MELO3C006001 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006001
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP synthase subunit delta
Location	chr6 : 499617 .. 500684 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCCTTTCCAATCCTCTCTCCCTTCGTTCGTTCTGTCCTCCATGGATACTTTAACAACAACCTCCGTTTCTTCAACTCTCAGAGTTCCATCAAGAACCCTAGCTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTCCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCTAAAACCCTTAATCCCTCCATCCCCTTTTCCACCCCCCGCCGTTCCTCTTCTCCACTCCTCCACCGACGCCCCGCCTCCGGTTACGCCGCTGCACTCGTCGACGCATCTCAATCTACCGGTACGATTCACTCGGTGGCGAAGGATGTCGGAAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATCGGCAGGGTTTTGAATGATCCGTTGGTGGGAGATGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGAGGGTTTGAAAGGCAGGTGGTGAAGTTAACGAAGATGCTGATTGAGAAGTGCAACCTGAGGATTTTAACGGAGGTGTTTAGTGAATTCGATAGGATTTATGATGAGCTTTGTGGAACGGAAGTGGTGATGGTTTCTTCGAACAAGAAGATGGAGGAAGAAGAGTTGTTTGGGATTGCGAAGAATGCGCAGAGGCTGAGTGGGGCTGTGAAAGTGAAGGTCAGAAGCTTCGTTCATGGGGGATTAATGGTGTAGTGTTGATACAATCAATAACAATCTGTTGGATATGAAGTTTGTAATTCATGAACGACTGCAAAGATGGATTTCAGAATACTGTTATTGAATCGAAATTGTTGGATTAAAGTTCTTATTTACAATCACCATGATTCACAACATCACTTTATGAGGAAATGTTCTCCCTAAACCAATTTTGGAAACCTAAGGATTATTGTCGACAAGGCAACTTTTAGAACGGTGATTTCTTTGATTTAGTTTGATGTTCTAATCGAATATCATTTACATCGGGAACATTGTTAATACCTTTTCATCTTTGTCACAATTTTGAAGAAGTGAACAAATTTGCTCCCTTCTGTGC

mRNA sequence

ACTTCCCTTTCCAATCCTCTCTCCCTTCGTTCGTTCTGTCCTCCATGGATACTTTAACAACAACCTCCGTTTCTTCAACTCTCAGAGTTCCATCAAGAACCCTAGCTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTCCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCTAAAACCCTTAATCCCTCCATCCCCTTTTCCACCCCCCGCCGTTCCTCTTCTCCACTCCTCCACCGACGCCCCGCCTCCGGTTACGCCGCTGCACTCGTCGACGCATCTCAATCTACCGGTACGATTCACTCGGTGGCGAAGGATGTCGGAAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATCGGCAGGGTTTTGAATGATCCGTTGGTGGGAGATGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGAGGGTTTGAAAGGCAGGTGGTGAAGTTAACGAAGATGCTGATTGAGAAGTGCAACCTGAGGATTTTAACGGAGGTGTTTAGTGAATTCGATAGGATTTATGATGAGCTTTGTGGAACGGAAGTGGTGATGGTTTCTTCGAACAAGAAGATGGAGGAAGAAGAGTTGTTTGGGATTGCGAAGAATGCGCAGAGGCTGAGTGGGGCTGTGAAAGTGAAGGTCAGAAGCTTCGTTCATGGGGGATTAATGGTGTAGTGTTGATACAATCAATAACAATCTGTTGGATATGAAGTTTGTAATTCATGAACGACTGCAAAGATGGATTTCAGAATACTGTTATTGAATCGAAATTGTTGGATTAAAGTTCTTATTTACAATCACCATGATTCACAACATCACTTTATGAGGAAATGTTCTCCCTAAACCAATTTTGGAAACCTAAGGATTATTGTCGACAAGGCAACTTTTAGAACGGTGATTTCTTTGATTTAGTTTGATGTTCTAATCGAATATCATTTACATCGGGAACATTGTTAATACCTTTTCATCTTTGTCACAATTTTGAAGAAGTGAACAAATTTGCTCCCTTCTGTGC

Coding sequence (CDS)

