Cla97C10G184640 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G184640
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr10 : 169387 .. 169737 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

mRNA sequence

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

Coding sequence (CDS)

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

Protein sequence

MDPHPITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTSTSL

Homology

[Close]

BLAST of Cla97C10G184640 vs. NCBI nr
Match: KGN55589.1 (hypothetical protein Csa_3G000130 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERI RR+RR SCRGFRL+SRRLSV KLR+K GW+L RILN WRRSIVEIKK G S 
Sbjct: 3   PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTS 105
             SS++AAQ     +L SFRRSNSFYAEAIADCLDFIKT+
Sbjct: 63  KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTT 97

[Close]

BLAST of Cla97C10G184640 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 9.6e-17
Identity = 65/103 (63.11%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 5   PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGG 64
           PI+YERI     RRR  S RGFRL+SRR SV +LRAK    L RILN WRRS   IKK  
Sbjct: 80  PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKF-MCLLRILNKWRRS---IKKMR 139

Query: 65  RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTS 105
           RSK   +  A  P C  RL SFRRSNSFYAEA+ADCLDFIKT+
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTN 175

[Close]

BLAST of Cla97C10G184640 vs. NCBI nr
Match: KZM98516.1 (hypothetical protein DCAR_014122 [Daucus carota subsp. sativus] >KZM98517.1 hypothetical protein DCAR_014121 [Daucus carota subsp. sativus])

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 6   ITYERIRRRRR--RGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWR------RSIVEI 65
           + Y R+R  RR   G CRGFRL++RR SV++LRAK  ++ + +   WR      R+I   
Sbjct: 5   LKYNRVRDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICHS 64

Query: 66  KKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTS 105
            +   S+    S  A PR + RL SF RSNSFY+EAIADCL+FIK S
Sbjct: 65  HRKKESRE-FVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRS 110

[Close]

BLAST of Cla97C10G184640 vs. NCBI nr
Match: PHU26627.1 (hypothetical protein BC332_04959 [Capsicum chinense])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKK------ 65
           ++Y R+ RR   G+ RGF+L+SRR SV +LRAK  ++ R    SWR S    ++      
Sbjct: 4   MSYNRVGRRSCCGTTRGFKLNSRRFSVQRLRAKFMYLYRLFCRSWRSSYKYTRRLLKFSD 63

Query: 66  ----------GGRSKGCSSSAAAQ-----PRCECRLSSFRRSNSFYAEAIADCLDFIK 103
                     GG  K    S  A         E RL S+ RSNSFYAEAIADCLDFIK
Sbjct: 64  KKVSSHDQSYGGNCKKNLVSEYADCGMYGNNYEYRLKSYGRSNSFYAEAIADCLDFIK 121

[Close]

BLAST of Cla97C10G184640 vs. NCBI nr
Match: PLY82787.1 (hypothetical protein LSAT_2X74220 [Lactuca sativa])

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSKG 65
           ++Y R+RRR      +GFRL+S+R SV +LRAK     R ++ +WR S    +    +  
Sbjct: 4   LSYTRVRRRSY--GTKGFRLNSKRFSVQRLRAKFFNFFRILMRTWRSSSYSKR---TTMS 63

Query: 66  CSSSAAAQPRCE------------CRLSSFRRSNSFYAEAIADCLDFIKTS 105
           CS+ +    R +            CRL SF RSNSFY+EAI DCL+FIK S
Sbjct: 64  CSNLSYGSSRRDFVAKENASRVDVCRLKSFTRSNSFYSEAIEDCLEFIKRS 109

[Close]

BLAST of Cla97C10G184640 vs. TrEMBL
Match: tr|A0A0A0L3I7|A0A0A0L3I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.8e-27
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERI RR+RR SCRGFRL+SRRLSV KLR+K GW+L RILN WRRSIVEIKK G S 
Sbjct: 3   PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTS 105
             SS++AAQ     +L SFRRSNSFYAEAIADCLDFIKT+
Sbjct: 63  KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTT 97

[Close]

BLAST of Cla97C10G184640 vs. TrEMBL
Match: tr|A0A165XTS4|A0A165XTS4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 6   ITYERIRRRRR--RGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWR------RSIVEI 65
           + Y R+R  RR   G CRGFRL++RR SV++LRAK  ++ + +   WR      R+I   
Sbjct: 5   LKYNRVRDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICHS 64

Query: 66  KKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTS 105
            +   S+    S  A PR + RL SF RSNSFY+EAIADCL+FIK S
Sbjct: 65  HRKKESRE-FVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRS 110

[Close]

BLAST of Cla97C10G184640 vs. TrEMBL
Match: tr|A0A2G3D6M2|A0A2G3D6M2_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-09
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKK------ 65
           ++Y R+ RR   G+ RGF+L+SRR SV +LRAK  ++ R    SWR S    ++      
Sbjct: 4   MSYNRVGRRSCCGTTRGFKLNSRRFSVQRLRAKFMYLYRLFCRSWRSSYKYTRRLLKFSD 63

