Csa3G119340 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G119340
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATP synthase; contains IPR000711 (ATPase, F1 complex, OSCP/delta subunit), IPR026015 (F1F0 ATP synthase OSCP/delta subunit, N-terminal domain)
Location	Chr3 : 6649162 .. 6650347 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCCCAACATCTTCTTCTACTGAAGACGTGAATGAACAGAGCTTAACAACAACGACTGAGTTGCATCATCGCCATTGACAACCAAAGCTTGAAAAAGAAGAACGAATGAAAAATCAATGGGTTTCTTTTTGTTCTTTTCGAAATTCGAAGAAACGAGTGGCTAAGAAATTTTCCTTATCCTTGGTTGTTGCAATTTTAGTTTCACATAAATCCAATCCCCAACACTTCCCTTTCCATTAATCTCTCCGTTCGTTCTCTCCTCCATGGATACTTTAACAACACCCTCTGTTTCTTCAGCTCTCAGAGTTCCGTCAAGAACCCTAACTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCCCAAACCCTAAATCCCTCCATCCCCTTTTCCACCCCCCGCCGCTCCTCTTCTCCACTCCTCCACCGACGCCCTGCCTCAGGTTACGCCGCTGCACTCCTCGACGCATCTCAATCTACCGGCACGATTCACTCGGTGGCGAAGGATGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATTGGAAGGGTCTTGAATGATCCGTTGGTGGGAGACGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGTGGGTTTGAGAGGCAGGTGGTGAAGTTAACGAAGATGCTGATTGAGAAGAGCAAACTAAGTATTTTAACGGAGGTGTTTAGCGAATTCGAAAGGGTTTATGATGAGCTCTGTGGAACGGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGGAGGAAGAAGAGTTGATTGGGATTGCGAAGAACGTGCAAAGGCTGAGTGGGGCTATCAAAGTGAAGGTCAGAAGCTTCATTCATGGCGGATTAATGGTTTAGAGTTGATACAATCAATAGCAATATGTTGGATATGAAGTTTGTAATTCATGAACGATTGCAAAGATTTCAGAATACTGCTATCGAATCAAAATTGTTGGATTGAAGTTCTTATGTACAATCACCATGATTCACAACATCACATTTTTTATCCAAAACCAATTTTGGAAATCAAAGGATTGTTGTCTACAAGGCAATCTTTGATTGTGTAATTCAAATCACTACATAATCTCACAACAAC

mRNA sequence

ATGGATACTTTAACAACACCCTCTGTTTCTTCAGCTCTCAGAGTTCCGTCAAGAACCCTAACTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCCCAAACCCTAAATCCCTCCATCCCCTTTTCCACCCCCCGCCGCTCCTCTTCTCCACTCCTCCACCGACGCCCTGCCTCAGGTTACGCCGCTGCACTCCTCGACGCATCTCAATCTACCGGCACGATTCACTCGGTGGCGAAGGATGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATTGGAAGGGTCTTGAATGATCCGTTGGTGGGAGACGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGTGGGTTTGAGAGGCAGGTGGTGAAGTTAACGAAGATGCTGATTGAGAAGAGCAAACTAAGTATTTTAACGGAGGTGTTTAGCGAATTCGAAAGGGTTTATGATGAGCTCTGTGGAACGGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGGAGGAAGAAGAGTTGATTGGGATTGCGAAGAACGTGCAAAGGCTGAGTGGGGCTATCAAAGTGAAGGTCAGAAGCTTCATTCATGGCGGATTAATGGTTTAG

Coding sequence (CDS)