ATGGATACTTTAACAACAACCTCCGTTTCTTCAACTCTCAGAGTTCCATCAAGAACCCTAGCTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTCCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCTAAAACCCTTAATCCCTCCATCCCCTTTTCCACCCCCCGCCGTTCCTCTTCTCCACTCCTCCACCGACGCCCCGCCTCCGGTTACGCCGCTGCACTCGTCGACGCATCTCAATCTACCGGTACGATTCACTCGGTGGCGAAGGATGTCGGAAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATCGGCAGGGTTTTGAATGATCCGTTGGTGGGAGATGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGAGGGTTTGAAAGGCAGGTGGTGAAGTTAACGAAGATGCTGATTGAGAAGTGCAACCTGAGGATTTTAACGGAGGTGTTTAGTGAATTCGATAGGATTTATGATGAGCTTTGTGGAACGGAAGTGGTGATGGTTTCTTCGAACAAGAAGATGGAGGAAGAAGAGTTGTTTGGGATTGCGAAGAATGCGCAGAGGCTGAGTGGGGCTGTGAAAGTGAAGGTCAGAAGCTTCGTTCATGGGGGATTAATGGTGTAG

Protein sequence

MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKTLNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV*

Homology

[Close]

BLAST of MELO3C006001 vs. Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-21
Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 1


Query: 29  LKNPTAHLPHRSPPRTSNSISKPP-------NFLSTPKTLNPSIPFSTPRRSSSPLLHRR 88
           L++ TA L  +  P+T+N +++ P        F S    L   +P +  RRS+   L  R
Sbjct: 4   LQHTTASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLKLKLKLPLTKTRRSTGGALGAR 63

Query: 89  PAS----GYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLV 148
            +S     YAAAL D + S  T+ ++  D  +  +L    ++    + P+V D  K +L+
Sbjct: 64  MSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLI 123

Query: 149 KEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDELCGTEVVMVSSNKKMEEE 208
            E A   GF+        +LI+   + ++ ++  EF+ +Y+ L  TE+V+V+S  K+E  
Sbjct: 124 GEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESH 183

Query: 209 ELFGIAKNAQRLSGAVKVKVRSFVHGGLM 227
            L  IAK  Q+L+GA KV+ ++ +   L+
Sbjct: 184 HLAQIAKQVQKLTGAKKVRTKTLLDPSLV 212

[Close]

BLAST of MELO3C006001 vs. Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-17
Identity = 59/197 (29.95%), Postives = 94/197 (47.72%), Query Frame = 1


Query: 39  RSPPRTSNSISKPPNFLS------TPKTLNPSIPFSTPRRSSSPLLHRRPASG---YAAA 98
           RSPP T   IS P   LS       PK         T RR       +  AS    YA A
Sbjct: 14  RSPPPTQ-IISGPTAKLSFSGGLKLPKLTIKLRSNRTSRRGGGAAGSKMVASAAGSYANA 73

Query: 99  LVDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQ 158
           L D ++S GT+     D+ +  K+   + +      P+VG+E+K  LV EI      +  
Sbjct: 74  LADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPH 133

Query: 159 VVKLTKMLIEKCNLRILTEVFSEFDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRL 218
           V     +L++   + ++ E+  EF+++Y+ L  TE+ +V+S  K+E + L  IAK  QRL
Sbjct: 134 VANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQIAKGVQRL 193

Query: 219 SGAVKVKVRSFVHGGLM 227
           +G+  V++++ +   L+
Sbjct: 194 TGSKNVRIKTVIDESLV 209

[Close]

BLAST of MELO3C006001 vs. Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-16
Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 63  PSIPFSTPRRSSSPLLHRRPASG--YAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 122
           PS+  + PRR    +  R  A+   YA+AL + +   GT+     D+ +  K+   + + 
Sbjct: 43  PSLRLAPPRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVA 102

Query: 123 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 182
              ++P V  EEK  L+ EIA     +  VV    ++++     IL E+  EF+ I++ L
Sbjct: 103 EFFDNPTVPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSL 162

Query: 183 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRS 220
            GTEV  V+S  ++E ++L  IA++ Q+++GA  V++++
Sbjct: 163 TGTEVATVTSVVQLESQDLAQIAQHVQKMTGAKNVRLKT 201

[Close]