Query: 66  ----------GGRSKGCSSSAAAQ-----PRCECRLSSFRRSNSFYAEAIADCLDFIK 103
                     GG  K    S  A         E RL S+ RSNSFYAEAIADCLDFIK
Sbjct: 64  KKVSSHDQSYGGNCKKNLVSEYADCGMYGNNYEYRLKSYGRSNSFYAEAIADCLDFIK 121

[Close]

BLAST of Cla97C10G184640 vs. TrEMBL
Match: tr|M1B2B8|M1B2B8_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 53/125 (42.40%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRS----IVEIKKG- 65
           ++Y+R+  RR  G  RGF+L+SRR SV +LRAK  ++ R    SWR S    I  IKK  
Sbjct: 4   MSYKRV-GRRCCGITRGFKLNSRRFSVQRLRAKFLYLYRLFSRSWRSSYRHAIRLIKKNF 63

Query: 66  -----------GRSKGCSSSAAAQ------------PRCECRLSSFRRSNSFYAEAIADC 103
                      GRS  C+ +  ++              C+ RL S+ RSNSFYAEAIADC
Sbjct: 64  NDTKDSRDQFYGRS--CNKNLVSEQADYAMYGNYNKSNCDYRLKSYGRSNSFYAEAIADC 123

[Close]

BLAST of Cla97C10G184640 vs. TrEMBL
Match: tr|A0A2J6L657|A0A2J6L657_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X74220 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSKG 65
           ++Y R+RRR      +GFRL+S+R SV +LRAK     R ++ +WR S    +    +  
Sbjct: 4   LSYTRVRRRSY--GTKGFRLNSKRFSVQRLRAKFFNFFRILMRTWRSSSYSKR---TTMS 63

Query: 66  CSSSAAAQPRCE------------CRLSSFRRSNSFYAEAIADCLDFIKTS 105
           CS+ +    R +            CRL SF RSNSFY+EAI DCL+FIK S
Sbjct: 64  CSNLSYGSSRRDFVAKENASRVDVCRLKSFTRSNSFYSEAIEDCLEFIKRS 109

The following BLAST results are available for this feature:

BLAST of Cla97C10G184640 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55589.1	1.0e-26	75.00	hypothetical protein Csa_3G000130 [Cucumis sativus]	[more]
XP_022158286.1	9.6e-17	63.11	uncharacterized protein LOC111024807 [Momordica charantia]	[more]
KZM98516.1	3.5e-11	46.73	hypothetical protein DCAR_014122 [Daucus carota subsp. sativus] >KZM98517.1 hypo...	[more]
PHU26627.1	1.3e-08	42.37	hypothetical protein BC332_04959 [Capsicum chinense]	[more]
PLY82787.1	6.2e-08	40.54	hypothetical protein LSAT_2X74220 [Lactuca sativa]	[more]

BLAST of Cla97C10G184640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3I7\|A0A0A0L3I7_CUCSA	6.8e-27	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1	[more]
tr\|A0A165XTS4\|A0A165XTS4_DAUCA	2.3e-11	46.73	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 ...	[more]
tr\|A0A2G3D6M2\|A0A2G3D6M2_CAPCH	8.3e-09	42.37	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1	[more]
tr\|M1B2B8\|M1B2B8_SOLTU	3.2e-08	42.40	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|A0A2J6L657\|A0A2J6L657_LACSA	4.1e-08	40.54	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X74220 PE=4 SV=1	[more]

BLAST of Cla97C10G184640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G184640 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G184640.1	Cla97C10G184640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34996	FAMILY NOT NAMED	coord: 6..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G184640	Cla008960	Watermelon (97103) v1	wmwmbB056
Cla97C10G184640	Csa3G000130	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G184640	MELO3C013706	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G184640	ClCG10G000110	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G184640	CSPI03G00120	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G184640	CmoCh06G001610	Cucurbita moschata (Rifu)	cmowmbB820
Cla97C10G184640	Lsi07G010360	Bottle gourd (USVL1VR-Ls)	lsiwmbB395
Cla97C10G184640	CsGy3G000080	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G184640	MELO3C013706.2	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G184640	Carg01166	Silver-seed gourd	carwmbB0160
Cla97C10G184640	CsaV3_UNG155170	Cucumber (Chinese Long) v3	cucwmbB265
Cla97C10G184640	CsaV3_3G000130	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G184640	Bhi11G000271	Wax gourd	wgowmbB021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G184640	Silver-seed gourd	carwmbB0453
Cla97C10G184640	Cucumber (Gy14) v1	cgywmbB562
Cla97C10G184640	Cucurbita maxima (Rimu)	cmawmbB337
Cla97C10G184640	Cucurbita maxima (Rimu)	cmawmbB446
Cla97C10G184640	Cucurbita maxima (Rimu)	cmawmbB846
Cla97C10G184640	Cucurbita moschata (Rifu)	cmowmbB320
Cla97C10G184640	Cucurbita moschata (Rifu)	cmowmbB427