCCCCACCCCAACCCCCACCAAAAGGGCCTTCCAAGCGAGATTTCCCTACCTCATAAATGAATATTAGAACAGTTCCCTCCTCTTTCAACCAACATTATTGTAGCCCTTTTCCTCTGTAACTTCACATATGATACGAGAAGTAGATCCAGAAAAATTAGTTTTGGTGGAACACATTATGTAAATATATGTTCAACTGGCACTCTGTGTTTGTTTTGAATCTCTGGAACTTTCTTTTGCAATCATTAATGTAGCGTTGTATGTGGAAATTTATGGTGCATTACGATGATAGCTAATGAGCGTGGAATGAATTATTGTTGCGTAAAATCATTCAACTTACTATTGTAAGTTTATGGGTGAAGTTTTAATATGGTGCCATCGTAAGAATGTTATTGTCCACGAGAATAAAGTTC

Coding sequence (CDS)

ATGGATACTCTAACAAGCTCTGTTTCAACTCTCAGAGTTCCATCCACTTTAGCTTCATCTCGCGACCTTCTTCACCTCAAGAATTACTCTGCTCATCTTCCTCATCGCTCTCCTTCTCGCAGATCCAACTCAATCTCCAAACCCCCTAATTTTCTCTCTACTCACAAAACCCTAAATCCGCTTCCGTTTTCTTCTTCCTTCTCCTCTTCCTCCCCACGCCGCTCCTCTTCGCCGTCACTTCACCGTCGTCCTGCTGCTGGATACGCCGCGGCACTCGTCGATGCATCGCAAACTACCGGATCGATTCACTCGGTGGCGAAGGACGTTGGGAGATTCTCGAAGGTGTTGAGAACGAAGCGAATCGGGGGGTTTTTGAACGATCCGTTTGTAGTGGAGGAGGAGAAAGGGCGATTGGTGAGGGAAATTGCGGCGAAGGGAGGGTTTGAGAAACAGGTGGTGAAGTTGACGAAGATGTTGGTTGAGAAAAAGAGATTGGGGATTCTGAATGAGGTGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTTTTGGTTTCTTCCAACAGGAAGATGCAGGAACAGGAGCTGTTTGGGATTGCGAAGAATGTGCAAAGACTTAGTGGGGCTATGAAAGTGAAGGTTAGAAGCTTCATCAATGGCGGATTAATGAAATCCGTGCTGGAACTGGAAATTGTCGTGGTTTTCGAATTTTAG

Protein sequence

MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLMKSVLELEIVVVFEF
Homology
[Close]
BLAST of Carg20909 vs. NCBI nr
Match: XP_022934549.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita moschata] >XP_022934555.1 ATP synthase delta chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109
Identity = 217/228 (95.18%), Postives = 219/228 (96.05%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60
           MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120
           LPFSSSFSS        P LHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR
Sbjct: 61  LPFSSSFSSXXXXXXXXPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120

Query: 121 IGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYD 180
           IGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKML+EKKRLGILNEVLSEFERIYD
Sbjct: 121 IGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYD 180

Query: 181 ELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           ELCGTEVVLVSSNRKMQE+ELFGIAKNVQRLSGAMKVKVRSFINGGLM
Sbjct: 181 ELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 228

[Close]
BLAST of Carg20909 vs. NCBI nr
Match: XP_022975394.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 402.5 bits (1033), Expect = 1.0e-108
Identity = 217/228 (95.18%), Postives = 220/228 (96.49%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60
           MDTLTSSVSTLRVPSTLASSRDLLHLKN+SAHLPHRSPSRRSNSISKPPNFLSTHKTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120
            PF     SSSPRRSSSP LHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR
Sbjct: 61  FPF-----SSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120

Query: 121 IGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYD 180
           IGGFLNDPFV EEEKGRLVREIAAKGGFEKQVVKLTKML+EKKRLGILNEVLSEFERIYD
Sbjct: 121 IGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYD 180