BLAST of MELO3C006001 vs. Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 5.3e-15
Identity = 39/144 (27.08%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 83  ASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAV 142
           AS YA+AL D +  TGT+ +   DV +  ++   + +     +P++  + K  ++ EI  
Sbjct: 75  ASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIIT 134

Query: 143 KGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDELCGTEVVMVSSNKKMEEEELFGI 202
             G +        +LI+   + ++ E+ +EF+ +++++ GTEV +V+S  K+E + L  I
Sbjct: 135 TSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQI 194

Query: 203 AKNAQRLSGAVKVKVRSFVHGGLM 227
           AK  Q+++GA  V++++ +   L+
Sbjct: 195 AKGVQKITGAKNVRIKTVIDPSLV 218

[Close]

BLAST of MELO3C006001 vs. Swiss-Prot
Match: ATPD_CHLRE (ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-13
Identity = 39/145 (26.90%), Postives = 81/145 (55.86%), Query Frame = 1


Query: 83  ASGYAAALVDASQSTGTIHSVAKDVGRFSKLLR-GKRIGRVLNDPLVGDEEKGRLVKEIA 142
           +  YA ALV+ +   G + +V  DV   + L++   ++  ++ +P+V  ++K  ++ +IA
Sbjct: 39  SESYAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIA 98

Query: 143 VKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDELCGTEVVMVSSNKKMEEEELFG 202
            + GF++  +    +L+EK  L ++ E+   F+ +Y ++  T+V  + S  K+E+E+ F 
Sbjct: 99  KEAGFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFL 158

Query: 203 IAKNAQRLSGAVKVKVRSFVHGGLM 227
           IAK  Q L+G+  +K++  +   L+
Sbjct: 159 IAKKLQELTGSKNIKLKPVIDSSLI 183

[Close]

BLAST of MELO3C006001 vs. TrEMBL
Match: A0A0A0L326_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119340 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 3.9e-113
Identity = 211/227 (92.95%), Postives = 218/227 (96.04%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60
           MDTLTT SVSS LRVPSRTL SSRDFLHLKNPTAHLPHRSP RTSNSISKPPNFLSTP+T
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAAL+DASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEK  L ILTEVFSEF+R+YDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV 228
           CGTEVVMVSS+KKMEEEEL GIAKN QRLSGA+KVKVRSF+HGGLMV
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 227

[Close]

BLAST of MELO3C006001 vs. TrEMBL
Match: A0A0D2U272_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G127400 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 105/229 (45.85%), Postives = 144/229 (62.88%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLK--NPTAHLPHRSPPRTSNSISKPPNFLSTP 60
           MD L++ SVSS L+ P+   ++ R    LK  N   HLP  SP R     +  P  +ST 
Sbjct: 1   MDPLSS-SVSSRLK-PTNFNSTPRQLHPLKPLNRPRHLPPPSPQRPLLFSTTKPTTISTS 60

Query: 61  KTLN-----PSIPFSTPRRSSSPL-LHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSK 120
            T       P  P  T    SS L +HR PA+GYAAAL+D +QSTG++H V +DV + S+
Sbjct: 61  FTHKNLTALPIFPHPTSLLPSSSLHVHRTPATGYAAALLDTTQSTGSLHEVRRDVRKLSR 120

Query: 121 LLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSE 180
           LL+  +I  +LNDP +GD+EKG+ +KE+A KG F + +  L K+++EK  L I++EV  E
Sbjct: 121 LLQNSQIQALLNDPFLGDQEKGKAMKELAKKGKFNKHLFNLLKVMVEKNKLGIVSEVLEE 180

Query: 181 FDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFV 222
           F+R+YDEL GT+ V VSS K + E+ LF IA   Q LSGAVKVKV++ V
Sbjct: 181 FERVYDELIGTKQVWVSSEKMIGEDMLFKIAMKVQNLSGAVKVKVKNLV 227

[Close]

BLAST of MELO3C006001 vs. TrEMBL
Match: W9RLH4_9ROSA (ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.2e-39
Identity = 98/231 (42.42%), Postives = 149/231 (64.50%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFL--HLKNPTAH-------LPHRSPPRTSNSISKP 60
           MD L+++   STL+VP+    +SR  L  H K   +        LP+++P  T+ +   P
Sbjct: 1   MDPLSSSV--STLKVPTLHSTTSRHELLTHFKTTPSKNLPYSSLLPNKTPTFTTQNPFTP 60

