CsGy3G000080 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G000080
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 116064 .. 116402 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

mRNA sequence

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

Coding sequence (CDS)

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

Protein sequence

MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF

Homology

[Close]

BLAST of CsGy3G000080 vs. NCBI nr
Match: KGN55589.1 (hypothetical protein Csa_3G000130 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 6.8e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60

Query: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 113
           KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF
Sbjct: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 112

[Close]

BLAST of CsGy3G000080 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MDPITYERI----TRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKS 60
           M+PI+YERI    +RR+ +S RGFRL SRR SVS+LR+KF  LLRILN+WRRS   IKK 
Sbjct: 78  MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLLRILNKWRRS---IKKM 137

Query: 61  GTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFS 102
             S    +       +LRSFRRSNSFYAEA+ADCLDFIKT +S S
Sbjct: 138 RRSKAEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

[Close]

BLAST of CsGy3G000080 vs. NCBI nr
Match: PRQ47164.1 (hypothetical protein RchiOBHm_Chr2g0096741 [Rosa chinensis])

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           M  ++Y R+     R+ RGFRL  RR SVS+LR++F    + L+RWR S +  + S TSS
Sbjct: 1   MGHMSYNRV--GNVRANRGFRLNPRRFSVSRLRTRFLCFFKFLSRWRCSCMR-RASTTSS 60

Query: 61  KGSSN-------------SAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTS 99
            GSS+             S     +LRS+ RSNSFYAEAIADCL+FIK +S
Sbjct: 61  NGSSSSRGLVRKKLQNKGSRVDCGRLRSYGRSNSFYAEAIADCLEFIKRSS 108

[Close]

BLAST of CsGy3G000080 vs. NCBI nr
Match: KZM98516.1 (hypothetical protein DCAR_014122 [Daucus carota subsp. sativus] >KZM98517.1 hypothetical protein DCAR_014121 [Daucus carota subsp. sativus])

HSP 1 Score: 69.3 bits (168), Expect = 9.3e-09
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 4   ITYERITRRQRRS----CRGFRLTSRRLSVSKLRSKFGWLLRILN-RWR------RSIVE 63
           + Y R+ R  RRS    CRGFRL +RR SV +LR+KF +L +IL+ RWR      R+I  
Sbjct: 5   LKYNRV-RDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICH 64

Query: 64  IKKSGTSSKGSSNSAAQAA--KLRSFRRSNSFYAEAIADCLDFIKTTS 99
             +   S +  S +A      +LRSF RSNSFY+EAIADCL+FIK +S
Sbjct: 65  SHRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSS 111

[Close]

BLAST of CsGy3G000080 vs. NCBI nr
Match: XP_007156267.1 (hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris] >ESW28261.1 hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVE-------- 60
           M  ++Y R+       CRGFRL  R+L V +LR +F + LR+    + S  E        
Sbjct: 1   MAHMSYSRVCSGNASRCRGFRLNPRKLYVLRLRKRFNFFLRVFQSCKLSYGEAIQVLKKV 60

Query: 61  -IKKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
             +K G     ++N   +  K+ S  RSNSFYAEAIADCL+FIK TS+ S   S  P
Sbjct: 61  FCRKGGFKRNNTNNLVREDCKMGSCGRSNSFYAEAIADCLEFIKRTSTSSMDQSQDP 117

[Close]

BLAST of CsGy3G000080 vs. TrEMBL
Match: tr|A0A0A0L3I7|A0A0A0L3I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.5e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60

Query: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 113
           KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF
Sbjct: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 112

[Close]

BLAST of CsGy3G000080 vs. TrEMBL
Match: tr|A0A2P6RL53|A0A2P6RL53_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0096741 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           M  ++Y R+     R+ RGFRL  RR SVS+LR++F    + L+RWR S +  + S TSS
Sbjct: 1   MGHMSYNRV--GNVRANRGFRLNPRRFSVSRLRTRFLCFFKFLSRWRCSCMR-RASTTSS 60

Query: 61  KGSSN-------------SAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTS 99
            GSS+             S     +LRS+ RSNSFYAEAIADCL+FIK +S
Sbjct: 61  NGSSSSRGLVRKKLQNKGSRVDCGRLRSYGRSNSFYAEAIADCLEFIKRSS 108

[Close]

BLAST of CsGy3G000080 vs. TrEMBL
Match: tr|A0A165XTS4|A0A165XTS4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.1e-09
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 4   ITYERITRRQRRS----CRGFRLTSRRLSVSKLRSKFGWLLRILN-RWR------RSIVE 63
           + Y R+ R  RRS    CRGFRL +RR SV +LR+KF +L +IL+ RWR      R+I  
Sbjct: 5   LKYNRV-RDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICH 64

