CsGy1G010110 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 6280723 .. 6283072 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATGGGCCAACCGTCACTATGTAAGCCTAGCCCATTTCTTATCTTTAGCCCAGCTCTTTAGCTTTGGGAGCCCTAATTTCACACTGCCTTTGATCGGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGATTCAGTCTTCTTGTGATGTTTTGTTTGTAGTCAATATTGGGTAAGATCAGTGGTTTGAGTGCACTATTTGATTTGTAGCAGTATAGGTTATCTGGTTATCTGTTTTGGTTGTGAATTGTGGCATTTCTCCTTTGATTTGTGATTATCGAATTCTTCTTATCTGATAGTGTAGAAAAAATGGTTCTTCTATGAATTTGAACATTGGTGTTTTTTTCGTAGAGGAATTTGGAGCACTTATTAGTTCATTATAAACATAGTAATATTTGGCTGATATGATATGTCTGTGAGCTCACGACTAACTATAAAGTTGTATAGATAGCTTAAAATAAGCATGCTTAAAGAGTGTTGAAGGCATATGTCAAAATTTTCTGAGTGAAGTTTCTCTCTTCATTTTTCTGGATAATTTGTTTTGGAGTTTTTATTCGTAACTTAAGGCCTAAAAGAAAACTAATTACTTGTTTTCTTGATGCCCCAAGCACATTTTTTTGAATTAAACCCATCTAGGGGCGTGTGTTCGAATTTTTGGTTAAGCTTGATTAAGAAAAGCCTTAAGTTGGGGGTTTAGGGACCTGGGGTGGGCGTGGACTTTGAGAAAAAGAAAAAAGAAATACTTATCTTCTTGACCGGTATCTAGTATATAGCTCTTTGTTCTTAATAGGTGTTTAATGTTGATTAGTTTGTTGACTTAGTTTTCTTTCAAATTCAGGCCACTGAATTGTCCTTGCGAAGTTAAAAAATGGGTTCGATTTAAGTAGATTGCAACTTCAGGGGGAAAGTTAATTTGGTAACTTAAGAAATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGAATGAATGTATGCTTTTAGTCATCCACTGTCTCCATGTACTTTGTTCTTTGCTTCGTTAGACTCGATGTTTTTTTATAATAACATCTTGCATTTTTCAGTGTCTTGGTTTTCTAGCAAGATAGCATTTACCCATCTTTAAACGAATGCAAGAGGAACGCAACATCTTCTGTTCCATTTCTGTCTTAATAGTCAAACGAAACGACACCTGTATTGCTTCTTTTTCCCTACTTTTTTAAGGGTCGTTTTTTCAGAACTCAAGATGGCTGAAGGTTTCATTTTGAAATATTTGGATTAGATTGTGTTTGTTAGGCATTTTCTTTTAATTTTGTTAAAAGGTAGTGAGGATGTTAATGGGATTTCTTCTTCTTTTAAACATCTATTCAATTTTTGGCATAGAACTTAGGTTTCATACAAATATTATGTTAGGAGAAATTCTCAATGAAAACATAAAAAGAGTAATCTCTAAAGACTATTGGAAAGGGTTTATTAAATAAAC

mRNA sequence

ATGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGCCACTGAATTGTCCTTGCGAAGTTAAAAAATGGGTTCGATTTAAGTAGATTGCAACTTCAGGGGGAAAGTTAATTTGGTAACTTAAGAAATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGAATGAATGTATGCTTTTAGTCATCCACTGTCTCCATGTACTTTGTTCTTTGCTTCGTTAGACTCGATGTTTTTTTATAATAACATCTTGCATTTTTCAGTGTCTTGGTTTTCTAGCAAGATAGCATTTACCCATCTTTAAACGAATGCAAGAGGAACGCAACATCTTCTGTTCCATTTCTGTCTTAATAGTCAAACGAAACGACACCTGTATTGCTTCTTTTTCCCTACTTTTTTAAGGGTCGTTTTTTCAGAACTCAAGATGGCTGAAGGTTTCATTTTGAAATATTTGGATTAGATTGTGTTTGTTAGGCATTTTCTTTTAATTTTGTTAAAAGGTAGTGAGGATGTTAATGGGATTTCTTCTTCTTTTAAACATCTATTCAATTTTTGGCATAGAACTTAGGTTTCATACAAATATTATGTTAGGAGAAATTCTCAATGAAAACATAAAAAGAGTAATCTCTAAAGACTATTGGAAAGGGTTTATTAAATAAAC

Coding sequence (CDS)

ATGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGCCACTGAATTGTCCTTGCGAAGTTAA

Protein sequence

MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLILVSQREFLCSLALCESATELSLRS

Homology

[Close]

BLAST of CsGy1G010110 vs. NCBI nr
Match: KGN64463.1 (hypothetical protein Csa_1G056990 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60
          MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL
Sbjct: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60

Query: 61 ILVSQREFLCSLALCES 78
          ILVSQREFLCSLALCES
Sbjct: 61 ILVSQREFLCSLALCES 77

[Close]

BLAST of CsGy1G010110 vs. TrEMBL
Match: tr|A0A0A0LRS3|A0A0A0LRS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056990 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60
          MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL
Sbjct: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60

Query: 61 ILVSQREFLCSLALCES 78
          ILVSQREFLCSLALCES
Sbjct: 61 ILVSQREFLCSLALCES 77

The following BLAST results are available for this feature:

BLAST of CsGy1G010110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64463.1	1.7e-34	100.00	hypothetical protein Csa_1G056990 [Cucumis sativus]	[more]

BLAST of CsGy1G010110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRS3\|A0A0A0LRS3_CUCSA	1.1e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056990 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010110.1	CsGy1G010110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010110	Csa1G056990	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010110	CSPI01G10080	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010110	CsaV3_1G010150	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010110	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010110	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010110	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010110	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010110	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010110	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010110	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010110	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010110	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010110	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010110	Watermelon (97103) v1	cgybwmB010
CsGy1G010110	Silver-seed gourd	carcgybB0500
CsGy1G010110	Silver-seed gourd	carcgybB0989
CsGy1G010110	Watermelon (97103) v2	cgybwmbB032
CsGy1G010110	Wax gourd	cgybwgoB023