CSPI01G10080 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10080
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6297620 .. 6298077 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCACAAAATTTGTTGGGCTTTGGCCTTTTGGGGACTAAATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATTGGGCCAACCGTCACTATGTAAGCCTAGCCCATTTCTTATCTTTAGCCCAGCTCTTTAGCTTTGGGAGCCCTAATTTCACACTGCCTTTGATCGGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

mRNA sequence

ATGATTTCACAAAATTTGTTGGGCTTTGGCCTTTTGGGGACTAAATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATTGGGCCAACCGTCACTATTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

Coding sequence (CDS)

ATGATTTCACAAAATTTGTTGGGCTTTGGCCTTTTGGGGACTAAATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATTGGGCCAACCGTCACTATTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA
Homology
[Close]
BLAST of CSPI01G10080 vs. TrEMBL
Match: A0A0A0LRS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056990 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.6e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 44  YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 103
           YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL
Sbjct: 3   YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 62

Query: 104 VSQREFLCSLALCESVIRCIDL 126
           VSQREFLCSLALCESVIRCIDL
Sbjct: 63  VSQREFLCSLALCESVIRCIDL 84

[Close]
BLAST of CSPI01G10080 vs. NCBI nr
Match: gi|700209367|gb|KGN64463.1| (hypothetical protein Csa_1G056990 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 9.4e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 44  YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 103
           YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL
Sbjct: 3   YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 62

Query: 104 VSQREFLCSLALCESVIRCIDL 126
           VSQREFLCSLALCESVIRCIDL
Sbjct: 63  VSQREFLCSLALCESVIRCIDL 84

The following BLAST results are available for this feature:
BLAST of CSPI01G10080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRS3_CUCSA6.6e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056990 PE=4 SV=1[more]
BLAST of CSPI01G10080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209367|gb|KGN64463.1|9.4e-38100.00hypothetical protein Csa_1G056990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10080.1CSPI01G10080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G10080Csa1G056990Cucumber (Chinese Long) v2cpicuB000
CSPI01G10080CsaV3_1G010150Cucumber (Chinese Long) v3cpicucB001
CSPI01G10080CsGy1G010110Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10080Watermelon (97103) v2cpiwmbB032
CSPI01G10080Wax gourdcpiwgoB026
CSPI01G10080Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10080Cucumber (Gy14) v1cgycpiB192
CSPI01G10080Cucurbita maxima (Rimu)cmacpiB206
CSPI01G10080Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10080Cucurbita moschata (Rifu)cmocpiB193
CSPI01G10080Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10080Melon (DHL92) v3.5.1cpimeB024
CSPI01G10080Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10080Watermelon (97103) v1cpiwmB010
CSPI01G10080Cucurbita pepo (Zucchini)cpecpiB517
CSPI01G10080Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10080Melon (DHL92) v3.6.1cpimedB023
CSPI01G10080Silver-seed gourdcarcpiB0531
CSPI01G10080Silver-seed gourdcarcpiB1041