Csa1G056990 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G056990
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6277337 .. 6277749 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTAGTTCGTGAGGAGATTGCCAAAACCTGGGCCGGGTTTGGGCCCCAGCCACGACTTGATGGGCCAACCGTCACTATGTAAGCCTAGCCCATTTCTTATCTTTAGCCCAGCTCTTTAGCTTTGGGAGCCCTAATTTCACACTGCCTTTGATCGGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

mRNA sequence

ATGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

Coding sequence (CDS)

ATGCAGTACTGTCTCTCCGGAACTCACTCATCTCCCTTTCTCGACGACGTTGAAGCTTCTTCAGCTATTGTCGCTGGCAATCCACTAATCCTCAGGGCTTACTGTAAACTACCACGCTCCCTGCTTCAGCGTTTCGCTCTCGTTTCTGGGTCGCATTCATTCTTCCTCCCTCAGCGCTTAATTCTCGTCTCTCAGCGTGAGTTTTTATGTTCTCTTGCTTTATGCGAGTCTGTTATTCGATGTATTGATCTTTGA

Protein sequence

MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRLILVSQREFLCSLALCESVIRCIDL*
Homology
[Close]
BLAST of Csa1G056990 vs. TrEMBL
Match: A0A0A0LRS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056990 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60
          MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL
Sbjct: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60

Query: 61 ILVSQREFLCSLALCESVIRCIDL 85
          ILVSQREFLCSLALCESVIRCIDL
Sbjct: 61 ILVSQREFLCSLALCESVIRCIDL 84

[Close]
BLAST of Csa1G056990 vs. NCBI nr
Match: gi|700209367|gb|KGN64463.1| (hypothetical protein Csa_1G056990 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.4e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60
          MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL
Sbjct: 1  MQYCLSGTHSSPFLDDVEASSAIVAGNPLILRAYCKLPRSLLQRFALVSGSHSFFLPQRL 60

Query: 61 ILVSQREFLCSLALCESVIRCIDL 85
          ILVSQREFLCSLALCESVIRCIDL
Sbjct: 61 ILVSQREFLCSLALCESVIRCIDL 84

The following BLAST results are available for this feature:
BLAST of Csa1G056990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRS3_CUCSA2.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056990 PE=4 SV=1[more]
BLAST of Csa1G056990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209367|gb|KGN64463.1|3.4e-39100.00hypothetical protein Csa_1G056990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU128866cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G056990.1Csa1G056990.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU128866CU128866transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G056990CSPI01G10080Wild cucumber (PI 183967)cpicuB000
Csa1G056990CsGy1G010110Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G056990Watermelon (97103) v2cuwmbB032
Csa1G056990Wax gourdcuwgoB026
Csa1G056990Cucumber (Gy14) v1cgycuB188
Csa1G056990Cucurbita maxima (Rimu)cmacuB204
Csa1G056990Cucurbita maxima (Rimu)cmacuB397
Csa1G056990Cucurbita moschata (Rifu)cmocuB189
Csa1G056990Cucurbita moschata (Rifu)cmocuB380
Csa1G056990Melon (DHL92) v3.5.1cumeB027
Csa1G056990Watermelon (Charleston Gray)cuwcgB035
Csa1G056990Watermelon (97103) v1cuwmB008
Csa1G056990Cucurbita pepo (Zucchini)cpecuB029
Csa1G056990Cucurbita pepo (Zucchini)cpecuB515
Csa1G056990Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G056990Melon (DHL92) v3.6.1cumedB022
Csa1G056990Silver-seed gourdcarcuB0523
Csa1G056990Silver-seed gourdcarcuB1017