Csa2G435490.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G435490.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; contains IPR003406 (Glycosyl transferase, family 14)
Location	Chr2 : 22821148 .. 22821620 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGGTATTTCTTTTTCTTTCTTCAATCTGTTTGGTATTGATATTGTACCATGTTGAGTGTGAACACAAGTGGACATTACCTATTGATAGAAACATGTGTGAAGGAGTGATTTGTGAGGTCCACATTTTCTTTCACTTGTTTTTGTTTTGTAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

mRNA sequence

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Coding sequence (CDS)

ATGCTATGTCTGATGATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCCCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCTCAGTCAGCTATAGAGGTACTCCACATGGACAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Protein sequence

MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP*

Homology

[Close]

BLAST of Csa2G435490.1 vs. TrEMBL
Match: A0A0A0LNA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435490 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60
           MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV
Sbjct: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60

Query: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 108
           HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP
Sbjct: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]

BLAST of Csa2G435490.1 vs. TrEMBL
Match: A0A0A0L2Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110720 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 84  SAI 87
             +
Sbjct: 181 QRV 183

[Close]

BLAST of Csa2G435490.1 vs. TrEMBL
Match: F6HK07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01710 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-15
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  R     ++  K  FMFLTRGPLP++PLW+RFF  H K FS++VHALPG+ELN+S  S
Sbjct: 94  VPRRAEYPFKRVPKVAFMFLTRGPLPLMPLWERFFEGHRKYFSVYVHALPGFELNVSMHS 153

Query: 75  VFYRRADPQSAIE 88
            FY+R  P  ++E
Sbjct: 154 AFYKRQIPSKSVE 166

[Close]

BLAST of Csa2G435490.1 vs. TrEMBL
Match: W9RJ51_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010966 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V ++E    ++  K  FMFLTRG LP+LPLW+R F  H+KLFSI+VHALPGY+LN+ST+S
Sbjct: 113 VPQKEEYPYKRVPKVAFMFLTRGALPLLPLWERLFRGHEKLFSIYVHALPGYKLNVSTTS 172

Query: 75  VFYRRADPQSAI 87
            F+RR  P   +
Sbjct: 173 PFHRREIPSQHV 184

[Close]

BLAST of Csa2G435490.1 vs. TrEMBL
Match: V4T5B9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001419mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  +E    +++ +  FMFLTRGPLP+LPLW+RFF  H+K FSI+VHALPGY+LN+S+ S
Sbjct: 110 VPYKEEYPFERTPRVAFMFLTRGPLPLLPLWERFFKGHEKYFSIYVHALPGYKLNVSSDS 169

Query: 75  VFYRRADP 83
            FY R  P
Sbjct: 170 PFYGRQIP 177

[Close]

BLAST of Csa2G435490.1 vs. TAIR10
Match: AT1G10280.1 (AT1G10280.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-15
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 15  VKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 74
           V  +E     +  K  FMFLTRGPLPMLPLW++FF  ++K  S++VH  PGY++N+S  S
Sbjct: 130 VPVKEEYPYDRVPKVAFMFLTRGPLPMLPLWEKFFKGNEKYLSVYVHTPPGYDMNVSRDS 189

Query: 75  VFYRRADPQSAIE 88
            FY R  P   +E
Sbjct: 190 PFYDRQIPSQRVE 202

[Close]

BLAST of Csa2G435490.1 vs. TAIR10
Match: AT3G21310.1 (AT3G21310.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-14
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAI 87
           K  FMFLT+GPLP  PLW+RFF  H+  +SI+VH LP Y  +  +SSVFYRR  P   +
Sbjct: 115 KMAFMFLTKGPLPFAPLWERFFKGHEGFYSIYVHTLPNYRSDFPSSSVFYRRQIPSQHV 173

[Close]

BLAST of Csa2G435490.1 vs. TAIR10
Match: AT1G51770.1 (AT1G51770.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-14
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 17  ERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVF 76
           +R     ++  K  FMFL +GPLP  PLW++F   H+ L+SI+VH+LP Y+ + S SSVF
Sbjct: 113 QRNGYPFRRVPKLAFMFLAKGPLPFAPLWEKFCKGHEGLYSIYVHSLPSYKSDFSRSSVF 172

Query: 77  YRRADPQSAI 87
           YRR  P  A+
Sbjct: 173 YRRYIPSQAV 182

[Close]