ATGGATACTTTAACAACACCCTCTGTTTCTTCAGCTCTCAGAGTTCCGTCAAGAACCCTAACTTCATCTCGCGACTTTCTTCACCTCAAGAATCCCACCGCTCATCTCCCTCATCGCTCCCCTTCTCGTACATCCAACTCAATCTCAAAACCTCCAAATTTTCTCTCCACTCCCCAAACCCTAAATCCCTCCATCCCCTTTTCCACCCCCCGCCGCTCCTCTTCTCCACTCCTCCACCGACGCCCTGCCTCAGGTTACGCCGCTGCACTCCTCGACGCATCTCAATCTACCGGCACGATTCACTCGGTGGCGAAGGATGTCGGGAGATTCTCGAAGCTGCTGAGAGGGAAGCGAATTGGAAGGGTCTTGAATGATCCGTTGGTGGGAGACGAGGAGAAAGGGCGACTGGTGAAGGAAATTGCAGTGAAGGGTGGGTTTGAGAGGCAGGTGGTGAAGTTAACGAAGATGCTGATTGAGAAGAGCAAACTAAGTATTTTAACGGAGGTGTTTAGCGAATTCGAAAGGGTTTATGATGAGCTCTGTGGAACGGAAGTGGTGATGGTTTCTTCGAGCAAGAAGATGGAGGAAGAAGAGTTGATTGGGATTGCGAAGAACGTGCAAAGGCTGAGTGGGGCTATCAAAGTGAAGGTCAGAAGCTTCATTCATGGCGGATTAATGGTTTAG

Protein sequence

MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV*

Homology

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BLAST of Csa3G119340 vs. Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 63/209 (30.14%), Postives = 106/209 (50.72%), Query Frame = 1


Query: 29  LKNPTAHLPHRSPSRTSNSISKPP-------NFLSTPQTLNPSIPFSTPRRSSSPLLHRR 88
           L++ TA L  +   +T+N +++ P        F S    L   +P +  RRS+   L  R
Sbjct: 4   LQHTTASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLKLKLKLPLTKTRRSTGGALGAR 63

Query: 89  PAS----GYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLV 148
            +S     YAAAL D + S  T+ ++  D  +  +L    ++    + P+V D  K +L+
Sbjct: 64  MSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLI 123

Query: 149 KEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEE 208
            E A   GF+        +LI+  ++ ++ ++  EFE VY+ L  TE+V+V+S  K+E  
Sbjct: 124 GEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESH 183

Query: 209 ELIGIAKNVQRLSGAIKVKVRSFIHGGLM 227
            L  IAK VQ+L+GA KV+ ++ +   L+
Sbjct: 184 HLAQIAKQVQKLTGAKKVRTKTLLDPSLV 212

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BLAST of Csa3G119340 vs. Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18
Identity = 47/144 (32.64%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 83  ASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAV 142
           A  YA AL D ++S GT+     D+ +  K+   + +      P+VG+E+K  LV EI  
Sbjct: 66  AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVS 125

Query: 143 KGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEEELIGI 202
               +  V     +L++  ++ ++ E+  EFE+VY+ L  TE+ +V+S  K+E + L  I
Sbjct: 126 SSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQI 185

Query: 203 AKNVQRLSGAIKVKVRSFIHGGLM 227
           AK VQRL+G+  V++++ I   L+
Sbjct: 186 AKGVQRLTGSKNVRIKTVIDESLV 209

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BLAST of Csa3G119340 vs. Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 59/211 (27.96%), Postives = 106/211 (50.24%), Query Frame = 1


Query: 11  SALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQTLNPSIPFSTP 70
           +ALR+ S TL           P A     + S  + +  +  +F    + L PS+  + P
Sbjct: 2   AALRLASFTL----------RPAAAAAASASSGATPAAPRSASFARAARGL-PSLRLAPP 61

Query: 71  RRSSSPLLHRRPASG--YAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLV 130
           RR    +  R  A+   YA+AL + +   GT+     D+ +  K+   + +    ++P V
Sbjct: 62  RRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTV 121

Query: 131 GDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGTEVVMV 190
             EEK  L+ EIA     +  VV    ++++  + +IL E+  EFE +++ L GTEV  V
Sbjct: 122 PREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATV 181

Query: 191 SSSKKMEEEELIGIAKNVQRLSGAIKVKVRS 220
           +S  ++E ++L  IA++VQ+++GA  V++++
Sbjct: 182 TSVVQLESQDLAQIAQHVQKMTGAKNVRLKT 201

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BLAST of Csa3G119340 vs. Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-17
Identity = 63/224 (28.12%), Postives = 110/224 (49.11%), Query Frame = 1


Query: 29  LKNPTAHLPHRSPSRTSNSISKPPNFLSTPQTLNPSIPFSTPRRSSS----PL------- 88
           L+NP A       SRT+ +++     LST  T +   PFS    SS+    PL       
Sbjct: 4   LQNPVA-----LQSRTTTAVAA----LSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTA 63