Query: 64  IKKSGTSSKGSSNSAAQAA--KLRSFRRSNSFYAEAIADCLDFIKTTS 99
             +   S +  S +A      +LRSF RSNSFY+EAIADCL+FIK +S
Sbjct: 65  SHRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSS 111

[Close]

BLAST of CsGy3G000080 vs. TrEMBL
Match: tr|V7CH86|V7CH86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G272000g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVE-------- 60
           M  ++Y R+       CRGFRL  R+L V +LR +F + LR+    + S  E        
Sbjct: 1   MAHMSYSRVCSGNASRCRGFRLNPRKLYVLRLRKRFNFFLRVFQSCKLSYGEAIQVLKKV 60

Query: 61  -IKKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
             +K G     ++N   +  K+ S  RSNSFYAEAIADCL+FIK TS+ S   S  P
Sbjct: 61  FCRKGGFKRNNTNNLVREDCKMGSCGRSNSFYAEAIADCLEFIKRTSTSSMDQSQDP 117

[Close]

BLAST of CsGy3G000080 vs. TrEMBL
Match: tr|A0A1Q3CYT7|A0A1Q3CYT7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28853 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKS---- 60
           M  ++Y R+ RR     +GFRL SRR SV +LR++F +L R+L  WR S  +  KS    
Sbjct: 1   MAHVSYTRVGRRTCHETKGFRLNSRRFSVQRLRARFLYLFRLLRTWRSSCGQALKSLKRG 60

Query: 61  ---------------------GTSSKGSSN-SAAQAAKLRSFRRSNSFYAEAIADCLDFI 99
                                      ++N   A+  +LRSF RSNSFY++AIADCL+FI
Sbjct: 61  FCRNYXXXXXXXXXXXXXXXISVMDVPTNNMGRAECDRLRSFGRSNSFYSDAIADCLEFI 120

The following BLAST results are available for this feature:

BLAST of CsGy3G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55589.1	6.8e-52	100.00	hypothetical protein Csa_3G000130 [Cucumis sativus]	[more]
XP_022158286.1	1.3e-18	60.95	uncharacterized protein LOC111024807 [Momordica charantia]	[more]
PRQ47164.1	4.9e-10	45.95	hypothetical protein RchiOBHm_Chr2g0096741 [Rosa chinensis]	[more]
KZM98516.1	9.3e-09	48.15	hypothetical protein DCAR_014122 [Daucus carota subsp. sativus] >KZM98517.1 hypo...	[more]
XP_007156267.1	1.6e-08	39.32	hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris] >ESW28261.1 hypothet...	[more]

BLAST of CsGy3G000080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G000080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G000080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3I7\|A0A0A0L3I7_CUCSA	4.5e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1	[more]
tr\|A0A2P6RL53\|A0A2P6RL53_ROSCH	3.3e-10	45.95	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0096741 PE=4...	[more]
tr\|A0A165XTS4\|A0A165XTS4_DAUCA	6.1e-09	48.15	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 ...	[more]
tr\|V7CH86\|V7CH86_PHAVU	1.0e-08	39.32	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G272000g PE=4 ...	[more]
tr\|A0A1Q3CYT7\|A0A1Q3CYT7_CEPFO	2.3e-08	37.90	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28853 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G000080.1	CsGy3G000080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34996	FAMILY NOT NAMED	coord: 1..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G000080	Cla008960	Watermelon (97103) v1	cgybwmB188
CsGy3G000080	Csa3G000130	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G000080	MELO3C013706	Melon (DHL92) v3.5.1	cgybmeB209
CsGy3G000080	ClCG10G000110	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G000080	CSPI03G00120	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G000080	CmoCh06G001610	Cucurbita moschata (Rifu)	cgybcmoB411
CsGy3G000080	Lsi07G010360	Bottle gourd (USVL1VR-Ls)	cgyblsiB217
CsGy3G000080	Cp4.1LG08g12780	Cucurbita pepo (Zucchini)	cgybcpeB446
CsGy3G000080	MELO3C013706.2	Melon (DHL92) v3.6.1	cgybmedB202
CsGy3G000080	CsaV3_3G000130	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G000080	CsaV3_UNG155170	Cucumber (Chinese Long) v3	cgybcucB126
CsGy3G000080	Cla97C10G184640	Watermelon (97103) v2	cgybwmbB174
CsGy3G000080	Bhi11G000271	Wax gourd	cgybwgoB235
CsGy3G000080	Carg01166	Silver-seed gourd	carcgybB0168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G000080	Cucurbita maxima (Rimu)	cgybcmaB339
CsGy3G000080	Cucurbita maxima (Rimu)	cgybcmaB440
CsGy3G000080	Cucurbita moschata (Rifu)	cgybcmoB310
CsGy3G000080	Cucurbita pepo (Zucchini)	cgybcpeB325
CsGy3G000080	Silver-seed gourd	carcgybB0438