CsaV3_2G036250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G036250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Location	chr2 : 24460364 .. 24460601 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAG

mRNA sequence

ATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAG

Coding sequence (CDS)

ATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAG

Protein sequence

MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSX

Homology

[Close]

BLAST of CsaV3_2G036250 vs. NCBI nr
Match: KGN63385.1 (hypothetical protein Csa_2G435490 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.6e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG 60
          MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG
Sbjct: 6  MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG 65

Query: 61 YELNLSTSSVFYRRADPQS 80
          YELNLSTSSVFYRRADPQS
Sbjct: 66 YELNLSTSSVFYRRADPQS 84

[Close]

BLAST of CsaV3_2G036250 vs. NCBI nr
Match: XP_008452225.1 (PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 11  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 70
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 71  FYRRADP 78
           FYRR  P
Sbjct: 173 FYRRQIP 179

[Close]

BLAST of CsaV3_2G036250 vs. NCBI nr
Match: XP_008452226.1 (PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 11  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 70
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 71  FYRRADP 78
           FYRR  P
Sbjct: 168 FYRRQIP 174

[Close]

BLAST of CsaV3_2G036250 vs. NCBI nr
Match: XP_011650576.1 (PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus] >KGN56275.1 hypothetical protein Csa_3G110720 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 19  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADP 78
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIP 179

[Close]

BLAST of CsaV3_2G036250 vs. NCBI nr
Match: XP_011650577.1 (PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 19  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADP 78
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P
Sbjct: 116 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIP 174

[Close]

BLAST of CsaV3_2G036250 vs. TAIR10
Match: AT1G10280.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 76.6 bits (187), Expect = 7.5e-15
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 10  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 69
           V  +E     +  K  FMFLTRGPLPMLPLW++FF  ++K  S++VH  PGY++N+S  S
Sbjct: 130 VPVKEEYPYDRVPKVAFMFLTRGPLPMLPLWEKFFKGNEKYLSVYVHTPPGYDMNVSRDS 189

Query: 70  VFYRRADP 78
            FY R  P
Sbjct: 190 PFYDRQIP 197

[Close]

BLAST of CsaV3_2G036250 vs. TAIR10
Match: AT3G21310.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-14
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 23  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADP 78
           K  FMFLT+GPLP  PLW+RFF  H+  +SI+VH LP Y  +  +SSVFYRR  P
Sbjct: 115 KMAFMFLTKGPLPFAPLWERFFKGHEGFYSIYVHTLPNYRSDFPSSSVFYRRQIP 169

[Close]

BLAST of CsaV3_2G036250 vs. TAIR10
Match: AT1G51770.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 12  ERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVF 71
           +R     ++  K  FMFL +GPLP  PLW++F   H+ L+SI+VH+LP Y+ + S SSVF
Sbjct: 113 QRNGYPFRRVPKLAFMFLAKGPLPFAPLWEKFCKGHEGLYSIYVHSLPSYKSDFSRSSVF 172

Query: 72  YRRADP 78
           YRR  P
Sbjct: 173 YRRYIP 178

[Close]

BLAST of CsaV3_2G036250 vs. TAIR10
Match: AT1G68380.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-11
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 23  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADP 78
           K  FMFLT GPLP+ PLW+RFF  H+ LF+I+VH    Y+  +   SVFY R  P
Sbjct: 124 KVAFMFLTWGPLPLAPLWERFFRGHEGLFTIYVHTNSSYDEFMPQDSVFYGRRIP 178

[Close]

BLAST of CsaV3_2G036250 vs. TAIR10
Match: AT5G25970.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-11
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 23  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADP 78
           K  FMFLT GPLP+ PLW+R    H+KL+S+++H+          SSVFYRR  P
Sbjct: 119 KIAFMFLTMGPLPLAPLWERLLKGHEKLYSVYIHSPVSSSAKFPASSVFYRRHIP 173

[Close]

BLAST of CsaV3_2G036250 vs. TrEMBL
Match: tr|A0A0A0LNA6|A0A0A0LNA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435490 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG 60
          MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG
Sbjct: 6  MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG 65

Query: 61 YELNLSTSSVFYRRADPQS 80
          YELNLSTSSVFYRRADPQS
Sbjct: 66 YELNLSTSSVFYRRADPQS 84

[Close]