Query: 61  PNFLSTPKTLNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFS 120
            +F ST  T + + P  +PR    P+ HR PA+GYAAAL+D +Q+  ++ SV +DV R  
Sbjct: 61  SSFSSTSPTRSLTAPSPSPR---PPIHHRNPATGYAAALLDVAQANNSVDSVGRDVERLL 120

Query: 121 KLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIE-KCNLRILTEVF 180
            L+R KR+  VL    VG++EKG++VK++A KG F R +V+L KML++ K ++ I+ +V 
Sbjct: 121 NLMRNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDKKKDVGIIRQVL 180

Query: 181 SEFDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFV 222
            EF+R+YD++  T+VV+VSS KK+EE  +F IAK  Q L+GA+KVKVR+ V
Sbjct: 181 EEFERVYDQMLRTQVVLVSSAKKIEENNMFWIAKRVQTLTGALKVKVRNLV 226

[Close]

BLAST of MELO3C006001 vs. TrEMBL
Match: M1A9Y1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007007 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.2e-39
Identity = 108/231 (46.75%), Postives = 146/231 (63.20%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNP----TAHLPHRSPPRTSNSISKPPNFLS 60
           MDTL+T SVSS L+V S     S DF H KNP    ++  PH + P+ + SIS   N  +
Sbjct: 1   MDTLST-SVSS-LKV-SNLRRYSADFHHFKNPYTTSSSSSPHFNFPKPT-SISNKTNSFT 60

Query: 61  TPKTLN-PSIPFSTPRR---SSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSK 120
             KT N P +  + P +   S     H R +SGYAAAL+D +    ++  + KDV R S+
Sbjct: 61  HKKTTNFPFLSKTPPPKQPFSKHQTAHTRASSGYAAALIDIANCNNSLEKLDKDVRRLSR 120

Query: 121 LLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSE 180
            LR  ++  ++ DP VG++EKG +VKEI  KG F + +V + K+L+EK  L I+ EV  E
Sbjct: 121 WLRNDQLRVLMTDPFVGNQEKGYVVKEILSKGNFNKHLVGVVKLLVEKNKLEIVGEVLME 180

Query: 181 FDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGA--VKVKVRSFV 222
           F+RIYD+LCGT+VV+VSS  KME+ E+FGIAK  Q LSGA  VKVKVR+ V
Sbjct: 181 FERIYDQLCGTQVVLVSSEVKMEKNEVFGIAKKVQELSGAERVKVKVRNLV 227

[Close]

BLAST of MELO3C006001 vs. TrEMBL
Match: B9SBC4_RICCO (ATP synthase delta chain, putative OS=Ricinus communis GN=RCOM_0715620 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 105/225 (46.67%), Postives = 143/225 (63.56%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTA--HLPHRSPPRTSNSISKPPNFLS-- 60
           MDTL+ +   STL++P+   +  R F H K P+A   LP        NSIS     +   
Sbjct: 1   MDTLSNSV--STLKLPALH-SKPRQFYHFKTPSASQQLPPTHFTTKPNSISNRNTNIQIL 60

Query: 61  TPKTLNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRG 120
           + K+L  S  F  P     P  H+ PA+GYAAAL+D +Q   ++ +V KDV R SKLLR 
Sbjct: 61  SLKSLTNSPSFLKP----PPNTHQNPATGYAAALLDIAQFNNSLETVEKDVKRLSKLLRN 120

Query: 121 KRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRI 180
           ++I  +L +PLVGD+EKG ++KE+  KG F   +V+L  MLIE+  + I+ EV  EF RI
Sbjct: 121 EQIQCILINPLVGDKEKGLVLKEVGKKGKFNSILVRLLTMLIERNKIMIVNEVLVEFQRI 180

Query: 181 YDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFV 222
           +DEL GT+VV+VSS KKMEE+ LF IA++ Q+ SGAVKVKVR+ V
Sbjct: 181 FDELSGTKVVLVSSKKKMEEDALFRIAQSVQKFSGAVKVKVRNLV 218