Query: 181 ELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           ELCGTEVVLVSSNRKMQE+ELFGIAKNVQRLSGAMKVKVRSFINGGLM
Sbjct: 181 ELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 223

[Close]
BLAST of Carg20909 vs. NCBI nr
Match: XP_022974855.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita maxima] >XP_022974856.1 ATP synthase delta chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 400.2 bits (1027), Expect = 5.0e-108
Identity = 215/228 (94.30%), Postives = 218/228 (95.61%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60
           MDTLTSSVSTLRVPSTLASSRDLLHLKN+SAHLPHRSPSRRSNSISKPPNFLSTHKTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120
           LPFSSSFSS        P LHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR
Sbjct: 61  LPFSSSFSSXXXXXXXXPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120

Query: 121 IGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYD 180
           IGGFLNDPFV EEEKGRLVREIAAKGGFEKQVVKLTKML+EKKRLGILNEVLSEFERIYD
Sbjct: 121 IGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYD 180

Query: 181 ELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           ELCGTEVVLVSSNRKMQE+ELFGIAKNVQRLSGAMKVKVRSFINGGLM
Sbjct: 181 ELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 228

[Close]
BLAST of Carg20909 vs. NCBI nr
Match: XP_023540771.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 213/228 (93.42%), Postives = 218/228 (95.61%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60
           MDTLTSSVSTLRVPSTLASSRDL+HLKN+SAHLPHRSPSRRSNSISKPPNFLSTHKTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLIHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120
           LPFSSSFSS        P LHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR
Sbjct: 61  LPFSSSFSSXXXXXXXXPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKR 120

Query: 121 IGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYD 180
           IGGFLNDPFV EEEKGRLVREIAAKGGFEKQVVKLTKML+EKKRLGILNEVLSEFERIYD
Sbjct: 121 IGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYD 180

Query: 181 ELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           ELCGTEVVLVSSNRKMQE+EL+GIAKNVQRLSGAMKVKVRSFINGGLM
Sbjct: 181 ELCGTEVVLVSSNRKMQEEELYGIAKNVQRLSGAMKVKVRSFINGGLM 228

[Close]
BLAST of Carg20909 vs. NCBI nr
Match: XP_008437855.1 (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 326.6 bits (836), Expect = 7.0e-86
Identity = 183/232 (78.88%), Postives = 202/232 (87.07%), Query Frame = 0 

Query: 1   MDTL--TSSVSTLRVPS-TLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MDTL  TS  STLRVPS TLASSRD LHLKN +AHLPHRSP R SNSISKPPNFLST KT
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNP-LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           LNP +PF      S+PRRSSSP LHRRPA+GYAAALVDASQ+TG+IHSVAKDVGRFSK+L
Sbjct: 61  LNPSIPF------STPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLL 120

Query: 121 RTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFE 180
           R KRIG  LNDP V +EEKGRLV+EIA KGGFE+QVVKLTKML+EK  L IL EV SEF+
Sbjct: 121 RGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFD 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           RIYDELCGTEVV+VSSN+KM+E+ELFGIAKN QRLSGA+KVKVRSF++GGLM
Sbjct: 181 RIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLM 226

[Close]
BLAST of Carg20909 vs. TAIR10
Match: AT4G09650.1 (ATP synthase delta-subunit gene)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-13
Identity = 45/181 (24.86%), Postives = 93/181 (51.38%), Query Frame = 0 

Query: 48  PPNFLSTHKTLNPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAK 107
           PP+     ++L PL  +     ++   ++   +    A+ YA AL D ++   ++     
Sbjct: 16  PPSSFQIARSL-PLRKTFPIRINNGGNAAGARMSATAASSYAMALADVAKRNDTMELTVT 75

Query: 108 DVGRFSKVLRTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGI 167
           D+ +  +V    ++  F  +P +  E+K +++ +I      +        +LV+  R+ I
Sbjct: 76  DIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHTSNFLNVLVDANRINI 135

Query: 168 LNEVLSEFERIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGL 227
           + E++ EFE +Y++L  T++  V S  K++  +L  IAK VQ+L+GA  V+V++ I+  L
Sbjct: 136 VTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLTGAKNVRVKTVIDASL 195

Query: 228 M 229
           +
Sbjct: 196 V 195

[Close]
BLAST of Carg20909 vs. TAIR10
Match: AT4G00895.1 (ATPase, F1 complex, OSCP/delta subunit protein)

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09
Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 0 

Query: 81  HRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVVEEEKGR--- 140
           H + A+G+AAALV   Q+   +    +DV R  +              F+V EEK R   
Sbjct: 92  HDKAASGFAAALVSVCQSKNCLGRTQEDVRRLME--------------FLVGEEKKRNKV 151

Query: 141 LVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYDELCGTEVVLVS 192
           LV ++  +G F K    L KML+ + + GIL +VL EFERI +EL   ++V VS
Sbjct: 152 LVNDVVERGKFGKHFKGLVKMLIARGKSGILVDVLMEFERICNELVSKKLVWVS 191

[Close]
BLAST of Carg20909 vs. Swiss-Prot
Match: sp|P32980|ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 0 

Query: 85  AAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVVEEEKGRLVREIAA 144
           A  YA AL D +++ G++     D+ +  K+   + +  F   P V EE+K  LV EI +
Sbjct: 66  AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVS 125

Query: 145 KGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEQELFGI 204
               +  V     +LV+ KR+ ++ E++ EFE++Y+ L  TE+ +V+S  K++ Q L  I
Sbjct: 126 SSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQI 185

Query: 205 AKNVQRLSGAMKVKVRSFINGGLM 229
           AK VQRL+G+  V++++ I+  L+
Sbjct: 186 AKGVQRLTGSKNVRIKTVIDESLV 209

[Close]
BLAST of Carg20909 vs. Swiss-Prot
Match: sp|Q02758|ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-16
Identity = 61/212 (28.77%), Postives = 108/212 (50.94%), Query Frame = 0 

Query: 31  AHLPHRSPSRRSNSISKPPNFLSTHKTLNPLPFSSSFSSS----------SPRRSSSPSL 90
           A L H + S  S  I K  N L+    LN L  S+ +S              RRS+  +L
Sbjct: 2   ASLQHTTASLHSKHIPKTTNILTRKPILN-LSSSTFYSPKLXXXXXXXXXXXRRSTGGAL 61

Query: 91  HRR----PAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVVEEEKG 150
             R     A  YAAAL D + +  ++ ++  D  +  ++    ++  + + P V +  K 
Sbjct: 62  GARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKR 121

Query: 151 RLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKM 210
           +L+ E A   GF+        +L++ KR+ ++ +++ EFE +Y+ L  TE+V+V+S  K+
Sbjct: 122 QLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKL 181

Query: 211 QEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           +   L  IAK VQ+L+GA KV+ ++ ++  L+
Sbjct: 182 ESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLV 212

[Close]
BLAST of Carg20909 vs. Swiss-Prot
Match: sp|P11402|ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-16
Identity = 41/144 (28.47%), Postives = 85/144 (59.03%), Query Frame = 0 

Query: 85  AAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVVEEEKGRLVREIAA 144
           A+ YA+AL D +  TG++ +   DV +  ++   + +  F  +P +  + K  ++ EI  
Sbjct: 75  ASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIIT 134

Query: 145 KGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEQELFGI 204
             G +        +L++ +R+ ++ E+L+EFE +++++ GTEV +V+S  K++   L  I
Sbjct: 135 TSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQI 194

Query: 205 AKNVQRLSGAMKVKVRSFINGGLM 229
           AK VQ+++GA  V++++ I+  L+
Sbjct: 195 AKGVQKITGAKNVRIKTVIDPSLV 218

[Close]
BLAST of Carg20909 vs. Swiss-Prot
Match: sp|Q07300|ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.8e-15
Identity = 52/165 (31.52%), Postives = 91/165 (55.15%), Query Frame = 0 

