Csa2G435490 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G435490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCore-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; contains IPR003406 (Glycosyl transferase, family 14)
LocationChr2 : 22821148 .. 22821620 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGGTATTTCTTTTTCTTTCTTCAATCTGTTTGGTATTGATATTGTACCATGTTGAGTGTGAACACAAGTGGACATTACCTATTGATAGAAACATGTGTGAAGGAGTGATTTGTGAGGTCCACATTTTCTTTCACTTGTTTTTGTTTTGTAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

mRNA sequence

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Coding sequence (CDS)

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Protein sequence

MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP*
Homology
[Close]
BLAST of Csa2G435490 vs. TrEMBL
Match: A0A0A0LNA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435490 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60
           MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV
Sbjct: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60

Query: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 108
           HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP
Sbjct: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]
BLAST of Csa2G435490 vs. TrEMBL
Match: A0A0A0L2Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110720 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 84  SAI 87
             +
Sbjct: 181 QRV 183

[Close]
BLAST of Csa2G435490 vs. TrEMBL
Match: F6HK07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01710 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-15
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  R     ++  K  FMFLTRGPLP++PLW+RFF  H K FS++VHALPG+ELN+S  S
Sbjct: 94  VPRRAEYPFKRVPKVAFMFLTRGPLPLMPLWERFFEGHRKYFSVYVHALPGFELNVSMHS 153

Query: 75  VFYRRADPQSAIE 88
            FY+R  P  ++E
Sbjct: 154 AFYKRQIPSKSVE 166

[Close]
BLAST of Csa2G435490 vs. TrEMBL
Match: W9RJ51_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010966 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1 

Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V ++E    ++  K  FMFLTRG LP+LPLW+R F  H+KLFSI+VHALPGY+LN+ST+S
Sbjct: 113 VPQKEEYPYKRVPKVAFMFLTRGALPLLPLWERLFRGHEKLFSIYVHALPGYKLNVSTTS 172

Query: 75  VFYRRADPQSAI 87
            F+RR  P   +
Sbjct: 173 PFHRREIPSQHV 184

[Close]
BLAST of Csa2G435490 vs. TrEMBL
Match: V4T5B9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001419mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  +E    +++ +  FMFLTRGPLP+LPLW+RFF  H+K FSI+VHALPGY+LN+S+ S
Sbjct: 110 VPYKEEYPFERTPRVAFMFLTRGPLPLLPLWERFFKGHEKYFSIYVHALPGYKLNVSSDS 169

Query: 75  VFYRRADP 83
            FY R  P
Sbjct: 170 PFYGRQIP 177

[Close]
BLAST of Csa2G435490 vs. TAIR10
Match: AT1G10280.1 (AT1G10280.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-15
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  +E     +  K  FMFLTRGPLPMLPLW++FF  ++K  S++VH  PGY++N+S  S
Sbjct: 130 VPVKEEYPYDRVPKVAFMFLTRGPLPMLPLWEKFFKGNEKYLSVYVHTPPGYDMNVSRDS 189

Query: 75  VFYRRADPQSAIE 88
            FY R  P   +E
Sbjct: 190 PFYDRQIPSQRVE 202

[Close]
BLAST of Csa2G435490 vs. TAIR10
Match: AT3G21310.1 (AT3G21310.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-14
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAI 87
           K  FMFLT+GPLP  PLW+RFF  H+  +SI+VH LP Y  +  +SSVFYRR  P   +
Sbjct: 115 KMAFMFLTKGPLPFAPLWERFFKGHEGFYSIYVHTLPNYRSDFPSSSVFYRRQIPSQHV 173

[Close]
BLAST of Csa2G435490 vs. TAIR10
Match: AT1G51770.1 (AT1G51770.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-14
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 17  ERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVF 76
           +R     ++  K  FMFL +GPLP  PLW++F   H+ L+SI+VH+LP Y+ + S SSVF
Sbjct: 113 QRNGYPFRRVPKLAFMFLAKGPLPFAPLWEKFCKGHEGLYSIYVHSLPSYKSDFSRSSVF 172

Query: 77  YRRADPQSAI 87
           YRR  P  A+
Sbjct: 173 YRRYIPSQAV 182

[Close]
BLAST of Csa2G435490 vs. TAIR10
Match: AT1G68380.1 (AT1G68380.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-11
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 87
           K  FMFLT GPLP+ PLW+RFF  H+ LF+I+VH    Y+  +   SVFY R  P   ++
Sbjct: 124 KVAFMFLTWGPLPLAPLWERFFRGHEGLFTIYVHTNSSYDEFMPQDSVFYGRRIPSKRVD 183