Query: 89  --LHRRP-------------ASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRV 148
             L  +P             AS YA+AL D +  TGT+ +   DV +  ++   + +   
Sbjct: 64  SKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYF 123

Query: 149 LNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCG 208
             +P++  + K  ++ EI    G +        +LI+  +++++ E+ +EFE V++++ G
Sbjct: 124 FANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITG 183

Query: 209 TEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 227
           TEV +V+S  K+E + L  IAK VQ+++GA  V++++ I   L+
Sbjct: 184 TEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVIDPSLV 218

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BLAST of Csa3G119340 vs. Swiss-Prot
Match: ATPD_ARATH (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-14
Identity = 41/144 (28.47%), Postives = 77/144 (53.47%), Query Frame = 1


Query: 83  ASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAV 142
           AS YA AL D ++   T+     D+ +  ++    ++     +P +  E+K +++ +I  
Sbjct: 52  ASSYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVK 111

Query: 143 KGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEEELIGI 202
               +        +L++ ++++I+TE+  EFE VY++L  T++  V S  K+E  +L  I
Sbjct: 112 SSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQI 171

Query: 203 AKNVQRLSGAIKVKVRSFIHGGLM 227
           AK VQ+L+GA  V+V++ I   L+
Sbjct: 172 AKQVQKLTGAKNVRVKTVIDASLV 195

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BLAST of Csa3G119340 vs. TrEMBL
Match: A0A0A0L326_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119340 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 3.3e-120
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 228
           CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 227

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BLAST of Csa3G119340 vs. TrEMBL
Match: A0A0D2U272_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G127400 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 107/229 (46.72%), Postives = 146/229 (63.76%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLK--NPTAHLPHRSPSRTSNSISKPPNFLSTP 60
           MD L++ SVSS L+ P+   ++ R    LK  N   HLP  SP R     +  P  +ST 
Sbjct: 1   MDPLSS-SVSSRLK-PTNFNSTPRQLHPLKPLNRPRHLPPPSPQRPLLFSTTKPTTISTS 60

Query: 61  QTLN-----PSIPFSTPRRSSSPL-LHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSK 120
            T       P  P  T    SS L +HR PA+GYAAALLD +QSTG++H V +DV + S+
Sbjct: 61  FTHKNLTALPIFPHPTSLLPSSSLHVHRTPATGYAAALLDTTQSTGSLHEVRRDVRKLSR 120

Query: 121 LLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSE 180
           LL+  +I  +LNDP +GD+EKG+ +KE+A KG F + +  L K+++EK+KL I++EV  E
Sbjct: 121 LLQNSQIQALLNDPFLGDQEKGKAMKELAKKGKFNKHLFNLLKVMVEKNKLGIVSEVLEE 180

Query: 181 FERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFI 222
           FERVYDEL GT+ V VSS K + E+ L  IA  VQ LSGA+KVKV++ +
Sbjct: 181 FERVYDELIGTKQVWVSSEKMIGEDMLFKIAMKVQNLSGAVKVKVKNLV 227

[Close]

BLAST of Csa3G119340 vs. TrEMBL
Match: W9RLH4_9ROSA (ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41
Identity = 102/231 (44.16%), Postives = 150/231 (64.94%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFL--HLKNPTAH-------LPHRSPSRTSNSISKP 60
           MD L+  S  S L+VP+   T+SR  L  H K   +        LP+++P+ T+ +   P
Sbjct: 1   MDPLS--SSVSTLKVPTLHSTTSRHELLTHFKTTPSKNLPYSSLLPNKTPTFTTQNPFTP 60

Query: 61  PNFLSTPQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFS 120
            +F ST  T + + P  +PR    P+ HR PA+GYAAALLD +Q+  ++ SV +DV R  
Sbjct: 61  SSFSSTSPTRSLTAPSPSPR---PPIHHRNPATGYAAALLDVAQANNSVDSVGRDVERLL 120

Query: 121 KLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSK-LSILTEVF 180
            L+R KR+  VL    VG++EKG++VK++A KG F R +V+L KML++K K + I+ +V 
Sbjct: 121 NLMRNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDKKKDVGIIRQVL 180

Query: 181 SEFERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFI 222
            EFERVYD++  T+VV+VSS+KK+EE  +  IAK VQ L+GA+KVKVR+ +
Sbjct: 181 EEFERVYDQMLRTQVVLVSSAKKIEENNMFWIAKRVQTLTGALKVKVRNLV 226

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BLAST of Csa3G119340 vs. TrEMBL
Match: M1A9Y1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007007 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-39
Identity = 106/235 (45.11%), Postives = 144/235 (61.28%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNP-------TAHLPHRSPSRTSNSIS---- 60
           MDTL+T SVSS L+V S     S DF H KNP       + H     P+  SN  +    
Sbjct: 1   MDTLST-SVSS-LKV-SNLRRYSADFHHFKNPYTTSSSSSPHFNFPKPTSISNKTNSFTH 60

Query: 61  -KPPNFLSTPQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVG 120
            K  NF    +T  P  PFS  + +     H R +SGYAAAL+D +    ++  + KDV 
Sbjct: 61  KKTTNFPFLSKTPPPKQPFSKHQTA-----HTRASSGYAAALIDIANCNNSLEKLDKDVR 120

Query: 121 RFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTE 180
           R S+ LR  ++  ++ DP VG++EKG +VKEI  KG F + +V + K+L+EK+KL I+ E
Sbjct: 121 RLSRWLRNDQLRVLMTDPFVGNQEKGYVVKEILSKGNFNKHLVGVVKLLVEKNKLEIVGE 180

Query: 181 VFSEFERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGA--IKVKVRSFI 222
           V  EFER+YD+LCGT+VV+VSS  KME+ E+ GIAK VQ LSGA  +KVKVR+ +
Sbjct: 181 VLMEFERIYDQLCGTQVVLVSSEVKMEKNEVFGIAKKVQELSGAERVKVKVRNLV 227

[Close]

BLAST of Csa3G119340 vs. TrEMBL
Match: B9SBC4_RICCO (ATP synthase delta chain, putative OS=Ricinus communis GN=RCOM_0715620 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.2e-39
Identity = 104/225 (46.22%), Postives = 148/225 (65.78%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTA--HLPHRSPSRTSNSISKPPNFLS-- 60
           MDTL+  SVS+ L++P+   +  R F H K P+A   LP    +   NSIS     +   
Sbjct: 1   MDTLSN-SVST-LKLPALH-SKPRQFYHFKTPSASQQLPPTHFTTKPNSISNRNTNIQIL 60

Query: 61  TPQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRG 120
           + ++L  S  F  P     P  H+ PA+GYAAALLD +Q   ++ +V KDV R SKLLR 
Sbjct: 61  SLKSLTNSPSFLKP----PPNTHQNPATGYAAALLDIAQFNNSLETVEKDVKRLSKLLRN 120

Query: 121 KRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERV 180
           ++I  +L +PLVGD+EKG ++KE+  KG F   +V+L  MLIE++K+ I+ EV  EF+R+
Sbjct: 121 EQIQCILINPLVGDKEKGLVLKEVGKKGKFNSILVRLLTMLIERNKIMIVNEVLVEFQRI 180

Query: 181 YDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFI 222
           +DEL GT+VV+VSS KKMEE+ L  IA++VQ+ SGA+KVKVR+ +
Sbjct: 181 FDELSGTKVVLVSSKKKMEEDALFRIAQSVQKFSGAVKVKVRNLV 218

[Close]

BLAST of Csa3G119340 vs. TAIR10
Match: AT4G09650.1 (AT4G09650.1 ATP synthase delta-subunit gene)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 41/144 (28.47%), Postives = 77/144 (53.47%), Query Frame = 1


Query: 83  ASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVLNDPLVGDEEKGRLVKEIAV 142
           AS YA AL D ++   T+     D+ +  ++    ++     +P +  E+K +++ +I  
Sbjct: 52  ASSYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVK 111

Query: 143 KGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGTEVVMVSSSKKMEEEELIGI 202
               +        +L++ ++++I+TE+  EFE VY++L  T++  V S  K+E  +L  I
Sbjct: 112 SSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQI 171

