CSPI03G00120 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G00120
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 130868 .. 131395 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGAAGTTGGGTTAAACTTTTCAAAGCATTTCTTTTCAGACGAGACAGACAACCGGCGGAAGCCACCAAAAAAGAAGATTATATTCCGGATCGATTTTTCAATATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAATTTTCTAGCTTTTTTTCTTCTTTTCTTTATCGCATCCCATATGGTATATTATATTATTACTGGCGATGGTTTAATCCTTTCCTAC

mRNA sequence

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

Coding sequence (CDS)

ATGGACCCTATCACATATGAGAGGATTACGCGGCGGCAGAGGCGGTCCTGCAGAGGCTTCCGGCTCACCTCCAGAAGACTGTCGGTGTCAAAGCTGCGGTCCAAATTCGGGTGGCTGTTGCGTATCTTAAATCGGTGGCGGCGCTCCATTGTTGAGATTAAGAAGAGCGGAACATCATCAAAAGGTTCTTCTAATTCAGCTGCGCAAGCTGCGAAGCTCAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCACCTCCTCCTTCTCAACGCCTCCTTCCACTATACCTACACATACCTTCTAA

Homology

[Close]

BLAST of CSPI03G00120 vs. TrEMBL
Match: A0A0A0L3I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60

Query: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 113
           KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF
Sbjct: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 112

[Close]

BLAST of CSPI03G00120 vs. TrEMBL
Match: V7CH86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G272000g PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-09
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI------- 60
           M  ++Y R+       CRGFRL  R+L V +LR +F + LR+    + S  E        
Sbjct: 1   MAHMSYSRVCSGNASRCRGFRLNPRKLYVLRLRKRFNFFLRVFQSCKLSYGEAIQVLKKV 60

Query: 61  --KKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
             +K G     ++N   +  K+ S  RSNSFYAEAIADCL+FIK TS+ S   S  P
Sbjct: 61  FCRKGGFKRNNTNNLVREDCKMGSCGRSNSFYAEAIADCLEFIKRTSTSSMDQSQDP 117

[Close]

BLAST of CSPI03G00120 vs. TrEMBL
Match: A0A165XTS4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-09
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 4   ITYERITRRQRRS----CRGFRLTSRRLSVSKLRSKFGWLLRILN-RWR------RSIVE 63
           + Y R+ R  RRS    CRGFRL +RR SV +LR+KF +L +IL+ RWR      R+I  
Sbjct: 5   LKYNRV-RDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICH 64

Query: 64  IKKSGTSSKGSSNSAAQAA--KLRSFRRSNSFYAEAIADCLDFIKTTS 99
             +   S +  S +A      +LRSF RSNSFY+EAIADCL+FIK +S
Sbjct: 65  SHRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSS 111

[Close]

BLAST of CSPI03G00120 vs. TrEMBL
Match: A0A151QN04_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047857 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI-----KK 60
           M  ++Y R++  +   CRGFRL  R+L V +LR +F + LR+ + W+ S  E      K 
Sbjct: 1   MGHMSYNRVSSGKVSRCRGFRLNPRKLYVLRLRKRFNFFLRLFDNWKLSYGEAIQLLKKM 60

Query: 61  SGTSS---KGSSNSAAQAAKL--------RSFRRSNSFYAEAIADCLDFIKTTSSFSTPP 106
            G  S   + +S S  +  K+        RS  RSNSFYAEAIADCL+FIK TS  S   
Sbjct: 61  VGIKSGFRRNNSRSLVREEKIKGQDDCRMRSCGRSNSFYAEAIADCLEFIKRTSISSMDQ 120

[Close]

BLAST of CSPI03G00120 vs. TrEMBL
Match: A0A0B2S3C7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014841 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 1


Query: 15  RSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI---------KKSGTSSKGSSN 74
           R  RGFRL  R+L V +LR +F + L + + W+ S  E          +KSG     S+N
Sbjct: 21  RCSRGFRLNPRKLYVLRLRKRFNFFLGLFDSWKLSYGEAIQLLKKVVCRKSGLKRNNSNN 80

Query: 75  SAAQAA-----------KLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
           S                K+RSF RSNSFYAEAIADCL+FIK TS  S   S  P
Sbjct: 81  STRSFVREEKIKGQDDCKMRSFGRSNSFYAEAIADCLEFIKRTSISSMDQSQDP 134

[Close]

BLAST of CSPI03G00120 vs. NCBI nr
Match: gi|700200456|gb|KGN55589.1| (hypothetical protein Csa_3G000130 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60
           MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGTSS 60

Query: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 113
           KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF
Sbjct: 61  KGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIPTHTF 112

[Close]

BLAST of CSPI03G00120 vs. NCBI nr
Match: gi|1021040735|gb|KZM98516.1| (hypothetical protein DCAR_014122 [Daucus carota subsp. sativus])

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 4   ITYERITRRQRRS----CRGFRLTSRRLSVSKLRSKFGWLLRILN-RWR------RSIVE 63
           + Y R+ R  RRS    CRGFRL +RR SV +LR+KF +L +IL+ RWR      R+I  
Sbjct: 5   LKYNRV-RDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICH 64

Query: 64  IKKSGTSSKGSSNSAAQAA--KLRSFRRSNSFYAEAIADCLDFIKTTS 99
             +   S +  S +A      +LRSF RSNSFY+EAIADCL+FIK +S
Sbjct: 65  SHRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSS 111

[Close]

BLAST of CSPI03G00120 vs. NCBI nr
Match: gi|593786453|ref|XP_007156267.1| (hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris])

