Carg07559 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07559
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Stigma-specific Stig1 family protein
Location	Cucurbita_argyrosperma_scaffold_024 : 298851 .. 299270 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGTTTTGTAAGGCTTTTGTTCGTGGTGGCCTTGGCCTTGGCCTTGGCCTTGTTAGCGCCTGTTGCCATGGCTCATGCAGCCAAAGAAGATTTGAAGGTTGCATCGCTGTGGGGGAGGGGCGGGTTCTTCTCTTATCGGTATAGGCCTTACCAAGCGGCGGTGACATGCGATAGGAGTATCAAGGTGTGCCGTGCCAAGGGCAGCCGTGGGCGCAATTGCTGCAAGAAAATGTGCGTGGATTTGAAGACGGATAGATACAATTGCGGGAAGTGTGGGAAGAAATGTAAGTACTCGGAGATATGTTGTAAAGGGAAGTGTGTGAATCCAATGTTTAATAGGAACAATTGTGGCGGCTGCAATAATAAGTGTAGTAGAGGAAGCTCGTGCGTTTATGGGATGTGCGGCTACGCGTAA

mRNA sequence

ATGAGGAGTTTTGTAAGGCTTTTGTTCGTGGTGGCCTTGGCCTTGGCCTTGGCCTTGTTAGCGCCTGTTGCCATGGCTCATGCAGCCAAAGAAGATTTGAAGGTTGCATCGCTGTGGGGGAGGGGCGGGTTCTTCTCTTATCGGTATAGGCCTTACCAAGCGGCGGTGACATGCGATAGGAGTATCAAGGTGTGCCGTGCCAAGGGCAGCCGTGGGCGCAATTGCTGCAAGAAAATGTGCGTGGATTTGAAGACGGATAGATACAATTGCGGGAAGTGTGGGAAGAAATGTAAGTACTCGGAGATATGTTGTAAAGGGAAGTGTGTGAATCCAATGTTTAATAGGAACAATTGTGGCGGCTGCAATAATAAGTGTAGTAGAGGAAGCTCGTGCGTTTATGGGATGTGCGGCTACGCGTAA

Coding sequence (CDS)

ATGAGGAGTTTTGTAAGGCTTTTGTTCGTGGTGGCCTTGGCCTTGGCCTTGGCCTTGTTAGCGCCTGTTGCCATGGCTCATGCAGCCAAAGAAGATTTGAAGGTTGCATCGCTGTGGGGGAGGGGCGGGTTCTTCTCTTATCGGTATAGGCCTTACCAAGCGGCGGTGACATGCGATAGGAGTATCAAGGTGTGCCGTGCCAAGGGCAGCCGTGGGCGCAATTGCTGCAAGAAAATGTGCGTGGATTTGAAGACGGATAGATACAATTGCGGGAAGTGTGGGAAGAAATGTAAGTACTCGGAGATATGTTGTAAAGGGAAGTGTGTGAATCCAATGTTTAATAGGAACAATTGTGGCGGCTGCAATAATAAGTGTAGTAGAGGAAGCTCGTGCGTTTATGGGATGTGCGGCTACGCGTAA

Protein sequence

MRSFVRLLFVVALALALALLAPVAMAHAAKEDLKVASLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGKCGKKCKYSEICCKGKCVNPMFNRNNCGGCNNKCSRGSSCVYGMCGYA

Homology

[Close]

BLAST of Carg07559 vs. NCBI nr
Match: XP_023520197.1 (stigma-specific STIG1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 3.7e-39
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MRSFVRLLFVVALALALALLAPVAMAHAAKEDLKVASLWGRGGFFSYRYRPYQAAVTCDR 60
          MRSFVRLLFVV  ALALALLAPVAMA AAKE+LKVAS+WGRGGFFSYRYRPYQAAVTCDR
Sbjct: 1  MRSFVRLLFVV--ALALALLAPVAMARAAKEELKVASVWGRGGFFSYRYRPYQAAVTCDR 60

Query: 61 SIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          SIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK
Sbjct: 61 SIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 90

[Close]

BLAST of Carg07559 vs. NCBI nr
Match: XP_022924144.1 (stigma-specific STIG1-like protein 1 [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 8.8e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 25 MAHAAKEDLKVASLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLK 84
          MAHAAKEDLKVASLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLK
Sbjct: 1  MAHAAKEDLKVASLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLK 60

Query: 85 TDRYNCGK 93
          TDRYNCGK
Sbjct: 61 TDRYNCGK 68

[Close]

