CsGy2G027040 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G027040
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein
Location	Chr2 : 34668091 .. 34668563 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGGTATTTCTTTTTCTTTCTTCAATCTGTTTGGTATTGATATTGTACCATGTTGAGTGTGAACACAAGTGGACATTACCTATTGATAGAAACATGTGTGAAGGAGTGATTTGTGAGGTCCACATTTTCTTTCACTTGTTTTTGTTTTGTAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

mRNA sequence

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Coding sequence (CDS)

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Protein sequence

MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP

Homology

[Close]

BLAST of CsGy2G027040 vs. NCBI nr
Match: KGN63385.1 (hypothetical protein Csa_2G435490 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60
           MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV
Sbjct: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60

Query: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 108
           HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP
Sbjct: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]

BLAST of CsGy2G027040 vs. NCBI nr
Match: XP_008452225.1 (PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 9.5e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 173 FYRRQIPSQRV 183

[Close]

BLAST of CsGy2G027040 vs. NCBI nr
Match: XP_008452226.1 (PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 9.5e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 168 FYRRQIPSQRV 178

[Close]

BLAST of CsGy2G027040 vs. NCBI nr
Match: XP_011650576.1 (PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus] >KGN56275.1 hypothetical protein Csa_3G110720 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 84  SAI 87
             +
Sbjct: 181 QRV 183

[Close]

BLAST of CsGy2G027040 vs. NCBI nr
Match: XP_011650577.1 (PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 116 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 175

Query: 84  SAI 87
             +
Sbjct: 176 QRV 178

[Close]

BLAST of CsGy2G027040 vs. TAIR10
Match: AT1G10280.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-15
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  +E     +  K  FMFLTRGPLPMLPLW++FF  ++K  S++VH  PGY++N+S  S
Sbjct: 130 VPVKEEYPYDRVPKVAFMFLTRGPLPMLPLWEKFFKGNEKYLSVYVHTPPGYDMNVSRDS 189

Query: 75  VFYRRADPQSAIE 88
            FY R  P   +E
Sbjct: 190 PFYDRQIPSQRVE 202

[Close]

BLAST of CsGy2G027040 vs. TAIR10
Match: AT3G21310.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-14
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAI 87
           K  FMFLT+GPLP  PLW+RFF  H+  +SI+VH LP Y  +  +SSVFYRR  P   +
Sbjct: 115 KMAFMFLTKGPLPFAPLWERFFKGHEGFYSIYVHTLPNYRSDFPSSSVFYRRQIPSQHV 173

[Close]

BLAST of CsGy2G027040 vs. TAIR10
Match: AT1G51770.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-14
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 17  ERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVF 76
           +R     ++  K  FMFL +GPLP  PLW++F   H+ L+SI+VH+LP Y+ + S SSVF
Sbjct: 113 QRNGYPFRRVPKLAFMFLAKGPLPFAPLWEKFCKGHEGLYSIYVHSLPSYKSDFSRSSVF 172

Query: 77  YRRADPQSAI 87
           YRR  P  A+
Sbjct: 173 YRRYIPSQAV 182

[Close]

BLAST of CsGy2G027040 vs. TAIR10
Match: AT1G68380.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 87
           K  FMFLT GPLP+ PLW+RFF  H+ LF+I+VH    Y+  +   SVFY R  P   ++
Sbjct: 124 KVAFMFLTWGPLPLAPLWERFFRGHEGLFTIYVHTNSSYDEFMPQDSVFYGRRIPSKRVD 183

[Close]

BLAST of CsGy2G027040 vs. TAIR10
Match: AT5G25970.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-11
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 87
           K  FMFLT GPLP+ PLW+R    H+KL+S+++H+          SSVFYRR  P    E
Sbjct: 119 KIAFMFLTMGPLPLAPLWERLLKGHEKLYSVYIHSPVSSSAKFPASSVFYRRHIPSQVAE 178

[Close]

BLAST of CsGy2G027040 vs. TrEMBL
Match: tr|A0A0A0LNA6|A0A0A0LNA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435490 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.1e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60
           MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV
Sbjct: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60

Query: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 108
           HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP
Sbjct: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]

BLAST of CsGy2G027040 vs. TrEMBL
Match: tr|A0A1S3BTE2|A0A1S3BTE2_CUCME (uncharacterized protein LOC103493307 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493307 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 168 FYRRQIPSQRV 178

[Close]