Query: 66  SFSSSSPRRSSSPSLHRRPAA--GYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGG 125
           S   + PRR       R  AA   YA+AL + +   G++     D+ +  K+   + +  
Sbjct: 44  SLRLAPPRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAE 103

Query: 126 FLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERIYDELC 185
           F ++P V  EEK  L+ EIA     +  VV    ++V+  R  IL E++ EFE I++ L 
Sbjct: 104 FFDNPTVPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLT 163

Query: 186 GTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           GTEV  V+S  +++ Q+L  IA++VQ+++GA  V++++ ++  L+
Sbjct: 164 GTEVATVTSVVQLESQDLAQIAQHVQKMTGAKNVRLKTQLDPELI 208

[Close]
BLAST of Carg20909 vs. Swiss-Prot
Match: sp|Q9SSS9|ATPD_ARATH (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATPD PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12
Identity = 45/181 (24.86%), Postives = 93/181 (51.38%), Query Frame = 0 

Query: 48  PPNFLSTHKTLNPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAK 107
           PP+     ++L PL  +     ++   ++   +    A+ YA AL D ++   ++     
Sbjct: 16  PPSSFQIARSL-PLRKTFPIRINNGGNAAGARMSATAASSYAMALADVAKRNDTMELTVT 75

Query: 108 DVGRFSKVLRTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGI 167
           D+ +  +V    ++  F  +P +  E+K +++ +I      +        +LV+  R+ I
Sbjct: 76  DIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHTSNFLNVLVDANRINI 135

Query: 168 LNEVLSEFERIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGL 227
           + E++ EFE +Y++L  T++  V S  K++  +L  IAK VQ+L+GA  V+V++ I+  L
Sbjct: 136 VTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLTGAKNVRVKTVIDASL 195

Query: 228 M 229
           +
Sbjct: 196 V 195

[Close]
BLAST of Carg20909 vs. TrEMBL
Match: tr|A0A1S3AUM9|A0A1S3AUM9_CUCME (ATP synthase delta chain, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483162 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 4.6e-86
Identity = 183/232 (78.88%), Postives = 202/232 (87.07%), Query Frame = 0 

Query: 1   MDTL--TSSVSTLRVPS-TLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MDTL  TS  STLRVPS TLASSRD LHLKN +AHLPHRSP R SNSISKPPNFLST KT
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNP-LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           LNP +PF      S+PRRSSSP LHRRPA+GYAAALVDASQ+TG+IHSVAKDVGRFSK+L
Sbjct: 61  LNPSIPF------STPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLL 120

Query: 121 RTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFE 180
           R KRIG  LNDP V +EEKGRLV+EIA KGGFE+QVVKLTKML+EK  L IL EV SEF+
Sbjct: 121 RGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFD 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           RIYDELCGTEVV+VSSN+KM+E+ELFGIAKN QRLSGA+KVKVRSF++GGLM
Sbjct: 181 RIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLM 226

[Close]
BLAST of Carg20909 vs. TrEMBL
Match: tr|A0A0A0L326|A0A0A0L326_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.9e-85
Identity = 180/232 (77.59%), Postives = 202/232 (87.07%), Query Frame = 0 

Query: 1   MDTLT--SSVSTLRVPS-TLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MDTLT  S  S LRVPS TL SSRD LHLKN +AHLPHRSPSR SNSISKPPNFLST +T
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNP-LPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           LNP +PF      S+PRRSSSP LHRRPA+GYAAAL+DASQ+TG+IHSVAKDVGRFSK+L
Sbjct: 61  LNPSIPF------STPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLL 120

Query: 121 RTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFE 180
           R KRIG  LNDP V +EEKGRLV+EIA KGGFE+QVVKLTKML+EK +L IL EV SEFE
Sbjct: 121 RGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFE 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           R+YDELCGTEVV+VSS++KM+E+EL GIAKNVQRLSGA+KVKVRSFI+GGLM
Sbjct: 181 RVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 226