BLAST of Carg07559 vs. NCBI nr
Match: XP_023001320.1 (stigma-specific STIG1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 25 MAHAAKEDLKVASLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLK 84
          MAHAAKEDLKV S+WGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKK CVDLK
Sbjct: 1  MAHAAKEDLKVTSVWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKRCVDLK 60

Query: 85 TDRYNCGK 93
          TDRYNCGK
Sbjct: 61 TDRYNCGK 68

[Close]

BLAST of Carg07559 vs. NCBI nr
Match: XP_011652551.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64492.1 hypothetical protein Csa_1G059710 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MRSFVRLLFVVALALALALLAPVAMAHAAKED-LKVASLWGRGGFFSYRYRPYQAAVTCD 60
          M  FV+L FVV L  +L L +  A  H   ED + + SL GR GFFSY++RP+QAA+TCD
Sbjct: 1  MMCFVKLFFVVVLFTSL-LSSHAAQEHEKMEDVVTLTSLRGRRGFFSYKFRPFQAAMTCD 60

Query: 61 RSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          R+IKVCRA+GS GRNCC+K CVDLK DRYNCG+
Sbjct: 61 RNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGR 92

[Close]

BLAST of Carg07559 vs. NCBI nr
Match: XP_008440806.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-19
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MRSFVRLLFVVALALALALLAPVAMAHAAKED-LKVASLWGRGGFFSYRYRPYQAAVTCD 60
          M  FV+L FVV L  +L   +  +  H   ED + + SL GR GFFSY+++P+QAA+TCD
Sbjct: 1  MMCFVKLFFVVVLFTSL-FSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCD 60

Query: 61 RSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          R+IKVCRA+GS GRNCC+K CVDLK DRYNCG+
Sbjct: 61 RNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGR 92

[Close]

BLAST of Carg07559 vs. TAIR10
Match: AT1G11925.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 54 AAVTCDRSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          A +TCD+S KVCR KGS GRNCC+K CVDL+T++ NCG+
Sbjct: 55 ATLTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGR 93

[Close]

BLAST of Carg07559 vs. TrEMBL
Match: tr|A0A0A0LUQ5|A0A0A0LUQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059710 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MRSFVRLLFVVALALALALLAPVAMAHAAKED-LKVASLWGRGGFFSYRYRPYQAAVTCD 60
          M  FV+L FVV L  +L L +  A  H   ED + + SL GR GFFSY++RP+QAA+TCD
Sbjct: 1  MMCFVKLFFVVVLFTSL-LSSHAAQEHEKMEDVVTLTSLRGRRGFFSYKFRPFQAAMTCD 60

Query: 61 RSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          R+IKVCRA+GS GRNCC+K CVDLK DRYNCG+
Sbjct: 61 RNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGR 92

[Close]

BLAST of Carg07559 vs. TrEMBL
Match: tr|A0A1S3B211|A0A1S3B211_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485113 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MRSFVRLLFVVALALALALLAPVAMAHAAKED-LKVASLWGRGGFFSYRYRPYQAAVTCD 60
          M  FV+L FVV L  +L   +  +  H   ED + + SL GR GFFSY+++P+QAA+TCD
Sbjct: 1  MMCFVKLFFVVVLFTSL-FSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCD 60

Query: 61 RSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          R+IKVCRA+GS GRNCC+K CVDLK DRYNCG+
Sbjct: 61 RNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGR 92

[Close]

BLAST of Carg07559 vs. TrEMBL
Match: tr|A0A061GFX6|A0A061GFX6_THECC (Stigma-specific Stig1 family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_030272 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 5   VRLLFVVALALALALLAPVAMAHAAKE----------------DLKVASLWGRGGFFSYR 64
           ++L F++A+ +AL  +A  A    +KE                D    S+ G G F +  
Sbjct: 4   LKLFFMLAMVMALGAIALSASTPPSKEEPFLNNGDDKNATETSDRVPTSIRGAGRFLA-- 63

Query: 65  YRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
               +AA+TCD++ KVCR KGS+G +CC K CVDLKTDR+NCGK
Sbjct: 64  QSSSRAALTCDKNPKVCRTKGSQGPSCCSKKCVDLKTDRFNCGK 105

[Close]

BLAST of Carg07559 vs. TrEMBL
Match: tr|D7KN71|D7KN71_ARALL (Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_471343 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 50 RPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
          +P  A +TCD+S KVCR KGS GRNCC+K CVDL+T++ NCG+
Sbjct: 41 KPIGATMTCDKSSKVCRLKGSPGRNCCRKRCVDLRTNKLNCGR 83

