CSPI01G10080.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G10080.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6297620 .. 6298077 (+)
Sequence length378
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCACAAAATTTGTTGGGCTTTGGCCTTTTGGGGACTAAATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATTGGGCCAACCGTCACTATGTAAGCCTAGCCCATTTCTTATCTTTAGCCCAGCTCTTTAGCTTTGGGAGCCCTAATTTCACACTGCCTTTGATCGGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

mRNA sequence

ATGATTTCACAAAATTTGTTGGGCTTTGGCCTTTTGGGGACTAAATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATTGGGCCAACCGTCACTATTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

Coding sequence (CDS)

ATGATTTCACAAAATTTGTTGGGCTTTGGCCTTTTGGGGACTAAATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATTGGGCCAACCGTCACTATTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA
Homology
[Close]
BLAST of CSPI01G10080.1 vs. TrEMBL
Match: A0A0A0LRS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056990 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.6e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 44  YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 103
           YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL
Sbjct: 3   YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 62

Query: 104 VSQREFLCSLALCESVIRCIDL 126
           VSQREFLCSLALCESVIRCIDL
Sbjct: 63  VSQREFLCSLALCESVIRCIDL 84

[Close]
BLAST of CSPI01G10080.1 vs. NCBI nr
Match: gi|700209367|gb|KGN64463.1| (hypothetical protein Csa_1G056990 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 9.4e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 44  YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 103
           YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL
Sbjct: 3   YCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLIL 62

Query: 104 VSQREFLCSLALCESVIRCIDL 126
           VSQREFLCSLALCESVIRCIDL
Sbjct: 63  VSQREFLCSLALCESVIRCIDL 84

The following BLAST results are available for this feature:
BLAST of CSPI01G10080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRS3_CUCSA6.6e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056990 PE=4 SV=1[more]
BLAST of CSPI01G10080.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209367|gb|KGN64463.1|9.4e-38100.00hypothetical protein Csa_1G056990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G10080CSPI01G10080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G10080.1CSPI01G10080.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10080.1.cds1CSPI01G10080.1.cds1CDS
CSPI01G10080.1.cds2CSPI01G10080.1.cds2CDS