Query: 203 AKNVQRLSGAIKVKVRSFIHGGLM 227
           AK VQ+L+GA  V+V++ I   L+
Sbjct: 172 AKQVQKLTGAKNVRVKTVIDASLV 195

[Close]

BLAST of Csa3G119340 vs. TAIR10
Match: AT4G00895.1 (AT4G00895.1 ATPase, F1 complex, OSCP/delta subunit protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 66/206 (32.04%), Postives = 95/206 (46.12%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTL----------TSSRDFLHLKNPTAHLPHRSPSRTSNSISK 60
           + +L  PS+    + P R++          T+S    +L  PT+     SPS  S S ++
Sbjct: 8   VSSLNLPSLPPPPQPPLRSISSRFKSTVNATTSASSTNLSKPTSS----SPSSASYSQNR 67

Query: 61  PPNFLST-----PQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAK 120
            PNFL       PQT  PS   + P     P +H + ASG+AAAL+   QS   +    +
Sbjct: 68  NPNFLKAISFHLPQT-KPSRVVTPP----PPPVHDKAASGFAAALVSVCQSKNCLGRTQE 127

Query: 121 DVGRFSKLLRGKRIGRVLNDPLVGDEEKGR--LVKEIAVKGGFERQVVKLTKMLIEKSKL 180
           DV R  + L             VG+E+K    LV ++  +G F +    L KMLI + K 
Sbjct: 128 DVRRLMEFL-------------VGEEKKRNKVLVNDVVERGKFGKHFKGLVKMLIARGKS 187

Query: 181 SILTEVFSEFERVYDELCGTEVVMVS 190
            IL +V  EFER+ +EL   ++V VS
Sbjct: 188 GILVDVLMEFERICNELVSKKLVWVS 191

[Close]

BLAST of Csa3G119340 vs. NCBI nr
Match: gi|449433016|ref|XP_004134294.1| (PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 4.7e-120
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 228
           CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 227

[Close]

BLAST of Csa3G119340 vs. NCBI nr
Match: gi|659074899|ref|XP_008437855.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 415.6 bits (1067), Expect = 5.5e-113
Identity = 211/227 (92.95%), Postives = 218/227 (96.04%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60
           MDTLTT SVSS LRVPSRTL SSRDFLHLKNPTAHLPHRSP RTSNSISKPPNFLSTP+T
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120
           LNPSIPFSTPRRSSSPLLHRRPASGYAAAL+DASQSTGTIHSVAKDVGRFSKLLRGKRIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180
           RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEK  L ILTEVFSEF+R+YDEL
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFDRIYDEL 180

Query: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLMV 228
           CGTEVVMVSS+KKMEEEEL GIAKN QRLSGA+KVKVRSF+HGGLMV
Sbjct: 181 CGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLMV 227

[Close]

BLAST of Csa3G119340 vs. NCBI nr
Match: gi|720036813|ref|XP_010267478.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 103/232 (44.40%), Postives = 151/232 (65.09%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTA-----HLPHRSPSRTSNSISKPPNFL 60
           MDTL+T SVSS L+ P    T+ R+  H ++P       H  H S  R +++ +KP    
Sbjct: 1   MDTLST-SVSS-LKAPGLPTTAPRETFHFRSPHTPFLLPHYHHLSTHRPNSTFNKPSLPF 60

Query: 61  STPQTLNPSIPFSTPR--RSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKL 120
           ++    +P +P S P   RS SP++HR+ ASGYAAAL+D ++ +  + +V  DV RFS+L
Sbjct: 61  TSKSYKSPFLPSSQPSSLRSPSPVVHRKAASGYAAALMDRARCSNVLEAVEHDVRRFSRL 120

Query: 121 LRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEF 180
              + +  +LNDP V D+ KG  VK++  KG F++ +  L KM+IEK+K+ ++ EV  EF
Sbjct: 121 FHSEHLRAILNDPFVDDKTKGEEVKQVVEKGRFQKHLAVLLKMMIEKNKMGMVNEVLQEF 180

Query: 181 ERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGL 226
           +R+YDEL GT +V+VSS++KMEE++L GIAK VQ LSGA+K+KVR  I   L
Sbjct: 181 QRIYDELSGTRIVLVSSARKMEEDQLFGIAKRVQSLSGAMKIKVRHLIDESL 230

[Close]

