MELO3C002433.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C002433.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionStigma-specific Stig1 family protein, putative
Locationchr12 : 24045956 .. 24046595 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCATTCTTCTGATATCTCTTGCATTCCTTCATATCCTTTTCCCTCTAACATTACCTATTACTCAATTCTCATTCCCAAGAAAAAAAAATGATGTGTTTTGTAAAGCTATTCTTTGTTGTGGTCTTGTTTACATCTCTTTTCTCATCTCATGCATCTAAAGAGCATGATAAAATGGAAGATGTAGTTATGCTAACGTCGCTTCGAGGGAGGAGGGGCTTCTTCTCTTACAAGTTTAAGCCTTTTCAAGCAGCAATGACATGTGATAGAAATATAAAAGTGTGTCGAGCTGAAGGCAGCCCTGGCCGCAATTGTTGCCAGAAGAAGTGTGTGGATTTGAAAAGAGATAGATATAACTGTGGGAGGTGTGGCAGGAAATGCAAGTACTCGGAGGTATGCTGTAAAGGGAAGTGTGTGAATACAATGTTTAATAGAAAGCATTGTGGAGGTTGCAACAATAAGTGCAATAGAGGAAGTTTGTGTGTCTATGGCATGTGTGGTTATGCCTAAATGATCATAGGGGAACACAAAACATGATCATTAATTGTGTGATTGTATTCTGCGTTGATTATTCTTTATTGCTTTGTTTTATATCATTCAAGATATATACATGATTATTAAGATTCTTGGGATTTTAGTG

mRNA sequence

AAACCATTCTTCTGATATCTCTTGCATTCCTTCATATCCTTTTCCCTCTAACATTACCTATTACTCAATTCTCATTCCCAAGAAAAAAAAATGATGTGTTTTGTAAAGCTATTCTTTGTTGTGGTCTTGTTTACATCTCTTTTCTCATCTCATGCATCTAAAGAGCATGATAAAATGGAAGATGTAGTTATGCTAACGTCGCTTCGAGGGAGGAGGGGCTTCTTCTCTTACAAGTTTAAGCCTTTTCAAGCAGCAATGACATGTGATAGAAATATAAAAGTGTGTCGAGCTGAAGGCAGCCCTGGCCGCAATTGTTGCCAGAAGAAGTGTGTGGATTTGAAAAGAGATAGATATAACTGTGGGAGGTGTGGCAGGAAATGCAAGTACTCGGAGGTATGCTGTAAAGGGAAGTGTGTGAATACAATGTTTAATAGAAAGCATTGTGGAGGTTGCAACAATAAGTGCAATAGAGGAAGTTTGTGTGTCTATGGCATGTGTGGTTATGCCTAAATGATCATAGGGGAACACAAAACATGATCATTAATTGTGTGATTGTATTCTGCGTTGATTATTCTTTATTGCTTTGTTTTATATCATTCAAGATATATACATGATTATTAAGATTCTTGGGATTTTAGTG

Coding sequence (CDS)

ATGATGTGTTTTGTAAAGCTATTCTTTGTTGTGGTCTTGTTTACATCTCTTTTCTCATCTCATGCATCTAAAGAGCATGATAAAATGGAAGATGTAGTTATGCTAACGTCGCTTCGAGGGAGGAGGGGCTTCTTCTCTTACAAGTTTAAGCCTTTTCAAGCAGCAATGACATGTGATAGAAATATAAAAGTGTGTCGAGCTGAAGGCAGCCCTGGCCGCAATTGTTGCCAGAAGAAGTGTGTGGATTTGAAAAGAGATAGATATAACTGTGGGAGGTGTGGCAGGAAATGCAAGTACTCGGAGGTATGCTGTAAAGGGAAGTGTGTGAATACAATGTTTAATAGAAAGCATTGTGGAGGTTGCAACAATAAGTGCAATAGAGGAAGTTTGTGTGTCTATGGCATGTGTGGTTATGCCTAA