[Close]
BLAST of Carg20909 vs. TrEMBL
Match: tr|A0A2P4K642|A0A2P4K642_QUESU (Atp synthase delta chain, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_53768 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.7e-46
Identity = 114/231 (49.35%), Postives = 159/231 (68.83%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKN--YSAHLPHRSPSRRSNSISKPPN--FLSTHK 60
           MDTL+SSVSTL+VP+   +SR+L   K+   +    H SP    +S +K  N     THK
Sbjct: 1   MDTLSSSVSTLKVPTPYPTSRELCFFKSTPQTPQYSHLSPQTHLSSTTKTTNKTITLTHK 60

Query: 61  TLNPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           T  P   S S  SS     +SP+L+R PA+GYAAALVD +Q   S++++ KDV RF K+L
Sbjct: 61  TFTPSFLSHSQPSSF--TPNSPTLYREPASGYAAALVDIAQCNNSLNTLGKDVQRFLKIL 120

Query: 121 RTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFE 180
           R +++  FL+D F+ E++KG+++ E+  KG F + +V L KML++K ++GI+ EVL EFE
Sbjct: 121 RNEQVQEFLDDQFMSEKDKGQVIGEVVKKGRFNRHLVSLIKMLIQKNKVGIVKEVLEEFE 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFINGGL 228
           RI+DEL GT+VVLVSS  KM+E +LFGIAK VQ+LSGA KVKVR+ ++  L
Sbjct: 181 RIHDELSGTQVVLVSSATKMEEDQLFGIAKRVQKLSGATKVKVRNLVHDSL 229

[Close]
BLAST of Carg20909 vs. TrEMBL
Match: tr|A0A2N9IWM3|A0A2N9IWM3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57678 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 113/227 (49.78%), Postives = 156/227 (68.72%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKN--YSAHLPHR--SPSRRSNSISKPPNFLSTHK 60
           MD+L+SSVSTL+VP+  ++SR+L H K    ++HLP    + + ++N +S       THK
Sbjct: 1   MDSLSSSVSTLKVPALYSTSRELYHFKTTPQTSHLPPNLSASTTKTNPLSNKATTHLTHK 60

Query: 61  TLNPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           T  P  FS S +SS      SP LH +P++GYAAAL+D +Q   S+++V KDV RF K+L
Sbjct: 61  TFTPSFFSHSQASSF--TPFSPPLHLKPSSGYAAALIDIAQCNNSLNTVGKDVQRFLKLL 120

Query: 121 RTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFE 180
           R K+I   L D  + E++KG+++ E+  K  F + +V L KML+EK ++GI+ EVL EFE
Sbjct: 121 RNKQIQAVLVDQLISEKDKGQVIGEVVKKWRFNRHLVSLVKMLIEKNKVGIVKEVLEEFE 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFI 224
           RIYDEL GT+VVLVSS  KM E E+ GIAK VQ+LSGAMKVKVR+ +
Sbjct: 181 RIYDELSGTQVVLVSSATKMGEDEMVGIAKRVQKLSGAMKVKVRNLV 225

[Close]
BLAST of Carg20909 vs. TrEMBL
Match: tr|A0A2P5CL73|A0A2P5CL73_9ROSA (ATPase, OSCP/delta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_280840 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.8e-45
Identity = 115/234 (49.15%), Postives = 162/234 (69.23%), Query Frame = 0 

Query: 1   MDTLTSSVSTLRVP-----STLASSRDLLHLKNY---SAHLPHRSPSRR---SNSISKPP 60
           MDTL+SSVSTL+VP     ST  SSR+L H K+Y   + + P+ +P      S + +KP 
Sbjct: 1   MDTLSSSVSTLKVPTLHSISTTTSSRELNHFKSYVTNTLYTPNLTPHTHLFFSTTTTKPI 60

Query: 61  NFLSTHKTLNPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDV 120
           N +S+ K   P  F++    S P    SP+ HR PAAGYAAAL D +Q   S+ SV KDV
Sbjct: 61  NSISSTK---PTSFTNPIFPSPP---PSPATHRSPAAGYAAALFDVAQLNNSVDSVGKDV 120