BLAST of Csa2G435490.1 vs. TAIR10
Match: AT1G68380.1 (AT1G68380.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-11
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 87
           K  FMFLT GPLP+ PLW+RFF  H+ LF+I+VH    Y+  +   SVFY R  P   ++
Sbjct: 124 KVAFMFLTWGPLPLAPLWERFFRGHEGLFTIYVHTNSSYDEFMPQDSVFYGRRIPSKRVD 183

[Close]

BLAST of Csa2G435490.1 vs. TAIR10
Match: AT5G25970.1 (AT5G25970.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 1


Query: 28  KSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 87
           K  FMFLT GPLP+ PLW+R    H+KL+S+++H+          SSVFYRR  P    E
Sbjct: 119 KIAFMFLTMGPLPLAPLWERLLKGHEKLYSVYIHSPVSSSAKFPASSVFYRRHIPSQVAE 178

[Close]

BLAST of Csa2G435490.1 vs. NCBI nr
Match: gi|700208266|gb|KGN63385.1| (hypothetical protein Csa_2G435490 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 5.6e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60
           MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV
Sbjct: 1   MLCLMMSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHV 60

Query: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 108
           HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP
Sbjct: 61  HALPGYELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]

BLAST of Csa2G435490.1 vs. NCBI nr
Match: gi|659102622|ref|XP_008452226.1| (PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 168 FYRRQIPSQRV 178

[Close]

BLAST of Csa2G435490.1 vs. NCBI nr
Match: gi|659102620|ref|XP_008452225.1| (PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 16  KERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 75
           K       ++  K  FMFLTRGPLPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 76  FYRRADPQSAI 87
           FYRR  P   +
Sbjct: 173 FYRRQIPSQRV 183

[Close]

BLAST of Csa2G435490.1 vs. NCBI nr
Match: gi|778676402|ref|XP_011650576.1| (PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 84  SAI 87
             +
Sbjct: 181 QRV 183

[Close]

BLAST of Csa2G435490.1 vs. NCBI nr
Match: gi|778676405|ref|XP_011650577.1| (PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 24  QKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 83
           ++  K  FMFLTRGPLPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 116 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 175

Query: 84  SAI 87
             +
Sbjct: 176 QRV 178

The following BLAST results are available for this feature:

BLAST of Csa2G435490.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA6_CUCSA	3.9e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435490 PE=4 SV=1	[more]
A0A0A0L2Q4_CUCSA	2.2e-18	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110720 PE=4 SV=1	[more]
F6HK07_VITVI	6.7e-15	53.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01710 PE=4 SV=...	[more]
W9RJ51_9ROSA	1.1e-14	55.56	Uncharacterized protein OS=Morus notabilis GN=L484_010966 PE=4 SV=1	[more]
V4T5B9_9ROSI	1.5e-14	57.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001419mg PE=4 SV=1	[more]

BLAST of Csa2G435490.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10280.1	4.6e-15	47.95	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT3G21310.1	3.9e-14	54.24	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT1G51770.1	6.6e-14	47.14	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT1G68380.1	4.0e-11	48.33	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT5G25970.1	6.8e-11	46.67	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]

BLAST of Csa2G435490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208266\|gb\|KGN63385.1\|	5.6e-55	100.00	hypothetical protein Csa_2G435490 [Cucumis sativus]	[more]
gi\|659102622\|ref\|XP_008452226.1\|	1.1e-18	66.20	PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo]	[more]
gi\|659102620\|ref\|XP_008452225.1\|	1.1e-18	66.20	PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo]	[more]
gi\|778676402\|ref\|XP_011650576.1\|	3.2e-18	71.43	PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus]	[more]
gi\|778676405\|ref\|XP_011650577.1\|	3.2e-18	71.43	PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003406	Glyco_trans_14

Vocabulary: **Molecular Function**
Term	Definition
GO:0008375	acetylglucosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0008375	acetylglucosaminyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G435490	Csa2G435490	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa2G435490.1	Csa2G435490.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa2G435490.1.cds2	Csa2G435490.1.cds2	CDS
Csa2G435490.1.cds1	Csa2G435490.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003406	Glycosyl transferase, family 14	PFAM	PF02485	Branch	coord: 31..84 score: 1.2
None	No IPR available	PANTHER	PTHR31042	FAMILY NOT NAMED	coord: 31..87 score: 1.2
None	No IPR available	PANTHER	PTHR31042:SF3	SUBFAMILY NOT NAMED	coord: 31..87 score: 1.2