BLAST of Csa3G119340 vs. NCBI nr
Match: gi|823208931|ref|XP_012437790.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii])

HSP 1 Score: 177.2 bits (448), Expect = 3.3e-41
Identity = 107/229 (46.72%), Postives = 146/229 (63.76%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLK--NPTAHLPHRSPSRTSNSISKPPNFLSTP 60
           MD L++ SVSS L+ P+   ++ R    LK  N   HLP  SP R     +  P  +ST 
Sbjct: 1   MDPLSS-SVSSRLK-PTNFNSTPRQLHPLKPLNRPRHLPPPSPQRPLLFSTTKPTTISTS 60

Query: 61  QTLN-----PSIPFSTPRRSSSPL-LHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSK 120
            T       P  P  T    SS L +HR PA+GYAAALLD +QSTG++H V +DV + S+
Sbjct: 61  FTHKNLTALPIFPHPTSLLPSSSLHVHRTPATGYAAALLDTTQSTGSLHEVRRDVRKLSR 120

Query: 121 LLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSE 180
           LL+  +I  +LNDP +GD+EKG+ +KE+A KG F + +  L K+++EK+KL I++EV  E
Sbjct: 121 LLQNSQIQALLNDPFLGDQEKGKAMKELAKKGKFNKHLFNLLKVMVEKNKLGIVSEVLEE 180

Query: 181 FERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFI 222
           FERVYDEL GT+ V VSS K + E+ L  IA  VQ LSGA+KVKV++ +
Sbjct: 181 FERVYDELIGTKQVWVSSEKMIGEDMLFKIAMKVQNLSGAVKVKVKNLV 227

[Close]

BLAST of Csa3G119340 vs. NCBI nr
Match: gi|703114577|ref|XP_010100695.1| (ATP synthase delta chain [Morus notabilis])

HSP 1 Score: 176.0 bits (445), Expect = 7.4e-41
Identity = 102/231 (44.16%), Postives = 150/231 (64.94%), Query Frame = 1


Query: 1   MDTLTTPSVSSALRVPSRTLTSSRDFL--HLKNPTAH-------LPHRSPSRTSNSISKP 60
           MD L+  S  S L+VP+   T+SR  L  H K   +        LP+++P+ T+ +   P
Sbjct: 1   MDPLS--SSVSTLKVPTLHSTTSRHELLTHFKTTPSKNLPYSSLLPNKTPTFTTQNPFTP 60

Query: 61  PNFLSTPQTLNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFS 120
            +F ST  T + + P  +PR    P+ HR PA+GYAAALLD +Q+  ++ SV +DV R  
Sbjct: 61  SSFSSTSPTRSLTAPSPSPR---PPIHHRNPATGYAAALLDVAQANNSVDSVGRDVERLL 120

Query: 121 KLLRGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSK-LSILTEVF 180
            L+R KR+  VL    VG++EKG++VK++A KG F R +V+L KML++K K + I+ +V 
Sbjct: 121 NLMRNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDKKKDVGIIRQVL 180

Query: 181 SEFERVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFI 222
            EFERVYD++  T+VV+VSS+KK+EE  +  IAK VQ L+GA+KVKVR+ +
Sbjct: 181 EEFERVYDQMLRTQVVLVSSAKKIEENNMFWIAKRVQTLTGALKVKVRNLV 226

The following BLAST results are available for this feature:

BLAST of Csa3G119340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPD_PEA	1.0e-21	30.14	ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1	[more]
ATPD_TOBAC	1.8e-18	32.64	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1	[more]
ATPD_SORBI	1.1e-17	27.96	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1	[more]
ATPD_SPIOL	5.7e-17	28.13	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2	[more]
ATPD_ARATH	2.0e-14	28.47	ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 S...	[more]

BLAST of Csa3G119340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L326_CUCSA	3.3e-120	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119340 PE=4 SV=1	[more]
A0A0D2U272_GOSRA	2.3e-41	46.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G127400 PE=4 SV=1	[more]
W9RLH4_9ROSA	5.1e-41	44.16	ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1	[more]
M1A9Y1_SOLTU	4.8e-39	45.11	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007007 PE=4 SV=1	[more]
B9SBC4_RICCO	8.2e-39	46.22	ATP synthase delta chain, putative OS=Ricinus communis GN=RCOM_0715620 PE=4 SV=1	[more]