[Close]

BLAST of Carg07559 vs. TrEMBL
Match: tr|A0A2P6Q2G4|A0A2P6Q2G4_ROSCH (Putative stigma-specific protein Stig1 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0002451 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 37  SLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 93
           SL G   F + R      A TCD++ KVC+A GS GR+CCKK CVDLKTDR NCGK
Sbjct: 60  SLRGASRFLATR----AVATTCDKNPKVCKAAGSAGRDCCKKKCVDLKTDRVNCGK 111

The following BLAST results are available for this feature:

BLAST of Carg07559 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520197.1	3.7e-39	94.57	stigma-specific STIG1-like protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022924144.1	8.8e-33	100.00	stigma-specific STIG1-like protein 1 [Cucurbita moschata]	[more]
XP_023001320.1	2.8e-31	95.59	stigma-specific STIG1-like protein 1 [Cucurbita maxima]	[more]
XP_011652551.1	2.2e-20	61.29	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64492.1 hy...	[more]
XP_008440806.1	5.5e-19	58.06	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]

BLAST of Carg07559 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11925.1	3.0e-11	66.67	Stigma-specific Stig1 family protein	[more]

BLAST of Carg07559 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07559 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUQ5\|A0A0A0LUQ5_CUCSA	1.5e-20	61.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059710 PE=4 SV=1	[more]
tr\|A0A1S3B211\|A0A1S3B211_CUCME	3.7e-19	58.06	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485113 PE=...	[more]
tr\|A0A061GFX6\|A0A061GFX6_THECC	1.0e-08	40.38	Stigma-specific Stig1 family protein, putative OS=Theobroma cacao OX=3641 GN=TCM...	[more]
tr\|D7KN71\|D7KN71_ARALL	2.2e-08	62.79	Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 ...	[more]
tr\|A0A2P6Q2G4\|A0A2P6Q2G4_ROSCH	2.9e-08	58.93	Putative stigma-specific protein Stig1 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Ch...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006969	Stig1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07559-RA	Carg07559-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006969	Stigma-specific protein Stig1	PFAM	PF04885	Stig1	coord: 31..139 e-value: 2.1E-37 score: 128.6
IPR006969	Stigma-specific protein Stig1	PANTHER	PTHR33227	FAMILY NOT NAMED	coord: 6..139
None	No IPR available	PANTHER	PTHR33227:SF4	F12F1.21 PROTEIN	coord: 6..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07559	Cla019356	Watermelon (97103) v1	carwmB1004
Carg07559	Csa1G059710	Cucumber (Chinese Long) v2	carcuB1020
Carg07559	MELO3C002433	Melon (DHL92) v3.5.1	carmeB0977
Carg07559	ClCG03G004450	Watermelon (Charleston Gray)	carwcgB0981
Carg07559	CSPI01G10250	Wild cucumber (PI 183967)	carcpiB1044
Carg07559	Cucsa.085560	Cucumber (Gy14) v1	carcgyB1119
Carg07559	CmaCh18G002750	Cucurbita maxima (Rimu)	carcmaB1394
Carg07559	CmaCh13G007580	Cucurbita maxima (Rimu)	carcmaB1393
Carg07559	CmoCh18G002560	Cucurbita moschata (Rifu)	carcmoB1352
Carg07559	CmoCh13G007890	Cucurbita moschata (Rifu)	carcmoB1349
Carg07559	Lsi02G005710	Bottle gourd (USVL1VR-Ls)	carlsiB920
Carg07559	Cp4.1LG09g09220	Cucurbita pepo (Zucchini)	carcpeB1395
Carg07559	Cp4.1LG20g03410	Cucurbita pepo (Zucchini)	carcpeB1401
Carg07559	CsGy1G010270	Cucumber (Gy14) v2	carcgybB0992
Carg07559	MELO3C002433.2	Melon (DHL92) v3.6.1	carmedB0987
Carg07559	CsaV3_1G010450	Cucumber (Chinese Long) v3	carcucB1049
Carg07559	Cla97C03G055610	Watermelon (97103) v2	carwmbB1061
Carg07559	Bhi08G001480	Wax gourd	carwgoB1182

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07559	Carg06837	Silver-seed gourd	carcarB483

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07559	Silver-seed gourd	carcarB481
Carg07559	Cucurbita maxima (Rimu)	carcmaB1395
Carg07559	Cucurbita moschata (Rifu)	carcmoB1350
Carg07559	Cucurbita pepo (Zucchini)	carcpeB1396