[Close]

BLAST of MELO3C006001 vs. TAIR10
Match: AT4G09650.1 (AT4G09650.1 ATP synthase delta-subunit gene)

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-14
Identity = 37/144 (25.69%), Postives = 73/144 (50.69%), Query Frame = 1


Query: 83  ASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAV 142
           AS YA AL D ++   T+     D+ +  ++    ++     +P +  E+K +++ +I  
Sbjct: 52  ASSYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVK 111

Query: 143 KGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDELCGTEVVMVSSNKKMEEEELFGI 202
               +        +L++   + I+TE+  EF+ +Y++L  T++  V S  K+E  +L  I
Sbjct: 112 SSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQI 171

Query: 203 AKNAQRLSGAVKVKVRSFVHGGLM 227
           AK  Q+L+GA  V+V++ +   L+
Sbjct: 172 AKQVQKLTGAKNVRVKTVIDASLV 195

[Close]

BLAST of MELO3C006001 vs. TAIR10
Match: AT4G00895.1 (AT4G00895.1 ATPase, F1 complex, OSCP/delta subunit protein)

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-13
Identity = 65/189 (34.39%), Postives = 94/189 (49.74%), Query Frame = 1


Query: 8   SVSSTLR--VPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKTLNPSI 67
           S+SS  +  V + T ASS +   L  PT+     SP   S S ++ PNFL   K ++  +
Sbjct: 26  SISSRFKSTVNATTSASSTN---LSKPTSS----SPSSASYSQNRNPNFL---KAISFHL 85

Query: 68  PFSTPRRSSSPL---LHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIGRV 127
           P + P R  +P    +H + ASG+AAALV   QS   +    +DV R             
Sbjct: 86  PQTKPSRVVTPPPPPVHDKAASGFAAALVSVCQSKNCLGRTQEDVRR------------- 145

Query: 128 LNDPLVGDEEKGR--LVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 187
           L + LVG+E+K    LV ++  +G F +    L KMLI +    IL +V  EF+RI +EL
Sbjct: 146 LMEFLVGEEKKRNKVLVNDVVERGKFGKHFKGLVKMLIARGKSGILVDVLMEFERICNEL 191

Query: 188 CGTEVVMVS 190
              ++V VS
Sbjct: 206 VSKKLVWVS 191

[Close]

BLAST of MELO3C006001 vs. NCBI nr
Match: gi|659074899|ref|XP_008437855.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 444.1 bits (1141), Expect = 1.5e-121
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60
           MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180

Query: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV 228
           CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV
Sbjct: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV 227

[Close]

BLAST of MELO3C006001 vs. NCBI nr
Match: gi|449433016|ref|XP_004134294.1| (PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 5.5e-113
Identity = 211/227 (92.95%), Postives = 218/227 (96.04%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60
           MDTLTT SVSS LRVPSRTL SSRDFLHLKNPTAHLPHRSP RTSNSISKPPNFLSTP+T
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAAL+DASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEK  L ILTEVFSEF+R+YDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV 228
           CGTEVVMVSS+KKMEEEEL GIAKN QRLSGA+KVKVRSF+HGGLMV
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 227

[Close]

BLAST of MELO3C006001 vs. NCBI nr
Match: gi|720036813|ref|XP_010267478.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 101/232 (43.53%), Postives = 146/232 (62.93%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTA-----HLPHRSPPRTSNSISKPPNFL 60
           MDTL+T SVSS L+ P     + R+  H ++P       H  H S  R +++ +KP    
Sbjct: 1   MDTLST-SVSS-LKAPGLPTTAPRETFHFRSPHTPFLLPHYHHLSTHRPNSTFNKPSLPF 60

Query: 61  STPKTLNPSIPFSTPR--RSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKL 120
           ++    +P +P S P   RS SP++HR+ ASGYAAAL+D ++ +  + +V  DV RFS+L
Sbjct: 61  TSKSYKSPFLPSSQPSSLRSPSPVVHRKAASGYAAALMDRARCSNVLEAVEHDVRRFSRL 120

Query: 121 LRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEF 180
              + +  +LNDP V D+ KG  VK++  KG F++ +  L KM+IEK  + ++ EV  EF
Sbjct: 121 FHSEHLRAILNDPFVDDKTKGEEVKQVVEKGRFQKHLAVLLKMMIEKNKMGMVNEVLQEF 180

