CsGy1G010110.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G010110.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 6280723 .. 6283072 (+)
Sequence length1462
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATGGGCCAACCGTCACTATGTAAGCCTAGCCCATTTCTTATCTTTAGCCCAGCTCTTTAGCTTTGGGAGCCCTAATTTCACACTGCCTTTGATCGGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGATTCAGTCTTCTTGTGATGTTTTGTTTGTAGTCAATATTGGGTAAGATCAGTGGTTTGAGTGCACTATTTGATTTGTAGCAGTATAGGTTATCTGGTTATCTGTTTTGGTTGTGAATTGTGGCATTTCTCCTTTGATTTGTGATTATCGAATTCTTCTTATCTGATAGTGTAGAAAAAATGGTTCTTCTATGAATTTGAACATTGGTGTTTTTTTCGTAGAGGAATTTGGAGCACTTATTAGTTCATTATAAACATAGTAATATTTGGCTGATATGATATGTCTGTGAGCTCACGACTAACTATAAAGTTGTATAGATAGCTTAAAATAAGCATGCTTAAAGAGTGTTGAAGGCATATGTCAAAATTTTCTGAGTGAAGTTTCTCTCTTCATTTTTCTGGATAATTTGTTTTGGAGTTTTTATTCGTAACTTAAGGCCTAAAAGAAAACTAATTACTTGTTTTCTTGATGCCCCAAGCACATTTTTTTGAATTAAACCCATCTAGGGGCGTGTGTTCGAATTTTTGGTTAAGCTTGATTAAGAAAAGCCTTAAGTTGGGGGTTTAGGGACCTGGGGTGGGCGTGGACTTTGAGAAAAAGAAAAAAGAAATACTTATCTTCTTGACCGGTATCTAGTATATAGCTCTTTGTTCTTAATAGGTGTTTAATGTTGATTAGTTTGTTGACTTAGTTTTCTTTCAAATTCAGGCCACTGAATTGTCCTTGCGAAGTTAAAAAATGGGTTCGATTTAAGTAGATTGCAACTTCAGGGGGAAAGTTAATTTGGTAACTTAAGAAATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGAATGAATGTATGCTTTTAGTCATCCACTGTCTCCATGTACTTTGTTCTTTGCTTCGTTAGACTCGATGTTTTTTTATAATAACATCTTGCATTTTTCAGTGTCTTGGTTTTCTAGCAAGATAGCATTTACCCATCTTTAAACGAATGCAAGAGGAACGCAACATCTTCTGTTCCATTTCTGTCTTAATAGTCAAACGAAACGACACCTGTATTGCTTCTTTTTCCCTACTTTTTTAAGGGTCGTTTTTTCAGAACTCAAGATGGCTGAAGGTTTCATTTTGAAATATTTGGATTAGATTGTGTTTGTTAGGCATTTTCTTTTAATTTTGTTAAAAGGTAGTGAGGATGTTAATGGGATTTCTTCTTCTTTTAAACATCTATTCAATTTTTGGCATAGAACTTAGGTTTCATACAAATATTATGTTAGGAGAAATTCTCAATGAAAACATAAAAAGAGTAATCTCTAAAGACTATTGGAAAGGGTTTATTAAATAAAC

mRNA sequence

ATGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGCCACTGAATTGTCCTTGCGAAGTTAAAAAATGGGTTCGATTTAAGTAGATTGCAACTTCAGGGGGAAAGTTAATTTGGTAACTTAAGAAATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGAATGAATGTATGCTTTTAGTCATCCACTGTCTCCATGTACTTTGTTCTTTGCTTCGTTAGACTCGATGTTTTTTTATAATAACATCTTGCATTTTTCAGTGTCTTGGTTTTCTAGCAAGATAGCATTTACCCATCTTTAAACGAATGCAAGAGGAACGCAACATCTTCTGTTCCATTTCTGTCTTAATAGTCAAACGAAACGACACCTGTATTGCTTCTTTTTCCCTACTTTTTTAAGGGTCGTTTTTTCAGAACTCAAGATGGCTGAAGGTTTCATTTTGAAATATTTGGATTAGATTGTGTTTGTTAGGCATTTTCTTTTAATTTTGTTAAAAGGTAGTGAGGATGTTAATGGGATTTCTTCTTCTTTTAAACATCTATTCAATTTTTGGCATAGAACTTAGGTTTCATACAAATATTATGTTAGGAGAAATTCTCAATGAAAACATAAAAAGAGTAATCTCTAAAGACTATTGGAAAGGGTTTATTAAATAAAC

Coding sequence (CDS)

ATGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGCCACTGAATTGTCCTTGCGAAGTTAA

Protein sequence

MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLILVSQREFLCSLALCESATELSLRS
Homology
[Close]
BLAST of CsGy1G010110.1 vs. NCBI nr
Match: KGN64463.1 (hypothetical protein Csa_1G056990 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60
          MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL
Sbjct: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60

Query: 61 ILVSQREFLCSLALCES 78
          ILVSQREFLCSLALCES
Sbjct: 61 ILVSQREFLCSLALCES 77

[Close]
BLAST of CsGy1G010110.1 vs. TrEMBL
Match: tr|A0A0A0LRS3|A0A0A0LRS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056990 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60
          MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL
Sbjct: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60

Query: 61 ILVSQREFLCSLALCES 78
          ILVSQREFLCSLALCES
Sbjct: 61 ILVSQREFLCSLALCES 77

The following BLAST results are available for this feature:
BLAST of CsGy1G010110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64463.11.7e-34100.00hypothetical protein Csa_1G056990 [Cucumis sativus][more]
BLAST of CsGy1G010110.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G010110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G010110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRS3|A0A0A0LRS3_CUCSA1.1e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056990 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G010110CsGy1G010110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G010110.1CsGy1G010110.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G010110.1.exon.1CsGy1G010110.1.exon.1exon
CsGy1G010110.1.exon.2CsGy1G010110.1.exon.2exon
CsGy1G010110.1.exon.3CsGy1G010110.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G010110.1.CDS.1CsGy1G010110.1.CDS.1CDS
CsGy1G010110.1.CDS.2CsGy1G010110.1.CDS.2CDS
CsGy1G010110.1.CDS.3CsGy1G010110.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G010110.1.three_prime_UTR.1CsGy1G010110.1.three_prime_UTR.1three_prime_UTR