CsGy1G010270 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010270
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	stigma-specific STIG1-like protein 1
Location	Chr1 : 6400370 .. 6400840 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCTCAAAGCCATTATTCCTTTGGGTAGCTTTGATAATTGTATCTCATTATGTAGCTCATGCATCTATTGTTGAAATGAGTAACAAAGAGAATGTGACTTCGTTGGACGATGAAACTTTTGATCAACTTTCTCCGGTGGAGGAGACCAAAAATTCTCCATCGGGTTCGGTCCGTGGTCTTCTCTTTAACTTCGAGTCTTTGCAAAAGGGAGTGACGTGCAACAAATACCCTAGAGTTTGCCGAGCTAAGGGCAGCAAAGGGCCAGATTGTTGCAACAGGAAATGTGTAAATGTGGAGACGGATAGGAACAATTGTGGAATGTGTGGGAATAAATGCAAGTACTCGAGGATTTGTTGCAATGGGAGGTGTGTGAATCCGATGTTTAATAAGAAGCATTGTGGTGGATGCAACAATGAATGTAGTAAAGGAAACTATTGTGCGTTTGGGATGTGTGACTATGCTTAA

mRNA sequence

ATGAAGTTCTCAAAGCCATTATTCCTTTGGGTAGCTTTGATAATTGTATCTCATTATGTAGCTCATGCATCTATTGTTGAAATGAGTAACAAAGAGAATGTGACTTCGTTGGACGATGAAACTTTTGATCAACTTTCTCCGGTGGAGGAGACCAAAAATTCTCCATCGGGTTCGGTCCGTGGTCTTCTCTTTAACTTCGAGTCTTTGCAAAAGGGAGTGACGTGCAACAAATACCCTAGAGTTTGCCGAGCTAAGGGCAGCAAAGGGCCAGATTGTTGCAACAGGAAATGTGTAAATGTGGAGACGGATAGGAACAATTGTGGAATGTGTGGGAATAAATGCAAGTACTCGAGGATTTGTTGCAATGGGAGGTGTGTGAATCCGATGTTTAATAAGAAGCATTGTGGTGGATGCAACAATGAATGTAGTAAAGGAAACTATTGTGCGTTTGGGATGTGTGACTATGCTTAA

Coding sequence (CDS)

ATGAAGTTCTCAAAGCCATTATTCCTTTGGGTAGCTTTGATAATTGTATCTCATTATGTAGCTCATGCATCTATTGTTGAAATGAGTAACAAAGAGAATGTGACTTCGTTGGACGATGAAACTTTTGATCAACTTTCTCCGGTGGAGGAGACCAAAAATTCTCCATCGGGTTCGGTCCGTGGTCTTCTCTTTAACTTCGAGTCTTTGCAAAAGGGAGTGACGTGCAACAAATACCCTAGAGTTTGCCGAGCTAAGGGCAGCAAAGGGCCAGATTGTTGCAACAGGAAATGTGTAAATGTGGAGACGGATAGGAACAATTGTGGAATGTGTGGGAATAAATGCAAGTACTCGAGGATTTGTTGCAATGGGAGGTGTGTGAATCCGATGTTTAATAAGAAGCATTGTGGTGGATGCAACAATGAATGTAGTAAAGGAAACTATTGTGCGTTTGGGATGTGTGACTATGCTTAA

Protein sequence

MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGMCGNKCKYSRICCNGRCVNPMFNKKHCGGCNNECSKGNYCAFGMCDYA

Homology

[Close]

BLAST of CsGy1G010270 vs. NCBI nr
Match: XP_004145195.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSVR 60
           MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSVR
Sbjct: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSVR 60

Query: 61  GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM 110
           GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM
Sbjct: 61  GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM 109

[Close]

BLAST of CsGy1G010270 vs. NCBI nr
Match: XP_008440707.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSVR 60
           MK SK LFL VAL IVSHYVAHA+  EMSNKENVTS DDETFDQLSP+ ET+NSP GS+R
Sbjct: 1   MKSSKLLFLLVALTIVSHYVAHAAKAEMSNKENVTSSDDETFDQLSPM-ETENSPPGSLR 60