Query: 121 GRFSKVLRTKRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILN 180
            R SK+LR+ R+   L+DPF+ EEEKGR+V+ +A KG F + +V L K+LV + ++G+L+
Sbjct: 121 ERLSKLLRSNRVRVVLSDPFLGEEEKGRVVKGLAEKGRFNRHLVCLVKLLVGRNKVGVLS 180

Query: 181 EVLSEFERIYDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFI 224
           +VL EFER+YDE+ GT+VVL+SS +KM+E+ L GIA+ VQ+L+GA+KVKVR+ +
Sbjct: 181 QVLDEFERVYDEVLGTQVVLISSIKKMEEEMLHGIAQRVQKLTGAVKVKVRNLV 228

The following BLAST results are available for this feature:
BLAST of Carg20909 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934549.12.0e-10995.18ATP synthase delta chain, chloroplastic-like [Cucurbita moschata] >XP_022934555.... [more]
XP_022975394.11.0e-10895.18ATP synthase delta chain, chloroplastic-like [Cucurbita maxima][more]
XP_022974855.15.0e-10894.30ATP synthase delta chain, chloroplastic-like [Cucurbita maxima] >XP_022974856.1 ... [more]
XP_023540771.11.9e-10793.42ATP synthase delta chain, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_008437855.17.0e-8678.88PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo][more]
BLAST of Carg20909 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09650.11.9e-1324.86ATP synthase delta-subunit gene[more]
AT4G00895.16.4e-0936.84ATPase, F1 complex, OSCP/delta subunit protein[more]
BLAST of Carg20909 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P32980|ATPD_TOBAC3.3e-1833.33ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=... [more]
sp|Q02758|ATPD_PEA1.8e-1628.77ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV... [more]
sp|P11402|ATPD_SPIOL5.2e-1628.47ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=... [more]
sp|Q07300|ATPD_SORBI9.8e-1531.52ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 ... [more]
sp|Q9SSS9|ATPD_ARATH3.5e-1224.86ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATP... [more]
BLAST of Carg20909 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AUM9|A0A1S3AUM9_CUCME4.6e-8678.88ATP synthase delta chain, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483162 ... [more]
tr|A0A0A0L326|A0A0A0L326_CUCSA3.9e-8577.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=4 SV=1[more]
tr|A0A2P4K642|A0A2P4K642_QUESU4.7e-4649.35Atp synthase delta chain, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_53768... [more]
tr|A0A2N9IWM3|A0A2N9IWM3_FAGSY3.0e-4549.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57678 PE=4 SV=1[more]
tr|A0A2P5CL73|A0A2P5CL73_9ROSA8.8e-4549.15ATPase, OSCP/delta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_280840 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: INTERPRO
TermDefinition
IPR026015ATP_synth_OSCP/delta_N_sf
IPR000711ATPase_OSCP/dsu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0045259 proton-transporting ATP synthase complex
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20909-RACarg20909-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000711ATPase, OSCP/delta subunitPRINTSPR00125ATPASEDELTAcoord: 164..178
score: 28.0
coord: 153..164
score: 27.92
coord: 84..103
score: 28.38
IPR000711ATPase, OSCP/delta subunitPFAMPF00213OSCPcoord: 87..224
e-value: 4.1E-21
score: 75.8
IPR000711ATPase, OSCP/delta subunitTIGRFAMTIGR01145TIGR01145coord: 85..228
e-value: 9.2E-18
score: 63.1
IPR000711ATPase, OSCP/delta subunitPANTHERPTHR11910ATP SYNTHASE DELTA CHAINcoord: 1..224
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyGENE3DG3DSA:1.10.520.20coord: 85..177
e-value: 2.8E-13
score: 52.4
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilySUPERFAMILYSSF47928N-terminal domain of the delta subunit of the F1F0-ATP synthasecoord: 86..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..78
NoneNo IPR availablePANTHERPTHR11910:SF8ATPASE, F1 COMPLEX, OSCP/DELTA SUBUNIT PROTEINcoord: 1..224