BLAST of CsaV3_2G036250 vs. TrEMBL
Match: tr|A0A1S3BTE2|A0A1S3BTE2_CUCME (uncharacterized protein LOC103493307 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493307 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-19
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 11  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 70
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 71  FYRRADP 78
           FYRR  P
Sbjct: 168 FYRRQIP 174

[Close]

BLAST of CsaV3_2G036250 vs. TrEMBL
Match: tr|A0A1S3BSR4|A0A1S3BSR4_CUCME (uncharacterized protein LOC103493307 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493307 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-19
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 11  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 70
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 71  FYRRADP 78
           FYRR  P
Sbjct: 173 FYRRQIP 179

[Close]

BLAST of CsaV3_2G036250 vs. TrEMBL
Match: tr|A0A0A0L2Q4|A0A0A0L2Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110720 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 19  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADP 78
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIP 179

[Close]

BLAST of CsaV3_2G036250 vs. TrEMBL
Match: tr|A0A2P5E2V0|A0A2P5E2V0_9ROSA (Glycosyl transferase OS=Trema orientalis OX=63057 GN=TorRG33x02_234950 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-17
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 10  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 69
           V ++E    ++  K  FMFLTRGPLP+LPLW+RFF  H+KLFSI+VHALPGY+LN+S++S
Sbjct: 113 VPKKEEFPYERVPKVAFMFLTRGPLPLLPLWERFFRGHEKLFSIYVHALPGYKLNVSSTS 172

Query: 70  VFYRRADP 78
            FYRR  P
Sbjct: 173 PFYRREIP 180

The following BLAST results are available for this feature:

BLAST of CsaV3_2G036250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63385.1	2.6e-37	100.00	hypothetical protein Csa_2G435490 [Cucumis sativus]	[more]
XP_008452225.1	1.2e-18	70.15	PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo]	[more]
XP_008452226.1	1.2e-18	70.15	PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo]	[more]
XP_011650576.1	2.7e-18	76.27	PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011650577.1	2.7e-18	76.27	PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_2G036250 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10280.1	7.5e-15	50.00	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT3G21310.1	1.3e-14	58.18	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT1G51770.1	1.1e-13	48.48	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT1G68380.1	3.0e-11	52.73	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT5G25970.1	5.1e-11	49.09	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]

BLAST of CsaV3_2G036250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNA6\|A0A0A0LNA6_CUCSA	1.7e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435490 PE=4 SV=1	[more]
tr\|A0A1S3BTE2\|A0A1S3BTE2_CUCME	8.0e-19	70.15	uncharacterized protein LOC103493307 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BSR4\|A0A1S3BSR4_CUCME	8.0e-19	70.15	uncharacterized protein LOC103493307 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L2Q4\|A0A0A0L2Q4_CUCSA	1.8e-18	76.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110720 PE=4 SV=1	[more]
tr\|A0A2P5E2V0\|A0A2P5E2V0_9ROSA	9.8e-17	61.76	Glycosyl transferase OS=Trema orientalis OX=63057 GN=TorRG33x02_234950 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008375	acetylglucosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003406	Glyco_trans_14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008375	acetylglucosaminyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G036250.1	CsaV3_2G036250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003406	Glycosyl transferase, family 14	PFAM	PF02485	Branch	coord: 26..77 e-value: 8.6E-12 score: 45.0
None	No IPR available	PANTHER	PTHR31042	FAMILY NOT NAMED	coord: 15..77
None	No IPR available	PANTHER	PTHR31042:SF3	SUBFAMILY NOT NAMED	coord: 15..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G036250	CSPI02G27600	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G036250	CsGy2G027040	Cucumber (Gy14) v2	cgybcucB065

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G036250	Silver-seed gourd	carcucB1100
CsaV3_2G036250	Silver-seed gourd	carcucB0453
CsaV3_2G036250	Cucumber (Gy14) v1	cgycucB495
CsaV3_2G036250	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G036250	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G036250	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G036250	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G036250	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G036250	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G036250	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G036250	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G036250	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G036250	Watermelon (Charleston Gray)	cucwcgB106
CsaV3_2G036250	Watermelon (97103) v1	cucwmB114
CsaV3_2G036250	Watermelon (97103) v2	cucwmbB168
CsaV3_2G036250	Wax gourd	cucwgoB180