[Close]
BLAST of Csa2G435490 vs. TAIR10
Match: AT5G25970.1 (AT5G25970.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 1 

Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 87
           K  FMFLT GPLP+ PLW+R    H+KL+S+++H+          SSVFYRR  P    E
Sbjct: 119 KIAFMFLTMGPLPLAPLWERLLKGHEKLYSVYIHSPVSSSAKFPASSVFYRRHIPSQVAE 178

[Close]
BLAST of Csa2G435490 vs. NCBI nr
Match: gi|700208266|gb|KGN63385.1| (hypothetical protein Csa_2G435490 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 5.6e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60
           MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV
Sbjct: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60

Query: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 108
           HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP
Sbjct: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]
BLAST of Csa2G435490 vs. NCBI nr
Match: gi|659102622|ref|XP_008452226.1| (PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 168 FYRRQIPSQRV 178

[Close]
BLAST of Csa2G435490 vs. NCBI nr
Match: gi|659102620|ref|XP_008452225.1| (PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 173 FYRRQIPSQRV 183

[Close]
BLAST of Csa2G435490 vs. NCBI nr
Match: gi|778676402|ref|XP_011650576.1| (PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 84  SAI 87
             +
Sbjct: 181 QRV 183

[Close]
BLAST of Csa2G435490 vs. NCBI nr
Match: gi|778676405|ref|XP_011650577.1| (PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 116 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 175

Query: 84  SAI 87
             +
Sbjct: 176 QRV 178

The following BLAST results are available for this feature:
BLAST of Csa2G435490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA6_CUCSA3.9e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435490 PE=4 SV=1[more]
A0A0A0L2Q4_CUCSA2.2e-1871.43Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110720 PE=4 SV=1[more]
F6HK07_VITVI6.7e-1553.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01710 PE=4 SV=... [more]
W9RJ51_9ROSA1.1e-1455.56Uncharacterized protein OS=Morus notabilis GN=L484_010966 PE=4 SV=1[more]
V4T5B9_9ROSI1.5e-1457.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001419mg PE=4 SV=1[more]
BLAST of Csa2G435490 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10280.14.6e-1547.95 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p... [more]
AT3G21310.13.9e-1454.24 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p... [more]
AT1G51770.16.6e-1447.14 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p... [more]
AT1G68380.14.0e-1148.33 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p... [more]
AT5G25970.16.8e-1146.67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p... [more]
BLAST of Csa2G435490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208266|gb|KGN63385.1|5.6e-55100.00hypothetical protein Csa_2G435490 [Cucumis sativus][more]
gi|659102622|ref|XP_008452226.1|1.1e-1866.20PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo][more]
gi|659102620|ref|XP_008452225.1|1.1e-1866.20PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo][more]
gi|778676402|ref|XP_011650576.1|3.2e-1871.43PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus][more]
gi|778676405|ref|XP_011650577.1|3.2e-1871.43PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003406Glyco_trans_14
Vocabulary: Molecular Function
TermDefinition
GO:0008375acetylglucosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008375 acetylglucosaminyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G435490.1Csa2G435490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003406Glycosyl transferase, family 14PFAMPF02485Branchcoord: 31..84
score: 1.2
NoneNo IPR availablePANTHERPTHR31042FAMILY NOT NAMEDcoord: 31..87
score: 1.2
NoneNo IPR availablePANTHERPTHR31042:SF3SUBFAMILY NOT NAMEDcoord: 31..87
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G435490CSPI02G27600Wild cucumber (PI 183967)cpicuB065
Csa2G435490CsGy2G027040Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G435490Melon (DHL92) v3.6.1cumedB088
Csa2G435490Silver-seed gourdcarcuB0452
Csa2G435490Silver-seed gourdcarcuB1067
Csa2G435490Watermelon (97103) v2cuwmbB167
Csa2G435490Wax gourdcuwgoB174
Csa2G435490Wax gourdcuwgoB187
Csa2G435490Cucumber (Gy14) v1cgycuB456
Csa2G435490Cucurbita maxima (Rimu)cmacuB544
Csa2G435490Cucurbita maxima (Rimu)cmacuB590
Csa2G435490Cucurbita moschata (Rifu)cmocuB533
Csa2G435490Cucurbita moschata (Rifu)cmocuB579
Csa2G435490Melon (DHL92) v3.5.1cumeB086
Csa2G435490Watermelon (Charleston Gray)cuwcgB092
Csa2G435490Watermelon (97103) v1cuwmB102
Csa2G435490Cucurbita pepo (Zucchini)cpecuB270
Csa2G435490Cucurbita pepo (Zucchini)cpecuB706
Csa2G435490Bottle gourd (USVL1VR-Ls)culsiB094