Protein sequence

MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDRNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKYSEVCCKGKCVNTMFNRKHCGGCNNKCNRGSLCVYGMCGYA
Homology
[Close]
BLAST of MELO3C002433.2 vs. NCBI nr
Match: XP_008440806.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60
           MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR
Sbjct: 1   MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60

Query: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 100
           NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY
Sbjct: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 99

[Close]
BLAST of MELO3C002433.2 vs. NCBI nr
Match: XP_011652551.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64492.1 hypothetical protein Csa_1G059710 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60
           MMCFVKLFFVVVLFTSL SSHA++EH+KMEDVV LTSLRGRRGFFSYKF+PFQAAMTCDR
Sbjct: 1   MMCFVKLFFVVVLFTSLLSSHAAQEHEKMEDVVTLTSLRGRRGFFSYKFRPFQAAMTCDR 60

Query: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 100
           NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCG+KCKY
Sbjct: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGKKCKY 99

[Close]
BLAST of MELO3C002433.2 vs. NCBI nr
Match: XP_023520197.1 (stigma-specific STIG1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 5.0e-20
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 0 

Query: 1  MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60
          M  FV+L FVV L  +L +  A     K E  + + S+ GR GFFSY+++P+QAA+TCDR
Sbjct: 1  MRSFVRLLFVVALALALLAPVAMARAAKEE--LKVASVWGRGGFFSYRYRPYQAAVTCDR 60

Query: 61 NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGR 93
          +IKVCRA+GS GRNCC+K CVDLK DRYNCG+
Sbjct: 61 SIKVCRAKGSRGRNCCKKMCVDLKTDRYNCGK 90

[Close]
BLAST of MELO3C002433.2 vs. NCBI nr
Match: XP_023001320.1 (stigma-specific STIG1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 20 SHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDRNIKVCRAEGSPGRNCCQKK 79
          +HA+KE  K      +TS+ GR GFFSY+++P+QAA+TCDR+IKVCRA+GS GRNCC+K+
Sbjct: 2  AHAAKEDLK------VTSVWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKR 61

Query: 80 CVDLKRDRYNCGR 93
          CVDLK DRYNCG+
Sbjct: 62 CVDLKTDRYNCGK 68

[Close]
BLAST of MELO3C002433.2 vs. NCBI nr
Match: XP_022924144.1 (stigma-specific STIG1-like protein 1 [Cucurbita moschata])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 0 

Query: 20 SHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDRNIKVCRAEGSPGRNCCQKK 79
          +HA+KE  K      + SL GR GFFSY+++P+QAA+TCDR+IKVCRA+GS GRNCC+K 
Sbjct: 2  AHAAKEDLK------VASLWGRGGFFSYRYRPYQAAVTCDRSIKVCRAKGSRGRNCCKKM 61

Query: 80 CVDLKRDRYNCGR 93
          CVDLK DRYNCG+
Sbjct: 62 CVDLKTDRYNCGK 68

[Close]
BLAST of MELO3C002433.2 vs. TAIR10
Match: AT1G11925.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 50  KPFQAAMTCDRNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 100
           K   A +TCD++ KVCR +GSPGRNCC+KKCVDL+ ++ NCGRCG+ C+Y
Sbjct: 51  KHLGATLTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGRCGKSCQY 100

[Close]
BLAST of MELO3C002433.2 vs. TAIR10
Match: AT1G53130.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 20/78 (25.64%), Postives = 37/78 (47.44%), Query Frame = 0 

Query: 27  DKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCD-RNIKVCRA----EGSPGRNCCQKKCV 86
           D+   ++   ++  +       +K  +  M C   +  +C      +G+   +CC+K C 
Sbjct: 51  DETPSILSNVTISSKTRLLVSHYKKIKKGMRCHVESYNICNGVKANKGTSLLHCCKKHCR 110

Query: 87  DLKRDRYNCGRCGRKCKY 100
           ++  DR NCGRCG KC +
Sbjct: 111 NVLGDRNNCGRCGHKCGF 128

[Close]
BLAST of MELO3C002433.2 vs. TrEMBL
Match: tr|A0A1S3B211|A0A1S3B211_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485113 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.6e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60
           MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR
Sbjct: 1   MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60