Query: 181 DRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGL 226
            RIYDEL GT +V+VSS +KMEE++LFGIAK  Q LSGA+K+KVR  +   L
Sbjct: 181 QRIYDELSGTRIVLVSSARKMEEDQLFGIAKRVQSLSGAMKIKVRHLIDESL 230

[Close]

BLAST of MELO3C006001 vs. NCBI nr
Match: gi|823208931|ref|XP_012437790.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii])

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 105/229 (45.85%), Postives = 144/229 (62.88%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLK--NPTAHLPHRSPPRTSNSISKPPNFLSTP 60
           MD L++ SVSS L+ P+   ++ R    LK  N   HLP  SP R     +  P  +ST 
Sbjct: 1   MDPLSS-SVSSRLK-PTNFNSTPRQLHPLKPLNRPRHLPPPSPQRPLLFSTTKPTTISTS 60

Query: 61  KTLN-----PSIPFSTPRRSSSPL-LHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSK 120
            T       P  P  T    SS L +HR PA+GYAAAL+D +QSTG++H V +DV + S+
Sbjct: 61  FTHKNLTALPIFPHPTSLLPSSSLHVHRTPATGYAAALLDTTQSTGSLHEVRRDVRKLSR 120

Query: 121 LLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSE 180
           LL+  +I  +LNDP +GD+EKG+ +KE+A KG F + +  L K+++EK  L I++EV  E
Sbjct: 121 LLQNSQIQALLNDPFLGDQEKGKAMKELAKKGKFNKHLFNLLKVMVEKNKLGIVSEVLEE 180

Query: 181 FDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFV 222
           F+R+YDEL GT+ V VSS K + E+ LF IA   Q LSGAVKVKV++ V
Sbjct: 181 FERVYDELIGTKQVWVSSEKMIGEDMLFKIAMKVQNLSGAVKVKVKNLV 227

[Close]

BLAST of MELO3C006001 vs. NCBI nr
Match: gi|970030682|ref|XP_015076626.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Solanum pennellii])

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 107/234 (45.73%), Postives = 147/234 (62.82%), Query Frame = 1


Query: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNP-------TAHLPHRSPPRTSNSISKPPN 60
           MDTL+T SVSS L++P+    S+ DF H KNP       ++  PH + P+ + SIS   N
Sbjct: 1   MDTLST-SVSS-LKLPNIRRYSA-DFHHFKNPYTTTTSSSSSSPHFNFPKPT-SISSKTN 60

Query: 61  FLSTPKTLNPSIPFSTPRR----SSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGR 120
             +  KT N   P  TP      S     H R +SGYAAAL+D      ++  + KDV +
Sbjct: 61  SFTHKKTTNFPFPSKTPPPKQPFSKHQTAHTRASSGYAAALIDIGNCNNSLEKLDKDVRK 120

Query: 121 FSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEV 180
            S+ LR  ++  ++ DP VG++EKG +VKEI  KG F +Q+V + K+L+EK  L I+ EV
Sbjct: 121 LSRWLRHDQVRVLMTDPFVGNQEKGYVVKEILSKGNFNKQLVGVVKLLVEKNKLGIVGEV 180

Query: 181 FSEFDRIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGA--VKVKVRSFV 222
             EF+RIYD+LCGT+VV+VSS  KME++E FGIAK  Q+LSGA  VKVKV++ V
Sbjct: 181 LMEFERIYDQLCGTQVVLVSSEVKMEKDEAFGIAKKVQQLSGAERVKVKVKNLV 230

The following BLAST results are available for this feature:

BLAST of MELO3C006001 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPD_PEA	8.5e-21	29.19	ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1	[more]
ATPD_TOBAC	5.7e-17	29.95	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1	[more]
ATPD_SORBI	3.7e-16	29.56	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1	[more]
ATPD_SPIOL	5.3e-15	27.08	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2	[more]
ATPD_CHLRE	2.9e-13	26.90	ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=...	[more]

