Csa3G000130 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G000130
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 114087 .. 114425 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

mRNA sequence

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

Coding sequence (CDS)

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

Protein sequence

MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF*

Homology

[Close]

BLAST of Csa3G000130 vs. TrEMBL
Match: A0A0A0L3I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60

Query: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 113
           KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF
Sbjct: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 112

[Close]

BLAST of Csa3G000130 vs. TrEMBL
Match: V7CH86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G272000g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI------- 60
           M  ++Y R+       CRGFRL  R+L V +LR +F + LR+    + S  E        
Sbjct: 1   MAHMSYSRVCSGNASRCRGFRLNPRKLYVLRLRKRFNFFLRVFQSCKLSYGEAIQVLKKV 60

Query: 61  --KKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
             +K G     ++N   +  K+ S  RSNSFYAEAIADCL+FIK TS+ S   S  P
Sbjct: 61  FCRKGGFKRNNTNNLVREDCKMGSCGRSNSFYAEAIADCLEFIKRTSTSSMDQSQDP 117

[Close]

BLAST of Csa3G000130 vs. TrEMBL
Match: A0A165XTS4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-12
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 4   ITYERITRRQRRS----CRGFRLTSRRLSVSKLRSKFGWLLRILN-RWR------RSIVE 63
           + Y R+ R  RRS    CRGFRL +RR SV +LR+KF +L +IL+ RWR      R+I  
Sbjct: 5   LKYNRV-RDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICH 64

Query: 64  IKKSGTSSKGSSNSAAQAA--KLRSFRRSNSFYAEAIADCLDFIKTTS 99
             +   S +  S +A      +LRSF RSNSFY+EAIADCL+FIK +S
Sbjct: 65  SHRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSS 111

[Close]

BLAST of Csa3G000130 vs. TrEMBL
Match: A0A151QN04_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047857 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI-----KK 60
           M  ++Y R++  +   CRGFRL  R+L V +LR +F + LR+ + W+ S  E      K 
Sbjct: 1   MGHMSYNRVSSGKVSRCRGFRLNPRKLYVLRLRKRFNFFLRLFDNWKLSYGEAIQLLKKM 60

Query: 61  SGTSS---KGSSNSAAQAAKL--------RSFRRSNSFYAEAIADCLDFIKTTSSFSTPP 106
            G  S   + +S S  +  K+        RS  RSNSFYAEAIADCL+FIK TS  S   
Sbjct: 61  VGIKSGFRRNNSRSLVREEKIKGQDDCRMRSCGRSNSFYAEAIADCLEFIKRTSISSMDQ 120

[Close]

BLAST of Csa3G000130 vs. TrEMBL
Match: B9SRA4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0612990 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-11
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 5   TYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRS----IVEIKKSGTS 64
           +Y +I RR      RGFRL  +R SV +LR++F +L ++L+RW+ S    +  +K+S + 
Sbjct: 8   SYSKIGRRYHGYGGRGFRLNCKRFSVQRLRARFVYLFKLLSRWKSSYGHAVQSLKRSMSR 67

Query: 65  SKGSSNSAAQA----------AKLRSFRRSNSFYAEAIADCLDFIKTTS 99
           S G   + +             ++R+F RSNSFY+EAIADCL+FIK +S
Sbjct: 68  SSGIKRNTSSRRSLVVEVSSDCRMRTFGRSNSFYSEAIADCLEFIKRSS 116

[Close]

BLAST of Csa3G000130 vs. NCBI nr
Match: gi|700200456|gb|KGN55589.1| (hypothetical protein Csa_3G000130 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60

Query: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 113
           KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF
Sbjct: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 112

[Close]

BLAST of Csa3G000130 vs. NCBI nr
Match: gi|593786453|ref|XP_007156267.1| (hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris])

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI------- 60
           M  ++Y R+       CRGFRL  R+L V +LR +F + LR+    + S  E        
Sbjct: 1   MAHMSYSRVCSGNASRCRGFRLNPRKLYVLRLRKRFNFFLRVFQSCKLSYGEAIQVLKKV 60

Query: 61  --KKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
             +K G     ++N   +  K+ S  RSNSFYAEAIADCL+FIK TS+ S   S  P
Sbjct: 61  FCRKGGFKRNNTNNLVREDCKMGSCGRSNSFYAEAIADCLEFIKRTSTSSMDQSQDP 117

[Close]

BLAST of Csa3G000130 vs. NCBI nr
Match: gi|1021040735|gb|KZM98516.1| (hypothetical protein DCAR_014122 [Daucus carota subsp. sativus])

HSP 1 Score: 78.6 bits (192), Expect = 7.9e-12
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 4   ITYERITRRQRRS----CRGFRLTSRRLSVSKLRSKFGWLLRILN-RWR------RSIVE 63
           + Y R+ R  RRS    CRGFRL +RR SV +LR+KF +L +IL+ RWR      R+I  
Sbjct: 5   LKYNRV-RDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICH 64

Query: 64  IKKSGTSSKGSSNSAAQAA--KLRSFRRSNSFYAEAIADCLDFIKTTS 99
             +   S +  S +A      +LRSF RSNSFY+EAIADCL+FIK +S
Sbjct: 65  SHRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSS 111