Query: 61  GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM 110
           GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM
Sbjct: 61  GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM 108

[Close]

BLAST of CsGy1G010270 vs. NCBI nr
Match: KGN64480.1 (hypothetical protein Csa_1G058150 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 28  MSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGS 87
           MSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGS
Sbjct: 1   MSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGS 60

Query: 88  KGPDCCNRKCVNVETDRNNCGM 110
           KGPDCCNRKCVNVETDRNNCGM
Sbjct: 61  KGPDCCNRKCVNVETDRNNCGM 82

[Close]

BLAST of CsGy1G010270 vs. NCBI nr
Match: XP_008440721.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSL-DDETFDQLSPVEETKNSPSGSV 60
           MK SK L   V  I  SHY +HA+ VE ++KEN T+L DDE  + L+P+E+ ++SP G  
Sbjct: 1   MKLSKLLLFLVLAITFSHYASHAAEVETNSKENATNLSDDEVSNHLAPIED-EDSPMGLA 60

Query: 61  RGLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 109
           R LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  RRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 109

[Close]

BLAST of CsGy1G010270 vs. NCBI nr
Match: XP_004145194.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64481.1 hypothetical protein Csa_1G058155 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSL-DDETFDQLSPVEETKNSPSGSV 60
           MK  K     V  II SHY +HA+ VE ++KEN T+L DDE  + L+ +E+ ++SP G  
Sbjct: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIED-EDSPLGLA 60

Query: 61  RGLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 109
           R LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  RRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 109

[Close]

BLAST of CsGy1G010270 vs. TAIR10
Match: AT1G11925.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 73  VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 109
           +TC+K  +VCR KGS G +CC +KCV++ T++ NCG
Sbjct: 57  LTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCG 92

[Close]

BLAST of CsGy1G010270 vs. TAIR10
Match: AT4G26880.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0


Query: 75  CNKYPRVCRAKGSKGPD----CCNRKCVNVETDRNNCG 109
           CN+ P +C   G  G +    CCN KC++V +D NNCG
Sbjct: 67  CNRNPEICTPYGGGGSNSTMTCCNNKCIDVSSDDNNCG 104

[Close]

BLAST of CsGy1G010270 vs. TrEMBL
Match: tr|A0A1S3B1R3|A0A1S3B1R3_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485044 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSVR 60
           MK SK LFL VAL IVSHYVAHA+  EMSNKENVTS DDETFDQLSP+ ET+NSP GS+R
Sbjct: 1   MKSSKLLFLLVALTIVSHYVAHAAKAEMSNKENVTSSDDETFDQLSPM-ETENSPPGSLR 60

Query: 61  GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM 110
           GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM
Sbjct: 61  GLLFNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGM 108

[Close]

BLAST of CsGy1G010270 vs. TrEMBL
Match: tr|A0A0A0LRD7|A0A0A0LRD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058150 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 28  MSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGS 87
           MSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGS
Sbjct: 1   MSNKENVTSLDDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKGVTCNKYPRVCRAKGS 60

Query: 88  KGPDCCNRKCVNVETDRNNCGM 110
           KGPDCCNRKCVNVETDRNNCGM
Sbjct: 61  KGPDCCNRKCVNVETDRNNCGM 82

[Close]

BLAST of CsGy1G010270 vs. TrEMBL
Match: tr|A0A1S3B2E0|A0A1S3B2E0_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485051 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSL-DDETFDQLSPVEETKNSPSGSV 60
           MK SK L   V  I  SHY +HA+ VE ++KEN T+L DDE  + L+P+E+ ++SP G  
Sbjct: 1   MKLSKLLLFLVLAITFSHYASHAAEVETNSKENATNLSDDEVSNHLAPIED-EDSPMGLA 60

Query: 61  RGLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 109
           R LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  RRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 109

[Close]