BLAST of MELO3C006001 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L326_CUCSA	3.9e-113	92.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119340 PE=4 SV=1	[more]
A0A0D2U272_GOSRA	1.3e-39	45.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G127400 PE=4 SV=1	[more]
W9RLH4_9ROSA	8.2e-39	42.42	ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1	[more]
M1A9Y1_SOLTU	8.2e-39	46.75	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007007 PE=4 SV=1	[more]
B9SBC4_RICCO	1.1e-38	46.67	ATP synthase delta chain, putative OS=Ricinus communis GN=RCOM_0715620 PE=4 SV=1	[more]

BLAST of MELO3C006001 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09650.1	8.2e-14	25.69	ATP synthase delta-subunit gene	[more]
AT4G00895.1	5.3e-13	34.39	ATPase, F1 complex, OSCP/delta subunit protein	[more]

BLAST of MELO3C006001 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074899\|ref\|XP_008437855.1\|	1.5e-121	100.00	PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo]	[more]
gi\|449433016\|ref\|XP_004134294.1\|	5.5e-113	92.95	PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus]	[more]
gi\|720036813\|ref\|XP_010267478.1\|	1.3e-42	43.53	PREDICTED: ATP synthase delta chain, chloroplastic [Nelumbo nucifera]	[more]
gi\|823208931\|ref\|XP_012437790.1\|	1.8e-39	45.85	PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii]	[more]
gi\|970030682\|ref\|XP_015076626.1\|	5.3e-39	45.73	PREDICTED: ATP synthase subunit delta, chloroplastic [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000711	ATPase_OSCP/dsu
IPR026015	ATP_synth_OSCP/delta_N_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0045259	proton-transporting ATP synthase complex
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49711	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006001T1	MELO3C006001T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49711	MU49711	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 57..221 score: 1.2
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 84..220 score: 8.2
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	GENE3D	G3DSA:1.10.520.20		coord: 84..179 score: 1.1
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	unknown	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 83..180 score: 3.53
None	No IPR available	PANTHER	PTHR11910:SF8	SUBFAMILY NOT NAMED	coord: 57..221 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006001	Csa3G119340	Cucumber (Chinese Long) v2	cumeB236
MELO3C006001	Cla021131	Watermelon (97103) v1	mewmB461
MELO3C006001	ClCG05G000620	Watermelon (Charleston Gray)	mewcgB427
MELO3C006001	Cla97C05G080690	Watermelon (97103) v2	mewmbB434
MELO3C006001	Bhi01G000379	Wax gourd	mewgoB540
MELO3C006001	CSPI03G07720	Wild cucumber (PI 183967)	cpimeB230
MELO3C006001	Cucsa.259470	Cucumber (Gy14) v1	cgymeB439
MELO3C006001	Lsi05G021520	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006001	CsGy3G007850	Cucumber (Gy14) v2	cgybmeB200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006001	Bottle gourd (USVL1VR-Ls)	lsimeB031
MELO3C006001	Silver-seed gourd	carmeB0128
MELO3C006001	Silver-seed gourd	carmeB0968
MELO3C006001	Cucumber (Chinese Long) v3	cucmeB236
MELO3C006001	Cucumber (Chinese Long) v3	cucmeB411
MELO3C006001	Watermelon (97103) v2	mewmbB421
MELO3C006001	Wax gourd	mewgoB523
MELO3C006001	Melon (DHL92) v3.5.1	memeB018
MELO3C006001	Cucumber (Gy14) v1	cgymeB369
MELO3C006001	Cucurbita maxima (Rimu)	cmameB009
MELO3C006001	Cucurbita maxima (Rimu)	cmameB242
MELO3C006001	Cucurbita maxima (Rimu)	cmameB766
MELO3C006001	Cucurbita maxima (Rimu)	cmameB771
MELO3C006001	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006001	Cucurbita moschata (Rifu)	cmomeB572
MELO3C006001	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006001	Wild cucumber (PI 183967)	cpimeB399
MELO3C006001	Cucumber (Chinese Long) v2	cumeB402
MELO3C006001	Watermelon (Charleston Gray)	mewcgB420
MELO3C006001	Watermelon (97103) v1	mewmB478
MELO3C006001	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006001	Cucurbita pepo (Zucchini)	cpemeB698
MELO3C006001	Cucurbita pepo (Zucchini)	cpemeB815