BLAST of CsGy2G027040 vs. TrEMBL
Match: tr|A0A1S3BSR4|A0A1S3BSR4_CUCME (uncharacterized protein LOC103493307 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493307 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 173 FYRRQIPSQRV 183

[Close]

BLAST of CsGy2G027040 vs. TrEMBL
Match: tr|A0A0A0L2Q4|A0A0A0L2Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110720 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 84  SAI 87
             +
Sbjct: 181 QRV 183

[Close]

BLAST of CsGy2G027040 vs. TrEMBL
Match: tr|A0A2P5E2V0|A0A2P5E2V0_9ROSA (Glycosyl transferase OS=Trema orientalis OX=63057 GN=TorRG33x02_234950 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V ++E    ++  K  FMFLTRGPLP+LPLW+RFF  H+KLFSI+VHALPGY+LN+S++S
Sbjct: 113 VPKKEEFPYERVPKVAFMFLTRGPLPLLPLWERFFRGHEKLFSIYVHALPGYKLNVSSTS 172

Query: 75  VFYRRADPQSAI 87
            FYRR  P   +
Sbjct: 173 PFYRREIPSQQV 184

The following BLAST results are available for this feature:

BLAST of CsGy2G027040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63385.1	1.1e-54	100.00	hypothetical protein Csa_2G435490 [Cucumis sativus]	[more]
XP_008452225.1	9.5e-19	66.20	PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo]	[more]
XP_008452226.1	9.5e-19	66.20	PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo]	[more]
XP_011650576.1	2.1e-18	71.43	PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011650577.1	2.1e-18	71.43	PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus]	[more]

BLAST of CsGy2G027040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10280.1	2.0e-15	47.95	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT3G21310.1	1.7e-14	54.24	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT1G51770.1	2.9e-14	47.14	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT1G68380.1	1.8e-11	48.33	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT5G25970.1	3.0e-11	46.67	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]

BLAST of CsGy2G027040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G027040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNA6\|A0A0A0LNA6_CUCSA	7.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435490 PE=4 SV=1	[more]
tr\|A0A1S3BTE2\|A0A1S3BTE2_CUCME	6.3e-19	66.20	uncharacterized protein LOC103493307 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BSR4\|A0A1S3BSR4_CUCME	6.3e-19	66.20	uncharacterized protein LOC103493307 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L2Q4\|A0A0A0L2Q4_CUCSA	1.4e-18	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110720 PE=4 SV=1	[more]
tr\|A0A2P5E2V0\|A0A2P5E2V0_9ROSA	1.0e-16	58.33	Glycosyl transferase OS=Trema orientalis OX=63057 GN=TorRG33x02_234950 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008375	acetylglucosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003406	Glyco_trans_14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008375	acetylglucosaminyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G027040.1	CsGy2G027040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003406	Glycosyl transferase, family 14	PFAM	PF02485	Branch	coord: 31..84 e-value: 1.1E-11 score: 44.6
None	No IPR available	PANTHER	PTHR31042:SF3	SUBFAMILY NOT NAMED	coord: 20..88
None	No IPR available	PANTHER	PTHR31042	FAMILY NOT NAMED	coord: 20..88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G027040	Csa2G435490	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G027040	CSPI02G27600	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G027040	CsaV3_2G036250	Cucumber (Chinese Long) v3	cgybcucB065

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G027040	Cucurbita maxima (Rimu)	cgybcmaB220
CsGy2G027040	Cucurbita maxima (Rimu)	cgybcmaB231
CsGy2G027040	Cucurbita moschata (Rifu)	cgybcmoB211
CsGy2G027040	Cucurbita moschata (Rifu)	cgybcmoB222
CsGy2G027040	Cucurbita pepo (Zucchini)	cgybcpeB196
CsGy2G027040	Cucurbita pepo (Zucchini)	cgybcpeB242
CsGy2G027040	Bottle gourd (USVL1VR-Ls)	cgyblsiB087
CsGy2G027040	Melon (DHL92) v3.5.1	cgybmeB083
CsGy2G027040	Melon (DHL92) v3.6.1	cgybmedB080
CsGy2G027040	Watermelon (Charleston Gray)	cgybwcgB090
CsGy2G027040	Watermelon (97103) v1	cgybwmB100
CsGy2G027040	Silver-seed gourd	carcgybB0428
CsGy2G027040	Silver-seed gourd	carcgybB1036
CsGy2G027040	Watermelon (97103) v2	cgybwmbB161
CsGy2G027040	Wax gourd	cgybwgoB168