BLAST of CsGy1G010270 vs. TrEMBL
Match: tr|A0A0A0LWX5|A0A0A0LWX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058155 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSL-DDETFDQLSPVEETKNSPSGSV 60
           MK  K     V  II SHY +HA+ VE ++KEN T+L DDE  + L+ +E+ ++SP G  
Sbjct: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIED-EDSPLGLA 60

Query: 61  RGLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 109
           R LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  RRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 109

[Close]

BLAST of CsGy1G010270 vs. TrEMBL
Match: tr|A0A067JDB4|A0A067JDB4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21184 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 14  IIVSHYVAHASIVEMSNKENVTSLDDETFDQLS--PVEETKNSPSGSVRGLLFNF--ESL 73
           ++V+  +A A+I   S +E+    +D+T D+ S  P  E + +   S+RG+   F  ++ 
Sbjct: 8   LLVAMLMAFAAIALSSQEESFVDDNDDTLDENSDIPWPENQQTTPTSLRGITNRFLAQAS 67

Query: 74  QKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 109
           ++ +TC+ YPRVCRAKGS GPDCC +KCVNV TD+ NCG
Sbjct: 68  REAMTCDNYPRVCRAKGSPGPDCCKKKCVNVATDKTNCG 106

The following BLAST results are available for this feature:

BLAST of CsGy1G010270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145195.1	1.1e-55	100.00	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus]	[more]
XP_008440707.1	1.7e-45	88.07	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]
KGN64480.1	2.2e-40	100.00	hypothetical protein Csa_1G058150 [Cucumis sativus]	[more]
XP_008440721.1	3.6e-27	61.82	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]
XP_004145194.1	1.5e-25	60.00	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64481.1 hy...	[more]

BLAST of CsGy1G010270 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11925.1	1.1e-06	52.78	Stigma-specific Stig1 family protein	[more]
AT4G26880.1	2.4e-04	44.74	Stigma-specific Stig1 family protein	[more]

BLAST of CsGy1G010270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B1R3\|A0A1S3B1R3_CUCME	1.1e-45	88.07	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485044 PE=...	[more]
tr\|A0A0A0LRD7\|A0A0A0LRD7_CUCSA	1.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058150 PE=4 SV=1	[more]
tr\|A0A1S3B2E0\|A0A1S3B2E0_CUCME	2.4e-27	61.82	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485051 PE=...	[more]
tr\|A0A0A0LWX5\|A0A0A0LWX5_CUCSA	1.0e-25	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058155 PE=4 SV=1	[more]
tr\|A0A067JDB4\|A0A067JDB4_JATCU	1.2e-13	43.43	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21184 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006969	Stig1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010270.1	CsGy1G010270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006969	Stigma-specific protein Stig1	PFAM	PF04885	Stig1	coord: 30..156 e-value: 1.7E-40 score: 138.6
IPR006969	Stigma-specific protein Stig1	PANTHER	PTHR33227	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	PANTHER	PTHR33227:SF13	SUBFAMILY NOT NAMED	coord: 1..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010270	Cla019349	Watermelon (97103) v1	cgybwmB010
CsGy1G010270	Csa1G058150	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010270	MELO3C002423	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010270	MELO3C002433	Melon (DHL92) v3.5.1	cgybmeB034
CsGy1G010270	ClCG03G004340	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010270	CSPI01G10250	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010270	CmaCh13G007580	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G010270	CmaCh18G002750	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010270	CmoCh18G002560	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010270	CmoCh13G007890	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G010270	Lsi02G005640	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010270	Cp4.1LG20g03410	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G010270	Cp4.1LG09g09220	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010270	MELO3C002423.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010270	CsaV3_1G010310	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010270	Cla97C03G055530	Watermelon (97103) v2	cgybwmbB032
CsGy1G010270	Bhi08G001470	Wax gourd	cgybwgoB030
CsGy1G010270	Carg07559	Silver-seed gourd	carcgybB0992
CsGy1G010270	Carg06837	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010270	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010270	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010270	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010270	Silver-seed gourd	carcgybB0989