[Close]

BLAST of Csa3G000130 vs. NCBI nr
Match: gi|1012318154|gb|KYP31687.1| (hypothetical protein KK1_047857 [Cajanus cajan])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI-----KK 60
           M  ++Y R++  +   CRGFRL  R+L V +LR +F + LR+ + W+ S  E      K 
Sbjct: 1   MGHMSYNRVSSGKVSRCRGFRLNPRKLYVLRLRKRFNFFLRLFDNWKLSYGEAIQLLKKM 60

Query: 61  SGTSS---KGSSNSAAQAAKL--------RSFRRSNSFYAEAIADCLDFIKTTSSFSTPP 106
            G  S   + +S S  +  K+        RS  RSNSFYAEAIADCL+FIK TS  S   
Sbjct: 61  VGIKSGFRRNNSRSLVREEKIKGQDDCRMRSCGRSNSFYAEAIADCLEFIKRTSISSMDQ 120

[Close]

BLAST of Csa3G000130 vs. NCBI nr
Match: gi|223532025|gb|EEF33835.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 5   TYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRS----IVEIKKSGTS 64
           +Y +I RR      RGFRL  +R SV +LR++F +L ++L+RW+ S    +  +K+S + 
Sbjct: 8   SYSKIGRRYHGYGGRGFRLNCKRFSVQRLRARFVYLFKLLSRWKSSYGHAVQSLKRSMSR 67

Query: 65  SKGSSNSAAQA----------AKLRSFRRSNSFYAEAIADCLDFIKTTS 99
           S G   + +             ++R+F RSNSFY+EAIADCL+FIK +S
Sbjct: 68  SSGIKRNTSSRRSLVVEVSSDCRMRTFGRSNSFYSEAIADCLEFIKRSS 116

The following BLAST results are available for this feature:

BLAST of Csa3G000130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I7_CUCSA	1.4e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000130 PE=4 SV=1	[more]
V7CH86_PHAVU	4.2e-12	39.32	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G272000g PE=4 SV=1	[more]
A0A165XTS4_DAUCA	5.5e-12	48.15	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014121 PE=4 SV=1	[more]
A0A151QN04_CAJCA	2.7e-11	40.50	Uncharacterized protein OS=Cajanus cajan GN=KK1_047857 PE=4 SV=1	[more]
B9SRA4_RICCO	3.6e-11	39.45	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0612990 PE=4 SV=1	[more]

BLAST of Csa3G000130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200456\|gb\|KGN55589.1\|	2.0e-55	100.00	hypothetical protein Csa_3G000130 [Cucumis sativus]	[more]
gi\|593786453\|ref\|XP_007156267.1\|	6.1e-12	39.32	hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris]	[more]
gi\|1021040735\|gb\|KZM98516.1\|	7.9e-12	48.15	hypothetical protein DCAR_014122 [Daucus carota subsp. sativus]	[more]
gi\|1012318154\|gb\|KYP31687.1\|	3.9e-11	40.50	hypothetical protein KK1_047857 [Cajanus cajan]	[more]
gi\|223532025\|gb\|EEF33835.1\|	5.2e-11	39.45	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G000130.1	Csa3G000130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34996	FAMILY NOT NAMED	coord: 1..98 score: 8.2
None	No IPR available	PANTHER	PTHR34996:SF3	SUBFAMILY NOT NAMED	coord: 1..98 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G000130	Cla008960	Watermelon (97103) v1	cuwmB200
Csa3G000130	MELO3C013706	Melon (DHL92) v3.5.1	cumeB243
Csa3G000130	ClCG10G000110	Watermelon (Charleston Gray)	cuwcgB189
Csa3G000130	Lsi07G010360	Bottle gourd (USVL1VR-Ls)	culsiB228
Csa3G000130	MELO3C013706.2	Melon (DHL92) v3.6.1	cumedB224
Csa3G000130	Cla97C10G184640	Watermelon (97103) v2	cuwmbB181
Csa3G000130	Bhi11G000271	Wax gourd	cuwgoB245
Csa3G000130	CSPI03G00120	Wild cucumber (PI 183967)	cpicuB120
Csa3G000130	CmoCh06G001610	Cucurbita moschata (Rifu)	cmocuB817
Csa3G000130	Cp4.1LG08g12780	Cucurbita pepo (Zucchini)	cpecuB851
Csa3G000130	CsGy3G000080	Cucumber (Gy14) v2	cgybcuB109
Csa3G000130	Carg01166	Silver-seed gourd	carcuB0173

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G000130	Cucumber (Gy14) v1	cgycuB458
Csa3G000130	Cucurbita maxima (Rimu)	cmacuB326
Csa3G000130	Cucurbita maxima (Rimu)	cmacuB827
Csa3G000130	Cucurbita moschata (Rifu)	cmocuB316
Csa3G000130	Cucurbita pepo (Zucchini)	cpecuB212
Csa3G000130	Cucurbita pepo (Zucchini)	cpecuB555
Csa3G000130	Silver-seed gourd	carcuB0462