Query: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 100
           NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY
Sbjct: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 99

[Close]
BLAST of MELO3C002433.2 vs. TrEMBL
Match: tr|A0A0A0LUQ5|A0A0A0LUQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059710 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.3e-48
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MMCFVKLFFVVVLFTSLFSSHASKEHDKMEDVVMLTSLRGRRGFFSYKFKPFQAAMTCDR 60
           MMCFVKLFFVVVLFTSL SSHA++EH+KMEDVV LTSLRGRRGFFSYKF+PFQAAMTCDR
Sbjct: 1   MMCFVKLFFVVVLFTSLLSSHAAQEHEKMEDVVTLTSLRGRRGFFSYKFRPFQAAMTCDR 60

Query: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGRKCKY 100
           NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCG+KCKY
Sbjct: 61  NIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRCGKKCKY 99

[Close]
BLAST of MELO3C002433.2 vs. TrEMBL
Match: tr|V4VUA9|V4VUA9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023606mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 34  MLTSLRGRRGFFSYKFKPFQAAMTCDRNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRC 93
           +LTSLRGRRGFF       ++AM CD+  +VCRA GSPG +CC+K+CV++ +DR+NCG+C
Sbjct: 52  LLTSLRGRRGFFP------RSAMKCDKYPRVCRARGSPGPDCCKKRCVNVMKDRFNCGKC 111

Query: 94  GRKCKY 100
           GR CKY
Sbjct: 112 GRNCKY 111

[Close]
BLAST of MELO3C002433.2 vs. TrEMBL
Match: tr|A0A2H5NIY3|A0A2H5NIY3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_049270 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 34  MLTSLRGRRGFFSYKFKPFQAAMTCDRNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRC 93
           +LTSLRGRRGFF       ++AM CD+  +VCRA GSPG +CC+K+CV++ +DR+NCG+C
Sbjct: 52  LLTSLRGRRGFFP------RSAMKCDKYPRVCRARGSPGPDCCKKRCVNVMKDRFNCGKC 111

Query: 94  GRKCKY 100
           GR CKY
Sbjct: 112 GRNCKY 111

[Close]
BLAST of MELO3C002433.2 vs. TrEMBL
Match: tr|A0A067FII5|A0A067FII5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044138mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 34  MLTSLRGRRGFFSYKFKPFQAAMTCDRNIKVCRAEGSPGRNCCQKKCVDLKRDRYNCGRC 93
           +LTSLRGRRGFF       ++AM CD+  +VCRA GSPG +CC+K+CV++ +DR+NCG+C
Sbjct: 52  LLTSLRGRRGFFP------RSAMKCDKYPRVCRARGSPGPDCCKKRCVNVMKDRFNCGKC 111

Query: 94  GRKCKY 100
           GR CKY
Sbjct: 112 GRNCKY 111

The following BLAST results are available for this feature:
BLAST of MELO3C002433.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008440806.15.5e-51100.00PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo][more]
XP_011652551.11.3e-4792.93PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64492.1 hy... [more]
XP_023520197.15.0e-2057.61stigma-specific STIG1-like protein 1 [Cucurbita pepo subsp. pepo][more]
XP_023001320.11.9e-1964.38stigma-specific STIG1-like protein 1 [Cucurbita maxima][more]
XP_022924144.17.2e-1964.38stigma-specific STIG1-like protein 1 [Cucurbita moschata][more]
BLAST of MELO3C002433.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11925.11.5e-1562.00Stigma-specific Stig1 family protein[more]
AT1G53130.13.6e-0425.64Stigma-specific Stig1 family protein[more]
BLAST of MELO3C002433.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C002433.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B211|A0A1S3B211_CUCME3.6e-51100.00stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485113 PE=... [more]
tr|A0A0A0LUQ5|A0A0A0LUQ5_CUCSA8.3e-4892.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059710 PE=4 SV=1[more]
tr|V4VUA9|V4VUA9_9ROSI2.4e-1559.09Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023606mg PE=4 ... [more]
tr|A0A2H5NIY3|A0A2H5NIY3_CITUN2.4e-1559.09Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_049270 PE=4 SV=1[more]
tr|A0A067FII5|A0A067FII5_CITSI2.4e-1559.09Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044138mg PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006969Stig1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002433.2.1MELO3C002433.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006969Stigma-specific protein Stig1PFAMPF04885Stig1coord: 25..139
e-value: 2.4E-39
score: 134.9
IPR006969Stigma-specific protein Stig1PANTHERPTHR33227FAMILY NOT NAMEDcoord: 5..139
NoneNo IPR availablePANTHERPTHR33227:SF4F12F1.21 PROTEINcoord: 5..139