BLAST of Csa3G119340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09650.1	1.1e-15	28.47	ATP synthase delta-subunit gene	[more]
AT4G00895.1	1.6e-14	32.04	ATPase, F1 complex, OSCP/delta subunit protein	[more]

BLAST of Csa3G119340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433016\|ref\|XP_004134294.1\|	4.7e-120	100.00	PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus]	[more]
gi\|659074899\|ref\|XP_008437855.1\|	5.5e-113	92.95	PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo]	[more]
gi\|720036813\|ref\|XP_010267478.1\|	4.9e-45	44.40	PREDICTED: ATP synthase delta chain, chloroplastic [Nelumbo nucifera]	[more]
gi\|823208931\|ref\|XP_012437790.1\|	3.3e-41	46.72	PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii]	[more]
gi\|703114577\|ref\|XP_010100695.1\|	7.4e-41	44.16	ATP synthase delta chain [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000711	ATPase_OSCP/dsu
IPR026015	ATP_synth_OSCP/delta_N_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0045259	proton-transporting ATP synthase complex
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU090281	cucumber EST collection version 3.0	transcribed_cluster
CU099097	cucumber EST collection version 3.0	transcribed_cluster
CU107067	cucumber EST collection version 3.0	transcribed_cluster
CU118189	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G119340.1	Csa3G119340.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU090281	CU090281	transcribed_cluster
CU118189	CU118189	transcribed_cluster
CU107067	CU107067	transcribed_cluster
CU099097	CU099097	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 57..221 score: 8.1
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 84..227 score: 8.0
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	GENE3D	G3DSA:1.10.520.20		coord: 84..179 score: 2.8
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	unknown	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 83..180 score: 5.49
None	No IPR available	PANTHER	PTHR11910:SF8	SUBFAMILY NOT NAMED	coord: 57..221 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G119340	Cla021131	Watermelon (97103) v1	cuwmB233
Csa3G119340	MELO3C006001	Melon (DHL92) v3.5.1	cumeB236
Csa3G119340	ClCG05G000620	Watermelon (Charleston Gray)	cuwcgB222
Csa3G119340	Lsi05G021520	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G119340	MELO3C006001.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G119340	Cla97C05G080690	Watermelon (97103) v2	cuwmbB204
Csa3G119340	Bhi01G000379	Wax gourd	cuwgoB284
Csa3G119340	CSPI03G07720	Wild cucumber (PI 183967)	cpicuB120
Csa3G119340	Cucsa.259470	Cucumber (Gy14) v1	cgycuB366
Csa3G119340	CsGy3G007850	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G119340	Silver-seed gourd	carcuB0132
Csa3G119340	Silver-seed gourd	carcuB1007
Csa3G119340	Watermelon (97103) v2	cuwmbB173
Csa3G119340	Wax gourd	cuwgoB261
Csa3G119340	Cucumber (Chinese Long) v2	cucuB095
Csa3G119340	Cucumber (Gy14) v1	cgycuB307
Csa3G119340	Cucurbita maxima (Rimu)	cmacuB253
Csa3G119340	Cucurbita maxima (Rimu)	cmacuB285
Csa3G119340	Cucurbita maxima (Rimu)	cmacuB818
Csa3G119340	Cucurbita maxima (Rimu)	cmacuB830
Csa3G119340	Cucurbita moschata (Rifu)	cmocuB239
Csa3G119340	Cucurbita moschata (Rifu)	cmocuB271
Csa3G119340	Cucurbita moschata (Rifu)	cmocuB593
Csa3G119340	Cucurbita moschata (Rifu)	cmocuB806
Csa3G119340	Melon (DHL92) v3.5.1	cumeB175
Csa3G119340	Watermelon (Charleston Gray)	cuwcgB204
Csa3G119340	Watermelon (97103) v1	cuwmB258
Csa3G119340	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G119340	Cucurbita pepo (Zucchini)	cpecuB720
Csa3G119340	Cucurbita pepo (Zucchini)	cpecuB862
Csa3G119340	Bottle gourd (USVL1VR-Ls)	culsiB151
Csa3G119340	Melon (DHL92) v3.6.1	cumedB157