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI------- 60
           M  ++Y R+       CRGFRL  R+L V +LR +F + LR+    + S  E        
Sbjct: 1   MAHMSYSRVCSGNASRCRGFRLNPRKLYVLRLRKRFNFFLRVFQSCKLSYGEAIQVLKKV 60

Query: 61  --KKSGTSSKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFSTPPSTIP 109
             +K G     ++N   +  K+ S  RSNSFYAEAIADCL+FIK TS+ S   S  P
Sbjct: 61  FCRKGGFKRNNTNNLVREDCKMGSCGRSNSFYAEAIADCLEFIKRTSTSSMDQSQDP 117

[Close]

BLAST of CSPI03G00120 vs. NCBI nr
Match: gi|1012318154|gb|KYP31687.1| (hypothetical protein KK1_047857 [Cajanus cajan])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEI-----KK 60
           M  ++Y R++  +   CRGFRL  R+L V +LR +F + LR+ + W+ S  E      K 
Sbjct: 1   MGHMSYNRVSSGKVSRCRGFRLNPRKLYVLRLRKRFNFFLRLFDNWKLSYGEAIQLLKKM 60

Query: 61  SGTSS---KGSSNSAAQAAKL--------RSFRRSNSFYAEAIADCLDFIKTTSSFSTPP 106
            G  S   + +S S  +  K+        RS  RSNSFYAEAIADCL+FIK TS  S   
Sbjct: 61  VGIKSGFRRNNSRSLVREEKIKGQDDCRMRSCGRSNSFYAEAIADCLEFIKRTSISSMDQ 120

[Close]

BLAST of CSPI03G00120 vs. NCBI nr
Match: gi|223532025|gb|EEF33835.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 5   TYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRS----IVEIKKSGTS 64
           +Y +I RR      RGFRL  +R SV +LR++F +L ++L+RW+ S    +  +K+S + 
Sbjct: 8   SYSKIGRRYHGYGGRGFRLNCKRFSVQRLRARFVYLFKLLSRWKSSYGHAVQSLKRSMSR 67

Query: 65  SKGSSNSAAQA----------AKLRSFRRSNSFYAEAIADCLDFIKTTS 99
           S G   + +             ++R+F RSNSFY+EAIADCL+FIK +S
Sbjct: 68  SSGIKRNTSSRRSLVVEVSSDCRMRTFGRSNSFYSEAIADCLEFIKRSS 116

The following BLAST results are available for this feature:

BLAST of CSPI03G00120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G00120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I7_CUCSA	1.4e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000130 PE=4 SV=1	[more]
V7CH86_PHAVU	3.4e-09	39.32	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G272000g PE=4 SV=1	[more]
A0A165XTS4_DAUCA	3.4e-09	48.15	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014121 PE=4 SV=1	[more]
A0A151QN04_CAJCA	1.7e-08	40.50	Uncharacterized protein OS=Cajanus cajan GN=KK1_047857 PE=4 SV=1	[more]
A0A0B2S3C7_GLYSO	2.2e-08	42.11	Uncharacterized protein OS=Glycine soja GN=glysoja_014841 PE=4 SV=1	[more]

BLAST of CSPI03G00120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G00120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200456\|gb\|KGN55589.1\|	2.1e-52	100.00	hypothetical protein Csa_3G000130 [Cucumis sativus]	[more]
gi\|1021040735\|gb\|KZM98516.1\|	4.8e-09	48.15	hypothetical protein DCAR_014122 [Daucus carota subsp. sativus]	[more]
gi\|593786453\|ref\|XP_007156267.1\|	4.8e-09	39.32	hypothetical protein PHAVU_003G272000g [Phaseolus vulgaris]	[more]
gi\|1012318154\|gb\|KYP31687.1\|	2.4e-08	40.50	hypothetical protein KK1_047857 [Cajanus cajan]	[more]
gi\|223532025\|gb\|EEF33835.1\|	3.1e-08	39.45	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00120.1	CSPI03G00120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34996	FAMILY NOT NAMED	coord: 1..98 score: 8.2
None	No IPR available	PANTHER	PTHR34996:SF3	SUBFAMILY NOT NAMED	coord: 1..98 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G00120	Cla008960	Watermelon (97103) v1	cpiwmB200
CSPI03G00120	Csa3G000130	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G00120	MELO3C013706	Melon (DHL92) v3.5.1	cpimeB240
CSPI03G00120	ClCG10G000110	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G00120	Lsi07G010360	Bottle gourd (USVL1VR-Ls)	cpilsiB227
CSPI03G00120	MELO3C013706.2	Melon (DHL92) v3.6.1	cpimedB225
CSPI03G00120	CsaV3_UNG155170	Cucumber (Chinese Long) v3	cpicucB158
CSPI03G00120	CsaV3_3G000130	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G00120	Cla97C10G184640	Watermelon (97103) v2	cpiwmbB184
CSPI03G00120	Bhi11G000271	Wax gourd	cpiwgoB246
CSPI03G00120	CmoCh06G001610	Cucurbita moschata (Rifu)	cmocpiB825
CSPI03G00120	Cp4.1LG08g12780	Cucurbita pepo (Zucchini)	cpecpiB853
CSPI03G00120	CsGy3G000080	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G00120	Carg01166	Silver-seed gourd	carcpiB0179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G00120	Cucurbita pepo (Zucchini)	cpecpiB215
CSPI03G00120	Cucurbita pepo (Zucchini)	cpecpiB557
CSPI03G00120	Silver-seed gourd	carcpiB0467
CSPI03G00120	Cucumber (Gy14) v1	cgycpiB484
CSPI03G00120	Cucurbita maxima (Rimu)	cmacpiB332
CSPI03G00120	Cucurbita maxima (Rimu)	cmacpiB840
CSPI03G00120	Cucurbita moschata (Rifu)	cmocpiB323