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C002433.2Csa1G059710Cucumber (Chinese Long) v2cumedB022
MELO3C002433.2Cucsa.085560Cucumber (Gy14) v1cgymedB094
MELO3C002433.2Lsi02G005640Bottle gourd (USVL1VR-Ls)lsimedB187
MELO3C002433.2Cla019349Watermelon (97103) v1medwmB145
MELO3C002433.2ClCG03G004450Watermelon (Charleston Gray)medwcgB143
MELO3C002433.2Cla97C03G055610Watermelon (97103) v2medwmbB145
MELO3C002433.2Bhi08G001480Wax gourdmedwgoB173
MELO3C002433.2Carg07559Silver-seed gourdcarmedB0987
MELO3C002433.2Carg06837Silver-seed gourdcarmedB0504
MELO3C002433.2CsaV3_1G010310Cucumber (Chinese Long) v3cucmedB019
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002433.2Cucumber (Gy14) v2cgybmedB020
MELO3C002433.2Cucumber (Gy14) v2cgybmedB397
MELO3C002433.2Cucumber (Gy14) v1cgymedB019
MELO3C002433.2Cucumber (Gy14) v1cgymedB216
MELO3C002433.2Cucurbita maxima (Rimu)cmamedB213
MELO3C002433.2Cucurbita maxima (Rimu)cmamedB413
MELO3C002433.2Cucurbita maxima (Rimu)cmamedB676
MELO3C002433.2Cucurbita maxima (Rimu)cmamedB883
MELO3C002433.2Cucurbita moschata (Rifu)cmomedB201
MELO3C002433.2Cucurbita moschata (Rifu)cmomedB408
MELO3C002433.2Cucurbita moschata (Rifu)cmomedB667
MELO3C002433.2Cucurbita moschata (Rifu)cmomedB875
MELO3C002433.2Cucurbita pepo (Zucchini)cpemedB031
MELO3C002433.2Cucurbita pepo (Zucchini)cpemedB063
MELO3C002433.2Cucurbita pepo (Zucchini)cpemedB517
MELO3C002433.2Cucurbita pepo (Zucchini)cpemedB559
MELO3C002433.2Cucumber (Chinese Long) v2cumedB021
MELO3C002433.2Wild cucumber (PI 183967)cpimedB020
MELO3C002433.2Wild cucumber (PI 183967)cpimedB023
MELO3C002433.2Wild cucumber (PI 183967)cpimedB447
MELO3C002433.2Cucumber (Chinese Long) v2cumedB439
MELO3C002433.2Melon (DHL92) v3.6.1medmedB074
MELO3C002433.2Bottle gourd (USVL1VR-Ls)lsimedB138
MELO3C002433.2Bottle gourd (USVL1VR-Ls)lsimedB189
MELO3C002433.2Watermelon (Charleston Gray)medwcgB131
MELO3C002433.2Watermelon (Charleston Gray)medwcgB144
MELO3C002433.2Watermelon (97103) v1medwmB164
MELO3C002433.2Silver-seed gourdcarmedB0649
MELO3C002433.2Silver-seed gourdcarmedB0921
MELO3C002433.2Cucumber (Chinese Long) v3cucmedB022
MELO3C002433.2Cucumber (Chinese Long) v3cucmedB032
MELO3C002433.2Cucumber (Chinese Long) v3cucmedB455
MELO3C002433.2Watermelon (97103) v2medwmbB130
MELO3C002433.2Watermelon (97103) v2medwmbB144
MELO3C002433.2Wax gourdmedwgoB180